View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2858_high_9 (Length: 341)

Name: NF2858_high_9
Description: NF2858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2858_high_9
NF2858_high_9
[»] chr3 (9 HSPs)
chr3 (18-329)||(54563159-54563470)
chr3 (114-321)||(44493363-44493570)
chr3 (43-271)||(19822578-19822806)
chr3 (166-233)||(4485684-4485751)
chr3 (154-242)||(36788817-36788905)
chr3 (154-233)||(49640937-49641016)
chr3 (32-206)||(49497740-49497914)
chr3 (41-305)||(12528243-12528507)
chr3 (184-305)||(14483726-14483847)
[»] chr5 (2 HSPs)
chr5 (25-330)||(22787701-22788006)
chr5 (115-244)||(13573038-13573167)
[»] chr8 (4 HSPs)
chr8 (38-287)||(36307666-36307915)
chr8 (40-321)||(9529612-9529893)
chr8 (193-290)||(13813392-13813489)
chr8 (154-206)||(29337620-29337672)
[»] chr1 (3 HSPs)
chr1 (38-295)||(38490531-38490788)
chr1 (46-92)||(2004190-2004236)
chr1 (154-203)||(41339249-41339298)
[»] chr7 (6 HSPs)
chr7 (39-233)||(8863847-8864041)
chr7 (39-203)||(29960838-29961004)
chr7 (114-321)||(26401767-26401974)
chr7 (154-233)||(17244211-17244290)
chr7 (124-203)||(44674044-44674123)
chr7 (142-203)||(48768385-48768446)
[»] chr6 (3 HSPs)
chr6 (38-203)||(11605788-11605953)
chr6 (43-205)||(26905877-26906039)
chr6 (154-203)||(20928462-20928511)
[»] chr4 (4 HSPs)
chr4 (38-305)||(27011343-27011607)
chr4 (154-242)||(14262347-14262435)
chr4 (173-206)||(17779530-17779563)
chr4 (190-290)||(28859014-28859114)
[»] scaffold0381 (1 HSPs)
scaffold0381 (38-305)||(8178-8443)
[»] chr2 (1 HSPs)
chr2 (151-242)||(11551664-11551755)
[»] scaffold0011 (1 HSPs)
scaffold0011 (154-206)||(188208-188260)


Alignment Details
Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 18 - 329
Target Start/End: Original strand, 54563159 - 54563470
Alignment:
Q  18 attaatgcctctacgagtatttctgccatgaccccaccaaaacgaattaatcattctctcgatagaagtaatcaacgtggaaggtaactgaaaatgactc 117  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |||||    
T  54563159 attaatgcctctacgagtatttctgccatgaccccaccaaaatgaattaatcattctctcgatagaagtaatcaatgtggaaggtaactgaaaaagactc 54563258  T
Q  118 ataacataggaaggaatgacttggagaaccgacttgatcataacttcacgccctgccttagagaggcacttactactccaagaattaatgtgttgccaca 217  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  54563259 ataacataggaaggaatggcttggagaaccgacttgatcataacttcacgccctgccttagagaggcacttactactccaagaattaatgcgttgccaca 54563358  T
Q  218 cacggtccttaatataggcgaaagtggctgtcctatctcttccaatcatagacgtcattcctaagtacttaccggtacccaagacagctctgaccgctaa 317  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| ||||||||||    
T  54563359 cacggtccttaatataggcgaaagtggttgtcctatctcttccaatcatagacgacattcctaaatacttaccggtacccaagacagctttgaccgctaa 54563458  T
Q  318 aatggtggtgat 329  Q
    ||||||||||||    
T  54563459 aatggtggtgat 54563470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 114 - 321
Target Start/End: Complemental strand, 44493570 - 44493363
Alignment:
Q  114 actcataacataggaaggaatgacttggagaaccgacttgatcataacttcacgccctgccttagagaggcacttactactccaagaattaatgtgttgc 213  Q
    |||||||||||| || |||||  ||||||| || |||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||| ||||||    
