View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2858_high_7 (Length: 398)
Name: NF2858_high_7
Description: NF2858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2858_high_7 |
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| [»] chr2 (1 HSPs) |
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| [»] scaffold0288 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 398
Target Start/End: Original strand, 11330230 - 11330615
Alignment:
| Q |
1 |
tatcctggttttaataattctgaggtacatactacattggaacaagaataagataatagtttgattaaattttcagttgctactgatcatcttattagat |
100 |
Q |
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| T |
11330230 |
tatcctggttttaataattctgaggtacatactacattggaacaagaataagataatagtttgattaaattttcagttgctactgatcatcttattagat |
11330329 |
T |
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| Q |
101 |
atagcgaatggaataagtaacataacctttcagaaaagactaatattaacaatgtccaatactatgttgagcaggttagcctagatattaccctaagtag |
200 |
Q |
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| T |
11330330 |
atagcaaatggaataagtaacataacctttcagaaaagactaatattaacaatgtccaatactatgttgagcaggttagcctagatattaccctaagtag |
11330429 |
T |
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| Q |
201 |
agtgcctacttagattatagcagtaaaattcatcaaactctaaagggaagtgaaattggacattcatgcagcaacttcaatcaataagtataactttttt |
300 |
Q |
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| T |
11330430 |
agtgcctacttagattatagcagtaaaattcatcaaactctaaagggaagtgaaattggacattcatgcagcaacttcaatcaataagtataactttttt |
11330529 |
T |
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| Q |
301 |
ctataggcaaatgttagttgttacttgttagtaaattgttagagggaagggggaaatgttagtttccggggatcgaactcggaacctccttcttaaat |
398 |
Q |
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| T |
11330530 |
ctataggcaaatgttagttgttacttgttagtaaatttttagagggaaggggg------------ccggggatcgaactcggaacctccttcttaaat |
11330615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0288 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0288
Description:
Target: scaffold0288; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 319 - 398
Target Start/End: Complemental strand, 9979 - 9899
Alignment:
| Q |
319 |
tgttacttgttagtaaattgtta-gagggaagggggaaatgttagtttccggggatcgaactcggaacctccttcttaaat |
398 |
Q |
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| T |
9979 |
tgttagttgttagtaaattgttaagagaggagggggaaatgttagtttctgggagtcaaacccgggacctccttcttaaat |
9899 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 327 - 379
Target Start/End: Complemental strand, 35908657 - 35908605
Alignment:
| Q |
327 |
gttagtaaattgttagagggaagggggaaatgttagtttccggggatcgaact |
379 |
Q |
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| T |
35908657 |
gttagtacattgttagaggggagggggaaatgttagtttctgggaatccaact |
35908605 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 327 - 379
Target Start/End: Complemental strand, 33912022 - 33911970
Alignment:
| Q |
327 |
gttagtaaattgttagagggaagggggaaatgttagtttccggggatcgaact |
379 |
Q |
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| T |
33912022 |
gttagtacattgttagaggggagggggaaatgttagtttctgggaatccaact |
33911970 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 319 - 398
Target Start/End: Complemental strand, 5362908 - 5362833
Alignment:
| Q |
319 |
tgttacttgttagtaaattgttagagggaagggggaaatgttagtttccggggatcgaactcggaacctccttcttaaat |
398 |
Q |
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| T |
5362908 |
tgttagttgttagta--ttgttggagggaagggg-aaatgttagtttcc-aggattgaacacgggacctccttcttaaat |
5362833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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