View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2858_high_4 (Length: 449)
Name: NF2858_high_4
Description: NF2858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2858_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 14 - 436
Target Start/End: Original strand, 23034030 - 23034452
Alignment:
| Q |
14 |
atatcaacataaccatactcagcagcaacataaagtgctgtttctccaccttgattctgctttgcaaatatttcgcgcagtttaccctcttcagcaccat |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23034030 |
atatcaacataaccatactcagcagcaacataaagtgctgtttctccaccttgattctgctttgcaaatatttcgcgcagtttaccctcttcagcaccat |
23034129 |
T |
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| Q |
114 |
caactgtatccttcaaagaagccatgttccctgctcttgctgccgaatgtaacggcgtatcgtcgcgcttccccgtcaattgttttgtcattttcttcct |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
23034130 |
caactgtatccttcaaagaagccatgttccctgctcttgctgctgaatgtaacggcgtatcgtcgcgcttccccgtcaattgtttcgtcattttcttcct |
23034229 |
T |
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| Q |
214 |
ttgagcccttactggtgcagcctgaggctgcacagtttcagcttctgtgtccattgaatacaattctccaaactaatgaactctttttgttcttgtgact |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
23034230 |
ttgagcccttactggtgcagcctgaggctgcacagtttcagcttctgtgtccattgaatacaattctccaaactaatgaactccttttgttcttgtgact |
23034329 |
T |
|
| Q |
314 |
tcaattatcagaatcagaatcttctgttttttcattcnnnnnnnnnnnnnnnnnnnnnntcaacatcaacatctttcattacaaataattgtcatctcct |
413 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
23034330 |
tcaattatcagaatcagaatcttctgttttttcattccaacaaaaacaaaaacacaaaatcaacatcaacatctttcattacaaataattgtcatctcct |
23034429 |
T |
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| Q |
414 |
tgaaacaaatcaaacaagataat |
436 |
Q |
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||||||||||||||||||||||| |
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| T |
23034430 |
tgaaacaaatcaaacaagataat |
23034452 |
T |
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Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 16 - 73
Target Start/End: Original strand, 41067092 - 41067149
Alignment:
| Q |
16 |
atcaacataaccatactcagcagcaacataaagtgctgtttctccaccttgattctgc |
73 |
Q |
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||||| ||||||||||||||||||||||||||| |||||||||||| |||| |||||| |
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| T |
41067092 |
atcaatataaccatactcagcagcaacataaagagctgtttctccatcttggttctgc |
41067149 |
T |
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