T  44493570 actcataacataagacggaatagcttggagcacagacttgatcataacttcacgccctgccttagaaaggcacttgctactccacgaattaatatgttgc 44493471  T
Q  214 cacacacggtccttaatataggcgaaagtggctgtcctatctcttccaatcatagacgtcattcctaagtacttaccggtacccaagacagctctgaccg 313  Q
    ||||| |||||  ||||||| || || |||| ||| |||||||| ||||||||||||| ||| ||||| ||||| || |||||||| ||||||| |||||    
T  44493470 cacacccggtctataatataagcaaatgtggttgttctatctctgccaatcatagacggcatgcctaaatacttgccagtacccaaaacagctcggaccg 44493371  T
Q  314 ctaaaatg 321  Q
    ||||||||    
T  44493370 ctaaaatg 44493363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 43 - 271
Target Start/End: Original strand, 19822578 - 19822806
Alignment:
Q  43 ccatgaccccaccaaaacgaattaatcattctctcgatagaagtaatcaacgtggaaggtaactg-aaaatgactcataacataggaaggaatgacttgg 141  Q
    ||||||||||||| |||||| ||||||||||  || ||||  ||||| || |||  |||||  || |||||| ||||| ||||||||| ||||  ||||     
T  19822578 ccatgaccccaccgaaacgagttaatcattcgttcaatagtcgtaattaaagtgctaggtagttggaaaatg-ctcatgacataggaaagaatagcttga 19822676  T
Q  142 agaaccgacttgatcataacttcacgccctgccttagagaggcacttactactccaagaattaatgtgttgccacacacggtccttaatataggcgaaag 241  Q
    ||||||||||||||||| || ||| |||| |||||||| || ||||| || |||||||||||||| | |||||||||||| || || || ||||| ||||    
T  19822677 agaaccgacttgatcatgacctcatgccccgccttagatagacacttgctgctccaagaattaattttttgccacacacgatctttgatgtaggcaaaag 19822776  T
Q  242 tggctgtcctatctcttccaatcatagacg 271  Q
    |||  |||||||||||||| ||||||||||    
T  19822777 tggaggtcctatctcttcctatcatagacg 19822806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 166 - 233
Target Start/End: Original strand, 4485684 - 4485751
Alignment:
Q  166 cgccctgccttagagaggcacttactactccaagaattaatgtgttgccacacacggtccttaatata 233  Q
    ||||||||||| ||||||||||| |||||||||||||| ||   ||||||||||||||||||||||||    
T  4485684 cgccctgcctttgagaggcacttgctactccaagaatttatcctttgccacacacggtccttaatata 4485751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 154 - 242
Target Start/End: Complemental strand, 36788905 - 36788817
Alignment:
Q  154 atcataacttcacgccctgccttagagaggcacttactactccaagaattaatgtgttgccacacacggtccttaatataggcgaaagt 242  Q
    ||||| ||||||| |||||| ||||| || ||||||| |||||| |||||||| |  | |||||||||||| |||||||| ||||||||    
T  36788905 atcattacttcacaccctgctttagaaagacacttaccactccatgaattaattttattccacacacggtctttaatataagcgaaagt 36788817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 154 - 233
Target Start/End: Complemental strand, 49641016 - 49640937
Alignment:
Q  154 atcataacttcacgccctgccttagagaggcacttactactccaagaattaatgtgttgccacacacggtccttaatata 233  Q
    |||||||| ||||| ||||| |||||||| ||||||| ||||||||||||||| |  |||||||| || ||||| |||||    
T  49641016 atcataacctcacgacctgctttagagagacacttaccactccaagaattaattttctgccacacgcgatcctttatata 49640937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 206
Target Start/End: Complemental strand, 49497914 - 49497740
Alignment:
Q  32 gagtatttctgccatgaccccaccaaaacgaattaatcattctctcgatagaagtaatcaacgtggaaggtaactgaaaatgactcataacataggaagg 131  Q
    ||||| |||| |||||||||||||| || ||||| |||||  | ||||||  | |||| || || |  ||||||||||||   ||||||||||| ||||     
