View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2858_high_26 (Length: 238)
Name: NF2858_high_26
Description: NF2858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2858_high_26 |
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Alignment Details
Target: chr6 (Bit Score: 164; Significance: 9e-88; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 5 - 223
Target Start/End: Original strand, 11224978 - 11225195
Alignment:
| Q |
5 |
gaactgattacaaaatcaaaattctgcaaattgattgtttaatgtttatctgattgtaagttgattgtttaattgaaaaagattcttcaaattgattgaa |
104 |
Q |
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| T |
11224978 |
gaactgattacaaaatcaaaattctg-aaattgattgtttaatgtttacctgattgtaagctgattgtttaattgaaaaagattctgcaaattaattgaa |
11225076 |
T |
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| Q |
105 |
aaagatggatgtaagtatactttaaggcgtg-tgggtgattatatggtgttcatgtagtataagagttacacattgttgataaaattctgcgaactgatg |
203 |
Q |
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| T |
11225077 |
aaagatggatgtaagtatactttaaggcgtgttggttgattatatgttgttcatgtagtataagagttacacattgttgat-aaattctgcgaactaatg |
11225175 |
T |
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| Q |
204 |
tttgatgtgcacctgaatgt |
223 |
Q |
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| T |
11225176 |
tttgatgtgtacctgaatgt |
11225195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 6 - 202
Target Start/End: Original strand, 11225331 - 11225528
Alignment:
| Q |
6 |
aactgattacaaaatcaaaattctgcaaattgattgtttaatgtttatctgattgtaagttgattgtttaattgaaaaagattcttcaaattgattgaaa |
105 |
Q |
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| T |
11225331 |
aactgattgtaaaatcaaaattttgtgaactgattgtttaatgtgtacctgaatgtaagctgattatttaattcaaaaggattctgcaagttgattgaaa |
11225430 |
T |
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| Q |
106 |
aagatggatgtaagtatactttaaggcgtg-tgggtgattatatggtgttcatgtagtataagagttacacattgttgataaaattctgcgaactgat |
202 |
Q |
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| T |
11225431 |
aatatagctgtaagtatacttttgggtgtgttggttgattaaatgttgtgcatgtagtacaagtgttacgcattcttgacaaaattctgagaactgat |
11225528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 40 - 202
Target Start/End: Original strand, 11225174 - 11225337
Alignment:
| Q |
40 |
tgtttaatgtttatctgattgtaagttgattgtttaattgaaaaagattcttcaaattgattgaaaaagatggatgtaagtatactttaaggcgtg-tgg |
138 |
Q |
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| T |
11225174 |
tgtttgatgtgtacctgaatgtaagttggttgtttaattgaaaaggattctgcaaactgatggaaaaagatagctgtaaatatacttttgggtgtgttga |
11225273 |
T |
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| Q |
139 |
gtgattatatggtgttcatgtagtataagagttacacattgttgataaaattctgcgaactgat |
202 |
Q |
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| T |
11225274 |
ttgattaaatgttatgcatgtactataagtgttgcacattgttgataaaattctggaaactgat |
11225337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 5 - 76
Target Start/End: Original strand, 11225521 - 11225592
Alignment:
| Q |
5 |
gaactgattacaaaatcaaaattctgcaaattgattgtttaatgtttatctgattgtaagttgattgtttaa |
76 |
Q |
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| T |
11225521 |
gaactgattgtaaaatcaaaattatgcgaactgattgtttgatgtatttctgattgtaagttgattgtttaa |
11225592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 140 - 202
Target Start/End: Original strand, 11224924 - 11224985
Alignment:
| Q |
140 |
tgattatatggtgttcatgtagtataagagttacacattgttgataaaattctgcgaactgat |
202 |
Q |
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| T |
11224924 |
tgattaaatgttgtgcatgtagtataagagttacacattgttga-aatattctgcgaactgat |
11224985 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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