View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2858_low_1 (Length: 1769)
Name: NF2858_low_1
Description: NF2858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2858_low_1 |
 | |
|
| [»] scaffold0896 (2 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 745; Significance: 0; HSPs: 15)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 745; E-Value: 0
Query Start/End: Original strand, 498 - 1402
Target Start/End: Complemental strand, 7126202 - 7125297
Alignment:
| Q |
498 |
atcgctggacattatgtgaaaccgcataattaaaaatccttttgagtagataaggtgccatgatacccttacgctgaaaattgagtgcgtatagtgagtt |
597 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7126202 |
atcgctggacattatgtgaaaccgcataattaaaaatccttttgagtagataaggtgccatgatacccttacgctgaaaattgagtgcgtatagtgagtt |
7126103 |
T |
|
| Q |
598 |
tgagcgatcacgtagagacaaaacttgcgacacaaatttgtcaaaattcgttagagtcttaaattgtgaagaaattaatgtaagggttggaagacgtttc |
697 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7126102 |
tgagcgatcacgtagagacaaaacttgcgacacaaatttgtcaaaattcgttagagtcttaaattgtgaagaaattaatgtaagggttggaagacgtttc |
7126003 |
T |
|
| Q |
698 |
caaagattcttccatcttttggacaagatacaagtttgaatggctagtttagtatccaaagaggagagtatttgaagaagaacacaatcgggtaaatcac |
797 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
7126002 |
cagagattcttccatcttttggacaagatacaagtttgaatggctagtttagtatccaaagag-agagtatttgaagaagaacacaatcgggtaaatcac |
7125904 |
T |
|
| Q |
798 |
ttaacctatcttccttgccgnnnnnnnnnnnnnnnnnnatttcgcaaaattcatgaagagatttcttgaaatctttgagagtgttaacgagagaagaacg |
897 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7125903 |
ttaacctatcttccttgccgtcttcttcttcttcttctatttcgcaaaattcatgaagagatttcttgaaatctttgagagtgttaacgagagaagaacg |
7125804 |
T |
|
| Q |
898 |
aaatgaacgagcgagaggatgcttcaagagattcttccatcttgtggacaaaatattttgatatacctcaagagtttgaccgggacgtactttggatttt |
997 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7125803 |
aaatgaacgagcgaaaggatgcttcaagagattcttccatcttgtggacaaaatattttgatatacctcaagagtttgaccgggacgtactttggatttt |
7125704 |
T |
|
| Q |
998 |
cgttttggtctcctcattgtttcagaatttttgagtgagaagaagtaattgttttataagttctgagaagtagtaaannnnnnnaacaaattctggtatt |
1097 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
7125703 |
cgttttggtctcctcattgtttcagaatttttgagtgagaagaagtaattgttttataagttctgagaagtagtaaatttttttaacaaattctggtatt |
7125604 |
T |
|
| Q |
1098 |
tttgtgcgagcaagtgggaataaaacaaattctgaatcgaacttgattcaggctttgttatatgctcgtacga-nnnnnnnngttgacaaattacaagta |
1196 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
7125603 |
tttgtgcgagcaagtgggaataaaacaaattctgaatcgaacttgattcaggctttgttatatgctcgtacgatttttttttgttgacaaattacaagta |
7125504 |
T |
|
| Q |
1197 |
ttccgctttcnnnnnnnnntagttacaagtattccggttattgctcatttaggaattttaatat-aaaatattgatgtttatttattaggaaaatgaatt |
1295 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |
|
|
| T |
7125503 |
ttccgctttcaaaaaaaaatagttacaagtattccggttattgctcatttaggaattttaatataaaaatatcgatgtttatttattaggaaaatgaatt |
7125404 |
T |
|
| Q |
1296 |
caaaagtatataataaattaagtgaaaaatataacaatataaatttttgatttgatagtctttatttgtaccagcactagacggacgcatgtaaataatg |
1395 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7125403 |
caaaagtatataataaattaagtgaaaaatataacaatataaatttttgatttgatagtctttatttgtaccagcactagacggacgcatgtaaataatg |
7125304 |
T |
|
| Q |
1396 |
aacaata |
1402 |
Q |
| |
|
||||||| |
|
|
| T |