T  49497914 gagtagttctaccatgaccccaccagaaggaattcatcatcttttcgataatattaattaaagtagttggtaactgaaaaatgctcataacatacgaagt 49497815  T
Q  132 aatgacttggagaaccgacttgatcataacttcacgccctgccttagagaggcacttactactccaagaattaat 206  Q
    |||| | || |  ||  | || |||||||| ||||||||||||||||| |  || ||||||||||||||||||||    
T  49497814 aatggcctgcaagacatatttaatcataacctcacgccctgccttagataaacatttactactccaagaattaat 49497740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 305
Target Start/End: Original strand, 12528243 - 12528507
Alignment:
Q  41 tgccatgaccccaccaaaacgaattaatcattctctcgatagaagtaatcaacgtggaaggtaactgaaaatgactcataacataggaaggaatgacttg 140  Q
    ||||||| ||||||||||||||||| ||||| |||||||| || ||||| | | |    ||||  || ||   |||||||||||| || || ||  ||||    
T  12528243 tgccatgcccccaccaaaacgaatttatcatcctctcgatggatgtaataagcatatctggtatttggaacaaactcataacataagatggtatagcttg 12528342  T
Q  141 gagaaccgacttgatcataacttcacgccctgccttagagaggcacttactactccaagaattaatgtgttgccacacacggtccttaatataggcgaaa 240  Q
     || || ||||| |||||||| || || || ||||| || |||||||| ||||||||||| |||||   ||||||||||| ||| |||||  | |  |||    
T  12528343 aagtacggacttaatcataacctcccgtcccgcctttgaaaggcacttgctactccaagagttaatcctttgccacacacagtctttaatgaaagaaaaa 12528442  T
Q  241 gtggctgtcctatctcttccaatcatagacgtcattcctaagtacttaccggtacccaagacagc 305  Q
    || | ||| ||||||||||| || || || | ||| ||||| |||||||  |||||||| |||||    
T  12528443 gtagttgttctatctcttcctattatggatggcatccctaaatacttacttgtacccaaaacagc 12528507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 305
Target Start/End: Complemental strand, 14483847 - 14483726
Alignment:
Q  184 cacttactactccaagaattaatgtgttgccacacacggtccttaatataggcgaaagtggctgtcctatctcttccaatcatagacgtcattcctaagt 283  Q
    ||||||||||||||||| |||||   |||||||||| |||| || ||| | |  ||||| ||  |||||||||| || ||||| || | ||| |||||||    
T  14483847 cacttactactccaagagttaatcctttgccacacatggtctttgataaaagaaaaagtagccttcctatctctccctatcatggatggcatacctaagt 14483748  T
Q  284 acttaccggtacccaagacagc 305  Q
    ||||||  |||||||| |||||    
T  14483747 acttacttgtacccaaaacagc 14483726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 25 - 330
Target Start/End: Original strand, 22787701 - 22788006
Alignment:
Q  25 cctctacgagtatttctgccatgaccccaccaaaacgaattaatcattctctcgatagaagtaatcaacgtggaaggtaactgaaaatgactcataacat 124  Q
    |||||| ||||  |||||||||||||||||||||| |||||||||||||| |||||||| ||||| |||||||| | ||  |||||| ||||||||||||    
T  22787701 cctctatgagtggttctgccatgaccccaccaaaatgaattaatcattctgtcgatagaggtaataaacgtggacgatagttgaaaaagactcataacat 22787800  T
Q  125 aggaaggaatgacttggagaaccgacttgatcataacttcacgccctgccttagagaggcacttactactccaagaattaatgtgttgccacacacggtc 224  Q
    ||||||||||| |||||||||||||||||||| |||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  22787801 aggaaggaatggcttggagaaccgacttgatcgtaacttcacgtcctgccttagataggcacttactactccaagaattaatgtgatgccacacacggtc 22787900  T
Q  225 cttaatataggcgaaagtggctgtcctatctcttccaatcatagacgtcattcctaagtacttaccggtacccaagacagctctgaccgctaaaatggtg 324  Q
    ||||||||| || || |||| |||||||||||||||||||||||||| ||||||||| |||||||| || ||||||||| ||||||| ||||||||||||    
