View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2858_high_25 (Length: 238)
Name: NF2858_high_25
Description: NF2858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2858_high_25 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 18 - 237
Target Start/End: Complemental strand, 11330861 - 11330642
Alignment:
| Q |
18 |
aaaacaagtagaagagctagcaatatttacttactatcaattgtctccatcacagtcggctgtttccaattaaccctacgagatacaattcccaaagcaa |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |
|
|
| T |
11330861 |
aaaacaagtagaagagctagcaatatttacttactatcaattgtctccatcacagtcggctgtttccaattaaacctgcgagatacaattcccaaagcaa |
11330762 |
T |
|
| Q |
118 |
tgtttcggacctgcaacaaaagaattcggatattaaatgagtacagtagaggaaaatnnnnnnnctttaggctaatagcttcagttaaattgggttatag |
217 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
11330761 |
tgttccggacctgcaacaaaagaattcggatattaaatgagtacagtagaggaaaataaaaaaactttaggctaatagcttcagttaaattgggttatag |
11330662 |
T |
|
| Q |
218 |
tcccacataggtagctcggt |
237 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
11330661 |
tcccacataggtagctcggt |
11330642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 21 - 153
Target Start/End: Original strand, 7178043 - 7178175
Alignment:
| Q |
21 |
acaagtagaagagctagcaatatttacttactatcaattgtctccatcacagtcggctgtttccaattaaccctacgagatacaattcccaaagcaatgt |
120 |
Q |
| |
|
|||||| ||| ||||| |||||||||||||||||||||||||||||| |||||| | ||||||||||| || ||||| |||||||||||||| ||||||| |
|
|
| T |
7178043 |
acaagtggaaaagctaacaatatttacttactatcaattgtctccataacagtcagttgtttccaatttactctacgggatacaattcccaatgcaatgt |
7178142 |
T |
|
| Q |
121 |
ttcggacctgcaacaaaagaattcggatattaa |
153 |
Q |
| |
|
| |||||||||||||||| ||| ||||||||| |
|
|
| T |
7178143 |
tccggacctgcaacaaaataatcaggatattaa |
7178175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University