7125303 |
aacaata |
7125297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 12 - 504
Target Start/End: Complemental strand, 7126711 - 7126219
Alignment:
| Q |
12 |
atcatcaagctcttgcaaccagctaaggagaatcgaaggagccgttacataattccaccacatatttgcataaatcttgacgtgtttaacagaactagga |
111 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7126711 |
atcagcaagctcttgcaaccagctaaggagaatcgaaggagcagttacataattccaccacatatttgcataaatcttgacgtgtttaacagaactagga |
7126612 |
T |
|
| Q |
112 |
ttgtttcctgatagtatctcgaaaggtgtaccgacaaaagcaaaagtacaaagacctggcgtcaataactcaattttgcagtggtttttcttgggttcat |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
7126611 |
ttgtttcctgatagtatctcgaaaggtgtaccgacaaaagaaaaagtacaaagacctggcgttgataactcaattttgcagtagtttttcttgggttcat |
7126512 |
T |
|
| Q |
212 |
aatatacttgtatttttaatttgacaagcgtggtacttgatatgtatagattttgttcaccaataatttcaaaattagaaatcatcaaactattcaatct |
311 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7126511 |
aatatacttgaatttttaatttgacaagcgtggtacttgatatgtatagattttgttcaccaataatttcaaaattagaaatcatcaaactattcaatct |
7126412 |
T |
|
| Q |
312 |
tggatacgctgaaaaaggctcggctccaccacgaaaggcgacatcccctagatgcaagcgagttaatgctggcaaattcagataatcaggaaaaaatatt |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7126411 |
tggatacgctgaaaaaggctcggctccaccacgaaaggcgacatcccctagatgcaagcgagttaatgctggcaaattcagataatcaggaaaaaatatt |
7126312 |
T |
|
| Q |
412 |
ttcttagacgttctaggatgagcaacataaaggttaagagaggttaaagtgtgacatgagaaaaagcaagacgaaaaagatttaatatcgctg |
504 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7126311 |
ttcttagacgttctaggatgagcaacataaaggttaagagaggttaaagtgtgacatgagaaaaagcaagacgaaaaagatttaatatcgctg |
7126219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 282; E-Value: 1e-157
Query Start/End: Original strand, 1488 - 1769
Target Start/End: Complemental strand, 7125210 - 7124929
Alignment:
| Q |
1488 |
cgtatgaatgtctgtgatgtttaaagtcttatcattttcaatgaaatcactctttcaaaacataacctcccgaacctataatatttgaagaagaccactt |
1587 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7125210 |
cgtatgaatgtctgtgatgtttaaagtcttatcattttcaatgaaatcactctttcaaaacataacctcccgaacctataatatttgaagaagaccactt |
7125111 |
T |
|
| Q |
1588 |
aaccttaacaaccttcttgtaacctgacaaatcagcccaactttttaacattctaagcgggcgaggaccccagttttcattataaagaaacaaaacaacc |
1687 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7125110 |
aaccttaacaaccttcttgtaacctgacaaatcagcccaactttttaacattctaagcgggcgaggaccccagttttcattataaagaaacaaaacaacc |
7125011 |
T |
|
| Q |
1688 |
ggacaatgatcataaacacctttgtgatcataacaagaaacgatctaactatatacaccatcaccacagtatcaagtaaatc |
1769 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7125010 |
ggacaatgatcataaacacctttgtgatcataacaagaaacgatctaactatatacaccatcaccacagtatcaagtaaatc |
7124929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 55; E-Value: 8e-22
Query Start/End: Original strand, 222 - 416
Target Start/End: Complemental strand, 7119339 - 7119145
Alignment:
| Q |
222 |
tatttttaatttgacaagcgtggtacttgatatgtatagattttgttcaccaataatttcaaaattagaaatcatcaaactattcaatcttggatacgct |
321 |
Q |
| |
|
||||| ||||||| | |||||||||||||||||| ||||||||||||| |||| ||||| ||||| ||||| ||||||||||||||| | | | || | |
|
|
| T |
7119339 |
tatttctaatttgtccagcgtggtacttgatatggatagattttgttccccaagaattttaaaatcagaaagcatcaaactattcaacttagtaaacccc |
7119240 |
T |
|
| Q |
322 |