T  22787901 cttaatataagcaaatgtggatgtcctatctcttccaatcatagacggcattcctaaatacttaccagtgcccaagacaactctgactgctaaaatggtg 22788000  T
Q  325 gtgatg 330  Q
    ||||||    
T  22788001 gtgatg 22788006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 115 - 244
Target Start/End: Complemental strand, 13573167 - 13573038
Alignment:
Q  115 ctcataacataggaaggaatgacttggagaaccgacttgatcataacttcacgccctgccttagagaggcacttactactccaagaattaatgtgttgcc 214  Q
    ||||||||||| || || ||| | || | |||||| || |||||||||||||||||||| || || | ||||||||||| | |||||||||| |  ||||    
T  13573167 ctcataacatatgaggggatggcctgcaaaaccgatttaatcataacttcacgccctgctttggataagcacttactaccctaagaattaatcttctgcc 13573068  T
Q  215 acacacggtccttaatataggcgaaagtgg 244  Q
    | || |  ||||||||||| || |||||||    
T  13573067 aaactctttccttaatataagcaaaagtgg 13573038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 94; Significance: 8e-46; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 38 - 287
Target Start/End: Original strand, 36307666 - 36307915
Alignment:
Q  38 ttctgccatgaccccaccaaaacgaattaatcattctctcgatagaagtaatcaacgtggaaggtaactgaaaatgactcataacataggaaggaatgac 137  Q
    |||| |||||||||||||||||||| || |||||||| ||||| | ||||| |||||| |  ||||| || ||  ||||||| || |||||||||||| |    
T  36307666 ttctaccatgaccccaccaaaacgagttcatcattctttcgatggtagtaaacaacgtagttggtaagtggaagagactcatgacgtaggaaggaatggc 36307765  T
Q  138 ttggagaaccgacttgatcataacttcacgccctgccttagagaggcacttactactccaagaattaatgtgttgccacacacggtccttaatataggcg 237  Q
    ||||||||| ||||| ||||||||||| || ||||| |||||||| |||||||||||||||||||||||   |||||||||||| ||||||||||| ||     
T  36307766 ttggagaactgactttatcataacttcccgacctgctttagagagacacttactactccaagaattaatcctttgccacacacgatccttaatataagca 36307865  T
Q  238 aaagtggctgtcctatctcttccaatcatagacgtcattcctaagtactt 287  Q
    ||||||| ||| ||||  |  |||||||| |||| ||| ||||| |||||    
T  36307866 aaagtggatgttctattacgaccaatcatggacggcatacctaaatactt 36307915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 40 - 321
Target Start/End: Complemental strand, 9529893 - 9529612
Alignment:
Q  40 ctgccatgaccccaccaaaacgaattaatcattctctcgatagaagtaatcaacgtggaaggtaactgaaaatgactcataacataggaaggaatgactt 139  Q
    |||||||| |||| |||||| |  || |||||||  ||||||  ||| || |||||||| ||||||||| |  ||||||||||||| || |||||| |||    
T  9529893 ctgccatgccccctccaaaatgtgttcatcattcgttcgatattagtgattaacgtggagggtaactgatacagactcataacatatgagggaatggctt 9529794  T
Q  140 ggagaaccgacttgatcataacttcacgccctgccttagagaggcacttactactccaagaattaatgtgttgccacacacggtccttaatataggcgaa 239  Q
    | || || |||||||||||||| ||   || |||||| || |  ||||| |||||||| || |||||   |||||| || || |||||||| || || ||    
T  9529793 gaaggactgacttgatcataacctcgtaccttgccttggacaaacacttgctactccatgagttaattctttgccaaactcgatccttaatgtaagcaaa 9529694  T
Q  240 agtggctgtcctatctcttccaatcatagacgtcattcctaagtacttaccggtacccaagacagctctgaccgctaaaatg 321  Q
     |||| ||| ||||| || | ||||||||| | |||| |||| ||||| |||||||| || ||||| |  ||||||||||||    
T  9529693 tgtggttgttctatccctcctaatcatagatggcatttctaaatacttgccggtacctaaaacagcacgaaccgctaaaatg 9529612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 193 - 290
