View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2858_high_18 (Length: 251)
Name: NF2858_high_18
Description: NF2858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2858_high_18 |
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Alignment Details
Target: chr5 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 54 - 239
Target Start/End: Complemental strand, 10267453 - 10267268
Alignment:
| Q |
54 |
taagactctgataatctgactgaataagtatagaagaaaacacaatttatgagtaagtatccttctgcaataatagaataacaatatggaaagagcaaat |
153 |
Q |
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| T |
10267453 |
taagactctgataatctgactgaataagtatagaagaaaacataatttatgagtaagtatccttctgcaataatagaataacaatatggaaagaacaaat |
10267354 |
T |
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| Q |
154 |
agacaaaagtcaaaagtaagtattgatcttaggtgatcaagatgattggccgagcttggacagtgtttcgtcaagatggatgtctg |
239 |
Q |
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| T |
10267353 |
agacaaaagtcaaaagtaagtattgatcttaggtgatcaagatgattggccgagcttggacagtgtttcgtcaagatggatgtctg |
10267268 |
T |
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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 82 - 127
Target Start/End: Original strand, 25461257 - 25461302
Alignment:
| Q |
82 |
tatagaagaaaacacaatttatgagtaagtatccttctgcaataat |
127 |
Q |
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| T |
25461257 |
tatagaagaaaacagaatttatgagtaagtatccttctgtaataat |
25461302 |
T |
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