gaaaaaggctcggctccaccacgaaaggcgacatcccctagatgcaagcgagttaatgctggcaaattcagataatcaggaaaaaatattttctt |
416 |
Q |
| |
|
|||||||| || |||| |||||||||| |||| || ||||| ||||| || | || ||||||||||||| ||| ||||| |||||| |||| |
|
|
| T |
7119239 |
gaaaaaggatcatctccgccacgaaaggagacaagccatagatacaagctggtcactgatggcaaattcagagaattcggaaataatattctctt |
7119145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 50; E-Value: 7e-19
Query Start/End: Original strand, 222 - 371
Target Start/End: Original strand, 7103778 - 7103927
Alignment:
| Q |
222 |
tatttttaatttgacaagcgtggtacttgatatgtatagattttgttcaccaataatttcaaaattagaaatcatcaaactattcaatcttggatacgct |
321 |
Q |
| |
|
|||| ||||||| ||||||||| ||||||||||| |||||||||||||||| | ||||| | || ||||||| ||||||| ||||| | ||| || | |
|
|
| T |
7103778 |
tattgttaattttacaagcgtgatacttgatatgcatagattttgttcacccaaaattttagaacaagaaatcctcaaacttttcaacatgggaaaccca |
7103877 |
T |
|
| Q |
322 |
gaaaaaggctcggctccaccacgaaaggcgacatcccctagatgcaagcg |
371 |
Q |
| |
|
|||||||| || ||||||||| |||||| |||| ||||| ||||||||| |
|
|
| T |
7103878 |
gaaaaaggatcagctccaccaagaaaggagacagaccctatatgcaagcg |
7103927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 48; E-Value: 1e-17
Query Start/End: Original strand, 650 - 813
Target Start/End: Complemental strand, 7118888 - 7118725
Alignment:
| Q |
650 |
agagtcttaaattgtgaagaaattaatgtaagggttggaagacgtttccaaagattcttccatcttttggacaagatacaagtttgaatggctagtttag |
749 |
Q |
| |
|
||||||||||| ||||||||| ||| ||||||||| |||||| | ||||| ||||| |||||||||||||| | ||| ||||||||| || | |||| |
|
|
| T |
7118888 |
agagtcttaaagtgtgaagaagttagtgtaagggtgggaagatgcttccatagatttttccatcttttggagagaatagaagtttgaacggtttgtttga |
7118789 |
T |
|
| Q |
750 |
tatccaaagaggagagtatttgaagaagaacacaatcgggtaaatcacttaacctatcttcctt |
813 |
Q |
| |
|
| ||||||||||||||| ||||||| || | ||| ||||||||||| | ||||||||||| |
|
|
| T |
7118788 |
ctttcaaagaggagagtatgtgaagaataaggccatctggtaaatcactgattctatcttcctt |
7118725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000007
Query Start/End: Original strand, 686 - 737
Target Start/End: Complemental strand, 21537125 - 21537074
Alignment:
| Q |
686 |
ggaagacgtttccaaagattcttccatcttttggacaagatacaagtttgaa |
737 |
Q |
| |
|
|||||| |||||||||||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
21537125 |
ggaagatgtttccaaagatccttccatcttttggataagatacaagtttgaa |
21537074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000004
Query Start/End: Original strand, 672 - 792
Target Start/End: Complemental strand, 7178052 - 7177932
Alignment:
| Q |
672 |
ttaatgtaagggttggaagacgtttccaaagattcttccatcttttggacaagatacaagtttgaatggctagtttagtatccaaagaggagagtatttg |
771 |
Q |
| |
|
||||| ||||||||| |||||||||||||||||| ||||||||| ||||| | ||||||||||| || ||| || | |||| ||||| |||| || |
|
|
| T |
7178052 |
ttaatctaagggttgaaagacgtttccaaagattgttccatcttcaagacaaaacacaagtttgaaaagcgtatttggtgttcaaaaaggagtgtatgtg |
7177953 |
T |
|
| Q |
772 |
aagaagaacacaatcgggtaa |
792 |
Q |
| |
|
||| ||||||||||| ||||| |
|
|
| T |
7177952 |
aagtagaacacaatccggtaa |
7177932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.0000000002
Query Start/End: Original strand, 678 - 737
Target Start/End: Complemental strand, 25601803 - 25601744
Alignment:
| Q |
678 |
taagggttggaagacgtttccaaagattcttccatcttttggacaagatacaagtttgaa |
737 |
Q |
| |
|
||||||| |||| |||||||||||||| |||||||||| ||||||| || |||||||||| |
|
|