Target Start/End: Original strand, 13813392 - 13813489
Alignment:
Q  193 ctccaagaattaatgtgttgccacacacggtccttaatataggcgaaagtggctgtcctatctcttccaatcatagacgtcattcctaagtacttacc 290  Q
    ||||||||||| ||   |||||||||||||||||| ||||| || |||||||| |||||||| | ||||||||| || | ||| ||||| ||||||||    
T  13813392 ctccaagaatttattctttgccacacacggtccttgatataagcaaaagtggccgtcctatcccgtccaatcatggaaggcatacctaaatacttacc 13813489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 206
Target Start/End: Original strand, 29337620 - 29337672
Alignment:
Q  154 atcataacttcacgccctgccttagagaggcacttactactccaagaattaat 206  Q
    |||||||| ||||| ||| | |||||||| ||||||| |||||||||||||||    
T  29337620 atcataacctcacgacctactttagagagacacttaccactccaagaattaat 29337672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 90; Significance: 2e-43; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 38 - 295
Target Start/End: Original strand, 38490531 - 38490788
Alignment:
Q  38 ttctgccatgaccccaccaaaacgaattaatcattctctcgatagaagtaatcaacgtggaaggtaactgaaaatgactcataacataggaaggaatgac 137  Q
    |||| |||||||||||||||||||| || |||||||| ||||| | |||||||| ||| |  ||||| || ||  ||||||| || || ||||||||| |    
T  38490531 ttctaccatgaccccaccaaaacgagttcatcattctttcgatggtagtaatcagcgtagttggtaagtggaagagactcatgacgtaagaaggaatggc 38490630  T
Q  138 ttggagaaccgacttgatcataacttcacgccctgccttagagaggcacttactactccaagaattaatgtgttgccacacacggtccttaatataggcg 237  Q
    ||| ||||| ||||| ||||||||||| || ||||| |||||||| |||||||||||||||||||||||   |||||||||||| ||||||||||| ||     
T  38490631 ttgaagaactgactttatcataacttcccgacctgctttagagagacacttactactccaagaattaatcatttgccacacacgatccttaatataagca 38490730  T
Q  238 aaagtggctgtcctatctcttccaatcatagacgtcattcctaagtacttaccggtac 295  Q
    ||||||| ||| ||||| |  || ||||| |||| ||| ||||| ||||| |||||||    
T  38490731 aaagtggttgttctatcacgaccgatcatggacggcatacctaaatactttccggtac 38490788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 92
Target Start/End: Original strand, 2004190 - 2004236
Alignment:
Q  46 tgaccccaccaaaacgaattaatcattctctcgatagaagtaatcaa 92  Q
    |||||||||||||| ||||||||||||| |||||||| |||||||||    
T  2004190 tgaccccaccaaaatgaattaatcattcgctcgatagcagtaatcaa 2004236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 203
Target Start/End: Complemental strand, 41339298 - 41339249
Alignment:
Q  154 atcataacttcacgccctgccttagagaggcacttactactccaagaatt 203  Q
    |||||||| ||||||||| ||||||| || ||||||| ||||||||||||    
T  41339298 atcataacctcacgccctcccttagatagacacttaccactccaagaatt 41339249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 1e-29; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 39 - 233
Target Start/End: Original strand, 8863847 - 8864041
Alignment:
Q  39 tctgccatgaccccaccaaaacgaattaatcattctctcgatagaagtaatcaacgtggaaggtaactgaaaatgactcataacataggaaggaatgact 138  Q
    |||| |||| ||||||||||| ||||| ||||| || |||||||  || || | ||||| |||||| |||||| | ||||||||||| || |||||| ||    
T  8863847 tctgtcatgcccccaccaaaatgaattcatcatcctttcgatagtggtgataagcgtggtaggtaattgaaaaaggctcataacataagatggaatggct 8863946  T
