View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2858_high_5 (Length: 435)
Name: NF2858_high_5
Description: NF2858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2858_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 14 - 420
Target Start/End: Original strand, 42075073 - 42075482
Alignment:
| Q |
14 |
agaggaccagagggacaaaatattcttaatataagtaattggttagtcaacaattagctttcaagcaaaaagaaattccactaattaaatgctccaatgc |
113 |
Q |
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| T |
42075073 |
agaggaccagagggacaaaatattcttaacataagtaattggttagtcaacaattagctttcaagcaaaaagaaattccactaattaaatgctccaatgc |
42075172 |
T |
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| Q |
114 |
actagccaacaaagacttaggtggagaatatcccattcaagtgcgtttctttttgcaaatttaatatgtgattgttaacttattagttgtcgtcgtaccn |
213 |
Q |
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| T |
42075173 |
actagccaacaaagacttaagtagagaatatcc-attcaagtgcgtttctttttgcaaatttaatatgtggttgttaacttattagttgtcgtcgtacct |
42075271 |
T |
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| Q |
214 |
nnnnnnaagtac---accagtagttgtattaattgatctaaaccattttttatgttgcaaaaaattcaagccatttttgttcaacatagatatggccaaa |
310 |
Q |
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| T |
42075272 |
ttttttaagtaccacactagtagttgtattaattgatcgaaaccattttttatgttgcaaaaaattcaagccatttttgttcaacatagatatggccaaa |
42075371 |
T |
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| Q |
311 |
caaatctcacataatcctctaagccacggtgccaccttcttctttttctcaaaagtttcccttccgaatctaaataataccgggtattaat-tatatatt |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
42075372 |
caaatctcacataatcctctaagccacggtgccacctttttctttttctcaaaagtttcccttccgaatctaaataataccgggtattaatatatatatt |
42075471 |
T |
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| Q |
410 |
tttgtcataca |
420 |
Q |
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| T |
42075472 |
tttgtcataca |
42075482 |
T |
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