| T |
25601803 |
taagggtgggaatacgtttccaaagatacttccatcttgtggacaaaatgcaagtttgaa |
25601744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 731 - 798
Target Start/End: Original strand, 7104313 - 7104380
Alignment:
| Q |
731 |
gtttgaatggctagtttagtatccaaagaggagagtatttgaagaagaacacaatcgggtaaatcact |
798 |
Q |
| |
|
||||||| |||| |||| |||| ||||||||||||||| ||||||||||||| || || |||||||| |
|
|
| T |
7104313 |
gtttgaacggcttgtttggtatgcaaagaggagagtatgcgaagaagaacacagtccggcaaatcact |
7104380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 686 - 737
Target Start/End: Complemental strand, 21521488 - 21521437
Alignment:
| Q |
686 |
ggaagacgtttccaaagattcttccatcttttggacaagatacaagtttgaa |
737 |
Q |
| |
|
|||||| ||||| |||||| ||||||||||||||| ||||||||||| |||| |
|
|
| T |
21521488 |
ggaagatgtttctaaagatccttccatcttttggataagatacaagtctgaa |
21521437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.0000002
Query Start/End: Original strand, 664 - 742
Target Start/End: Complemental strand, 476149 - 476071
Alignment:
| Q |
664 |
tgaagaaattaatgtaagggttggaagacgtttccaaagattcttccatcttttggacaagatacaagtttgaatggct |
742 |
Q |
| |
|
||||||| ||| ||||||||| |||||| ||||| ||||| ||||||||||||| || ||||||||||||| |||| |
|
|
| T |
476149 |
tgaagaacttagtgtaagggtgggaagagtattccagagattgatccatcttttggataaaatacaagtttgaacggct |
476071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.0000002
Query Start/End: Original strand, 657 - 735
Target Start/End: Original strand, 778168 - 778246
Alignment:
| Q |
657 |
taaattgtgaagaaattaatgtaagggttggaagacgtttccaaagattcttccatcttttggacaagatacaagtttg |
735 |
Q |
| |
|
|||| ||||||||| |||||||||| || || ||| |||||| ||||| |||||||||||||||| || |||||||| |
|
|
| T |
778168 |
taaagtgtgaagaacttaatgtaagagtgggtagaattttccagagattgatccatcttttggacaaaatgcaagtttg |
778246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 123 - 188
Target Start/End: Original strand, 7103676 - 7103741
Alignment:
| Q |
123 |
tagtatctcgaaaggtgtaccgacaaaagcaaaagtacaaagacctggcgtcaataactcaatttt |
188 |
Q |
| |
|
|||||||| ||||| |||||||||||| |||| | |||||||| |||||| ||||||||||||| |
|
|
| T |
7103676 |
tagtatctgaaaaggagtaccgacaaaaacaaaggaacaaagacttggcgtagataactcaatttt |
7103741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 664 - 737
Target Start/End: Original strand, 13490903 - 13490976
Alignment:
| Q |
664 |
tgaagaaattaatgtaagggttggaagacgtttccaaagattcttccatcttttggacaagatacaagtttgaa |
737 |
Q |
| |
|
||||| ||||||||||||||| |||||| ||||| | |||||||||||||||||| || || ||||||||| |
|
|
| T |
13490903 |
tgaagcaattaatgtaagggtgggaagattcttccatacattcttccatcttttggataaaattaaagtttgaa |
13490976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 1e-20; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 1e-20
Query Start/End: Original strand, 678 - 802
Target Start/End: Original strand, 7140718 - 7140842
Alignment:
| Q |
678 |
taagggttggaagacgtttccaaagattcttccatcttttggacaagatacaagtttgaatggctagtttagtatccaaagaggagagtatttgaagaag |
777 |
Q |
| |
|
||||| ||||||||| ||||| | ||||||||||||||||||||| ||||||||||||| || |||||||| |||| | |||||||| ||||| | |
|
|
| T |
7140718 |
taaggcttggaagacacttccatatattcttccatcttttggacaaaatacaagtttgaactgcgtatttagtattcaaaaaagagagtatgtgaagtaa |
7140817 |
T |
|
| Q |
778 |
aacacaatcgggtaaatcacttaac |
802 |
Q |
| |
|
|||||| |||||||||||||||||| |
|
|
| T |
7140818 |