Q  139 tggagaaccgacttgatcataacttcacgccctgccttagagaggcacttactactccaagaattaatgtgttgccacacacggtccttaatata 233  Q
    || ||||| ||||| |||||||  || || | |||||| ||||||||||| |||||||||||||| ||   ||||||||||||||||||||||||    
T  8863947 tgtagaacagacttaatcataaactcccgtcgtgcctttgagaggcacttgctactccaagaatttatcctttgccacacacggtccttaatata 8864041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 39 - 203
Target Start/End: Complemental strand, 29961004 - 29960838
Alignment:
Q  39 tctgccatgaccccaccaaaacgaattaatcattctctcgatagaagtaatcaacgtggaaggtaactgaaaatgactcataacataggaaggaatgact 138  Q
    ||||||||| ||||||||||| ||||| ||||| || |||||||  || || | ||| | |||||| |||||| | ||||||||||| || |||||| ||    
T  29961004 tctgccatgcccccaccaaaatgaattcatcatcctttcgatagtggtgataagcgtagtaggtaattgaaaaaggctcataacataagacggaatggct 29960905  T
Q  139 tggagaaccgacttgatcataacttcacgccctgccttagagaggcacttac--tactccaagaatt 203  Q
    || ||||| ||||| |||||||  || ||||||||||| ||||||||||| |  |||||||||||||    
T  29960904 tgtagaacagacttaatcataatctcccgccctgcctttgagaggcacttgctatactccaagaatt 29960838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 114 - 321
Target Start/End: Complemental strand, 26401974 - 26401767
Alignment:
Q  114 actcataacataggaaggaatgacttggagaaccgacttgatcataacttcacgccctgccttagagaggcacttactactccaagaattaatgtgttgc 213  Q
    ||||| |||||| || |||||| |||| ||  | |||||||||||||| || |||||||| || || |  ||||| |||||||| || |||||   ||||    
T  26401974 actcaaaacatatgagggaatggcttgaagggctgacttgatcataacctcgcgccctgctttggacaaacacttgctactccatgagttaattctttgc 26401875  T
Q  214 cacacacggtccttaatataggcgaaagtggctgtcctatctcttccaatcatagacgtcattcctaagtacttaccggtacccaagacagctctgaccg 313  Q
    || || ||||||||||| || |  || ||| || | |||||  | ||||||||||| | ||||||||| |||||||||||||| || ||||| | |||||    
T  26401874 caaacccggtccttaatgtaagaaaatgtgtctattctatccatcccaatcatagatggcattcctaaatacttaccggtacctaaaacagcacggaccg 26401775  T
Q  314 ctaaaatg 321  Q
    ||||||||    
T  26401774 ctaaaatg 26401767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 154 - 233
Target Start/End: Original strand, 17244211 - 17244290
Alignment:
Q  154 atcataacttcacgccctgccttagagaggcacttactactccaagaattaatgtgttgccacacacggtccttaatata 233  Q
    |||||||| ||||| ||||| |||||||| ||||||| ||||||||||||||| |  |||||||| || ||||| |||||    
T  17244211 atcataacctcacgacctgctttagagagacacttaccactccaagaattaattttctgccacacccgatcctttatata 17244290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 124 - 203
Target Start/End: Complemental strand, 44674123 - 44674044
Alignment:
Q  124 taggaaggaatgacttggagaaccgacttgatcataacttcacgccctgccttagagaggcacttactactccaagaatt 203  Q
    ||||| |||||| |||| ||||||||||||||||||||||  |||||| |||| || |  ||||| || |||||||||||    
T  44674123 taggagggaatggcttgaagaaccgacttgatcataactttgcgccctaccttggacaaacacttgctgctccaagaatt 44674044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 203
Target Start/End: Complemental strand, 48768446 - 48768385
Alignment:
Q  142 agaaccgacttgatcataacttcacgccctgccttagagaggcacttactactccaagaatt 203  Q
    ||||| || ||||||||||| || |||||||||||||| |  || |||||||||||||||||    