aacacagtcgggtaaatcacttaac |
7140842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 3e-18
Query Start/End: Original strand, 678 - 802
Target Start/End: Original strand, 8680332 - 8680456
Alignment:
| Q |
678 |
taagggttggaagacgtttccaaagattcttccatcttttggacaagatacaagtttgaatggctagtttagtatccaaagaggagagtatttgaagaag |
777 |
Q |
| |
|
||||| ||||||||| ||||| | ||||||||||||||||||||| ||||||||||||| || |||||||| |||| | |||||||| ||||| | |
|
|
| T |
8680332 |
taaggcttggaagacacttccatatattcttccatcttttggacaaaatacaagtttgaactgcgtatttagtattcaaaaaagagagtatgtgaagtaa |
8680431 |
T |
|
| Q |
778 |
aacacaatcgggtaaatcacttaac |
802 |
Q |
| |
|
|||||| |||| ||||||||||||| |
|
|
| T |
8680432 |
aacacagtcggctaaatcacttaac |
8680456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 44; E-Value: 0.000000000000003
Query Start/End: Original strand, 678 - 801
Target Start/End: Original strand, 7115528 - 7115651
Alignment:
| Q |
678 |
taagggttggaagacgtttccaaagattcttccatcttttggacaagatacaagtttgaatggctagtttagtatccaaagaggagagtatttgaagaag |
777 |
Q |
| |
|
||||| ||||||||| ||||| ||||||||||||||||||||||| | ||||||||||| || ||| || | |||| | |||||||| ||||| | |
|
|
| T |
7115528 |
taaggcttggaagacacttccagagattcttccatcttttggacaaaacacaagtttgaactgcgtatttggtgttcaaaaaagagagtatgtgaagtaa |
7115627 |
T |
|
| Q |
778 |
aacacaatcgggtaaatcacttaa |
801 |
Q |
| |
|
||||||||| |||||||||||||| |
|
|
| T |
7115628 |
aacacaatcaggtaaatcacttaa |
7115651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 44; E-Value: 0.000000000000003
Query Start/End: Original strand, 678 - 801
Target Start/End: Original strand, 7120600 - 7120723
Alignment:
| Q |
678 |
taagggttggaagacgtttccaaagattcttccatcttttggacaagatacaagtttgaatggctagtttagtatccaaagaggagagtatttgaagaag |
777 |
Q |
| |
|
||||| ||||||||| ||||| ||||||||||||||||||||||| | ||||||||||| || ||| || | |||| | |||||||| ||||| | |
|
|
| T |
7120600 |
taaggcttggaagacacttccagagattcttccatcttttggacaaaacacaagtttgaactgcgtatttggtgttcaaaaaagagagtatgtgaagtaa |
7120699 |
T |
|
| Q |
778 |
aacacaatcgggtaaatcacttaa |
801 |
Q |
| |
|
||||||||| |||||||||||||| |
|
|
| T |
7120700 |
aacacaatcaggtaaatcacttaa |
7120723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 44; E-Value: 0.000000000000003
Query Start/End: Original strand, 678 - 801
Target Start/End: Original strand, 7124004 - 7124127
Alignment:
| Q |
678 |
taagggttggaagacgtttccaaagattcttccatcttttggacaagatacaagtttgaatggctagtttagtatccaaagaggagagtatttgaagaag |
777 |
Q |
| |
|
||||| ||||||||| ||||| ||||||||||||||||||||||| | ||||||||||| || ||| || | |||| | |||||||| ||||| | |
|
|
| T |
7124004 |
taaggcttggaagacacttccagagattcttccatcttttggacaaaacacaagtttgaactgcgtatttggtgttcaaaaaagagagtatgtgaagtaa |
7124103 |
T |
|
| Q |
778 |
aacacaatcgggtaaatcacttaa |
801 |
Q |
| |
|
||||||||| |||||||||||||| |
|
|
| T |
7124104 |
aacacaatcaggtaaatcacttaa |
7124127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000007
Query Start/End: Original strand, 678 - 801
Target Start/End: Original strand, 8656633 - 8656756
Alignment:
| Q |
678 |
taagggttggaagacgtttccaaagattcttccatcttttggacaagatacaagtttgaatggctagtttagtatccaaagaggagagtatttgaagaag |
777 |
Q |
| |
|
||||| ||| |||||| ||||| ||||||||||||||||||| ||| | ||||||||||| || ||| || | |||| | |||||||| ||||| | |
|
|
| T |
8656633 |
taaggcttgtaagacgcttccagagattcttccatcttttggccaaaacacaagtttgaactgcgtatttggtgttcaaaaaagagagtatgtgaagtaa |
8656732 |
T |
|
| Q |
778 |
aacacaatcgggtaaatcacttaa |
801 |
Q |
| |
|
|||||||||||| ||||||||||| |
|
|
| T |
8656733 |
aacacaatcggggaaatcacttaa |
8656756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.00000001
Query Start/End: Original strand, 654 - 798
Target Start/End: Original strand, 7175392 - 7175536
Alignment:
| Q |
654 |
tcttaaattgtgaagaaattaatgtaagggttggaagacgtttccaaagattcttccatcttttggacaagatacaagtttgaatggctagtttagtatc |
753 |
Q |
| |
|
||||||||||||||||| ||| | ||||| ||| ||| || ||||| |||||||||||||| |||| || || |||||||||| || | || || | |
|
|
| T |
7175392 |
tcttaaattgtgaagaacttactataaggtttgaaaggcgcttccagagattcttccatctagtggataaaatgcaagtttgaactgcgtgcttggtttt |
7175491 |
T |
|
| Q |
754 |
caaagaggagagtatttgaagaagaacacaatcgggtaaatcact |
798 |
Q |
| |
|
|| |||||||||| ||||| | ||||||||||||||| ||||| |
|
|
| T |
7175492 |
taacaaggagagtatgtgaagtaaaacacaatcgggtaactcact |
7175536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 5e-20; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 5e-20
Query Start/End: Original strand, 679 - 798
Target Start/End: Complemental strand, 32413719 - 32413600
Alignment:
| Q |
679 |
aagggttggaagacgtttccaaagattcttccatcttttggacaagatacaagtttgaatggctagtttagtatccaaagaggagagtatttgaagaaga |
778 |
Q |
| |
|
||||| ||||||||| ||||| ||||||||||||||| ||||||| || |||||||||| ||| |||| || | ||||||||||||||| ||||| | | |
|
|
| T |
32413719 |
aagggatggaagacgcttccagagattcttccatcttgtggacaaaatgcaagtttgaacggcgtgtttggtgttcaaagaggagagtatgtgaagtaaa |
32413620 |
T |
|
| Q |
779 |
acacaatcgggtaaatcact |
798 |
Q |
| |
|
|||||||| | ||||||||| |
|
|
| T |
32413619 |
acacaatcagataaatcact |
32413600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.000000000003
Query Start/End: Original strand, 664 - 798
Target Start/End: Complemental strand, 6889256 - 6889122
Alignment:
| Q |
664 |
tgaagaaattaatgtaagggttggaagacgtttccaaagattcttccatcttttggacaagatacaagtttgaatggctagtttagtatccaaagaggag |
763 |
Q |
| |
|
||||||| ||||| ||||||| |||||| |||||| ||||| |||||||||||||| | || |||||||||| || | | || |||||| | ||| |
|
|
| T |
6889256 |
tgaagaacttaatataagggtaggaagatatttccagagattgttccatcttttggatagaatgcaagtttgaacagcgtctatggtgtccaaaaaagag |
6889157 |
T |
|
| Q |
764 |
agtatttgaagaagaacacaatcgggtaaatcact |
798 |
Q |
| |
|
||||| ||||||| ||||||||||||||| ||||| |
|
|
| T |
6889156 |
agtatgtgaagaataacacaatcgggtaagtcact |
6889122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.00000000001
Query Start/End: Original strand, 686 - 798
Target Start/End: Complemental strand, 6844215 - 6844105
Alignment:
| Q |
686 |
ggaagacgtttccaaagattcttccatcttttggacaagatacaagtttgaatggctagtttagtatccaaagaggagagtatttgaagaagaacacaat |
785 |
Q |
| |
|
|||||| ||||||||||||| |||||||||||||| | || |||||||||| || || | ||||||| | |||||||| ||||||| |||||||| |
|
|
| T |
6844215 |
ggaagatgtttccaaagattgttccatcttttggatagaatgcaagtttgaacagcgcatt--gcatccaaaaaagagagtatgtgaagaataacacaat |
6844118 |
T |
|
| Q |
786 |
cgggtaaatcact |
798 |
Q |
| |
|
||||||||||||| |
|
|
| T |
6844117 |
cgggtaaatcact |
6844105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.00000000001
Query Start/End: Original strand, 421 - 482
Target Start/End: Original strand, 30597936 - 30597997
Alignment:
| Q |
421 |
gttctaggatgagcaacataaaggttaagagaggttaaagtgtgacatgagaaaaagcaaga |