T  48768446 agaacggatttgatcataacctcgcgccctgccttagataaacaattactactccaagaatt 48768385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 38 - 203
Target Start/End: Original strand, 11605788 - 11605953
Alignment:
Q  38 ttctgccatgaccccaccaaaacgaattaatcattctctcgatagaagtaatcaacgtggaaggtaactgaaaatgactcataacataggaaggaatgac 137  Q
    |||||||||||||||||||||||||||| |||||| ||||||| | |  ||| |  || |  || || ||||||   ||||| ||||| ||||| ||  |    
T  11605788 ttctgccatgaccccaccaaaacgaattcatcattttctcgatggtatcaataagagttgctggcaattgaaaaatgctcatgacatacgaagggatagc 11605887  T
Q  138 ttggagaaccgacttgatcataacttcacgccctgccttagagaggcacttactactccaagaatt 203  Q
    ||| || ||||| || ||||| |||||||||||||| || || || ||||||||||||||||||||    
T  11605888 ttgaaggaccgatttaatcatgacttcacgccctgctttggaaagacacttactactccaagaatt 11605953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 43 - 205
Target Start/End: Complemental strand, 26906039 - 26905877
Alignment:
Q  43 ccatgaccccaccaaaacgaattaatcattctctcgatagaagtaatcaacgtggaaggtaactgaaaatgactcataacataggaaggaatgacttgga 142  Q
    ||||||||||||||||| ||||| |||||  |||| || ||| | ||||| || |  || ||||| |||  |||||||||||| ||||||||  | || |    
T  26906039 ccatgaccccaccaaaaggaattcatcatcttctcaattgaattgatcaaagtcgttggcaactggaaaatactcataacataagaaggaattgcctgca 26905940  T
Q  143 gaaccgacttgatcataacttcacgccctgccttagagaggcacttactactccaagaattaa 205  Q
    |||| || || |||||||| || |||||||| ||||| | |||||| | ||||||||||||||    
T  26905939 gaacagattttatcataacctcgcgccctgctttagacaagcactttccactccaagaattaa 26905877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 203
Target Start/End: Complemental strand, 20928511 - 20928462
Alignment:
Q  154 atcataacttcacgccctgccttagagaggcacttactactccaagaatt 203  Q
    |||||||| ||||||||| ||||||| || ||||||| ||||||||||||    
T  20928511 atcataacctcacgccctcccttagatagacacttaccactccaagaatt 20928462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 38 - 305
Target Start/End: Original strand, 27011343 - 27011607
Alignment:
Q  38 ttctgccatgaccccaccaaaacgaattaatcattctctcgatagaagtaatcaacgtggaaggtaactgaaaatgactcataacataggaaggaatgac 137  Q
    |||||||||| |||||||||||||| || ||||| ||||||||||| ||||| | |||    |||  ||  ||| ||||||||||||| || || ||  |    
T  27011343 ttctgccatgcccccaccaaaacgagtttatcatcctctcgatagatgtaatgagcgtatctggtgtctagaaaagactcataacataagatggtatagc 27011442  T
Q  138 ttggagaaccgacttgatcataacttcacgccctgccttagagaggcacttactactccaagaattaatgtgttgccacacacggtccttaatataggcg 237  Q
    ||| ||||| ||||   | ||||| |  || || ||||| || |||||||||||||||||||| |||||   ||||||||||||||| |||||  | |      
T  27011443 ttgaagaacagact---taataaccttccgtcccgccttcgaaaggcacttactactccaagagttaatcctttgccacacacggtctttaatgaaagaa 27011539  T
Q  238 aaagtggctgtcctatctcttccaatcatagacgtcattcctaagtacttaccggtacccaagacagc 305  Q
    || || | |||  |||||||||| ||||| |||| ||| |||| ||||||||| |||||||| |||||    
T  27011540 aatgtagatgttttatctcttcctatcatggacgacatccctaggtacttacctgtacccaaaacagc 27011607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 154 - 242
Target Start/End: Complemental strand, 14262435 - 14262347
Alignment:
Q  154 atcataacttcacgccctgccttagagaggcacttactactccaagaattaatgtgttgccacacacggtccttaatataggcgaaagt 242  Q
    ||||| ||||| ||||||||||| ||||||||||||  ||||||||| ||||| |  ||||| |||||||| ||||||||||| |||||    
T  14262435 atcatcacttctcgccctgcctttgagaggcacttatcactccaagagttaattttctgccagacacggtctttaatataggcaaaagt 14262347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 206
Target Start/End: Original strand, 17779530 - 17779563
Alignment:
Q  173 ccttagagaggcacttactactccaagaattaat 206  Q
    ||||||||||||||||||||||||| ||||||||    
T  17779530 ccttagagaggcacttactactccaggaattaat 17779563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 190 - 290
Target Start/End: Complemental strand, 28859114 - 28859014
Alignment:
Q  190 ctactccaagaattaatgtgttgccacacacggtccttaatataggcgaaagtggctgtcctatctcttccaatcatagacgtcattcctaagtacttac 289  Q
    |||||||||||||| || | |||||| ||| | || |||||||| || || |||| ||| ||||| ||||| |||||||| | ||  |||||||||||||    
T  28859114 ctactccaagaattgattttttgccaaacatgatctttaatatatgcaaacgtggttgttctatcccttccgatcatagatggcaaacctaagtacttac 28859015  T
Q  290 c 290  Q
    |    
T  28859014 c 28859014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0381 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0381
Description:

Target: scaffold0381; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 38 - 305
Target Start/End: Complemental strand, 8443 - 8178
Alignment:
Q  38 ttctgccatgaccccaccaaaacgaattaatcattctctcgatagaagtaatcaacgtggaaggtaactgaaaatgactcataacataggaaggaatgac 137  Q
    |||||||||| |||||||||||||| || ||||| ||||||||||| ||||| | |||    |||  ||  ||| ||||||||||||| || || ||  |    
T  8443 ttctgccatgcccccaccaaaacgagtttatcatcctctcgatagatgtaatgagcgtatctggtgtctagaaaagactcataacataagatggtatagc 8344  T
Q  138 ttggagaaccgacttgatcataacttcacgccctgccttagagaggcacttactactccaagaattaatgtgttgccacacacggtccttaat-ataggc 236  Q
    ||| ||||| ||||   | ||||| |  || || ||||| || |||||||||||||||||||| |||||   ||||||||||||||| ||||| | ||      
T  8343 ttgaagaacagact---taataaccttccgtcccgccttcgaaaggcacttactactccaagagttaatcctttgccacacacggtctttaatgaaagaa 8247  T
Q  237 gaaagtggctgtcctatctcttccaatcatagacgtcattcctaagtacttaccggtacccaagacagc 305  Q
     || || | |||  |||||||||| ||||| |||| ||| |||| ||||||||| |||||||| |||||    
T  8246 aaatgtagatgttttatctcttcctatcatggacgacatccctaggtacttacctgtacccaaaacagc 8178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 151 - 242
Target Start/End: Complemental strand, 11551755 - 11551664
Alignment:
Q  151 ttgatcataacttcacgccctgccttagagaggcacttactactccaagaattaatgtgttgccacacacggtccttaatataggcgaaagt 242  Q
    |||||||||||||| |||||||||||||| |  || ||||||||||||||||| || |  | ||| |||||||| || ||||||| ||||||    
T  11551755 ttgatcataacttcgcgccctgccttagataaacatttactactccaagaatttattttcttccagacacggtctttgatataggagaaagt 11551664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 206
Target Start/End: Original strand, 188208 - 188260
Alignment:
Q  154 atcataacttcacgccctgccttagagaggcacttactactccaagaattaat 206  Q
    |||||||| ||||| ||||| |||||||| ||||||| |||||||||||||||    
T  188208 atcataacctcacgacctgctttagagagacacttaccactccaagaattaat 188260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University