482 |
Q |
| |
|
|||||||| || ||||| |||||| |||||||||||||||||||||||| ||||||||||| |
|
|
| T |
30597936 |
gttctagggggaccaacacaaaggtcaagagaggttaaagtgtgacatgaaaaaaagcaaga |
30597997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 918 - 951
Target Start/End: Complemental strand, 32413705 - 32413672
Alignment:
| Q |
918 |
gcttcaagagattcttccatcttgtggacaaaat |
951 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| |
|
|
| T |
32413705 |
gcttccagagattcttccatcttgtggacaaaat |
32413672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 1e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 1e-17
Query Start/End: Original strand, 611 - 798
Target Start/End: Original strand, 27701821 - 27702008
Alignment:
| Q |
611 |
agagacaaaacttgcgacacaaatttgtcaaaattcgttagagtcttaaattgtgaagaaattaatgtaagggttggaagacgtttccaaagattcttcc |
710 |
Q |
| |
|
||||||||||| | ||||| |||||| |||| || | ||||| ||||| ||||| || ||||| |||||||||||||||||||||| ||||| |||| |
|
|
| T |
27701821 |
agagacaaaacccgagacacgaatttggtaaaactcttgagagttttaaagtgtgaggagtttaatctaagggttggaagacgtttccagagattgttcc |
27701920 |
T |
|
| Q |
711 |
atcttttggacaagatacaagtttgaatggctagtttagtatccaaagaggagagtatttgaagaagaacacaatcgggtaaatcact |
798 |
Q |
| |
|
||||| |||| | || |||||||| ||| |||| || || |||||||||||||| |||| |||| ||||||||||||||||| |
|
|
| T |
27701921 |
atcttgtggaaagaatggtagtttgaacggcatgtttggtttctaaagaggagagtatgtgaaagagaatgcaatcgggtaaatcact |
27702008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.00000001
Query Start/End: Original strand, 673 - 737
Target Start/End: Original strand, 43875203 - 43875267
Alignment:
| Q |
673 |
taatgtaagggttggaagacgtttccaaagattcttccatcttttggacaagatacaagtttgaa |
737 |
Q |
| |
|
||||||||| || ||||||| ||||||||||| |||||||||||||||| || |||||||||| |
|
|
| T |
43875203 |
taatgtaagagtgggaagactcttccaaagattgatccatcttttggacaaaatgcaagtttgaa |
43875267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0896 (Bit Score: 32; Significance: 0.00000004; HSPs: 2)
Name: scaffold0896
Description:
Target: scaffold0896; HSP #1
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 678 - 737
Target Start/End: Complemental strand, 1553 - 1494
Alignment:
| Q |
678 |
taagggttggaagacgtttccaaagattcttccatcttttggacaagatacaagtttgaa |
737 |
Q |
| |
|
||||| ||| |||||| ||||| ||||||||||||||||||| ||| | ||||||||||| |
|
|
| T |
1553 |
taaggcttgtaagacgcttccagagattcttccatcttttggccaaaacacaagtttgaa |
1494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0896; HSP #2
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 678 - 737
Target Start/End: Complemental strand, 2336 - 2277
Alignment:
| Q |
678 |
taagggttggaagacgtttccaaagattcttccatcttttggacaagatacaagtttgaa |
737 |
Q |
| |
|
||||| ||||||||| ||||| ||||||||||||||||||| ||| | ||||||||||| |
|
|
| T |
2336 |
taaggcttggaagacacttccagagattcttccatcttttggccaaaacacaagtttgaa |
2277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 728 - 801
Target Start/End: Complemental strand, 7022114 - 7022041
Alignment:
| Q |
728 |
caagtttgaatggctagtttagtatccaaagaggagagtatttgaagaagaacacaatcgggtaaatcacttaa |
801 |
Q |
| |
|
|||||||| ||||||| ||| || |||||| |||||||||| ||||| | || ||||| |||||||||||||| |
|
|
| T |
7022114 |
caagtttggatggctactttggtgtccaaaaaggagagtatgtgaagtacaagacaattaggtaaatcacttaa |
7022041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 672 - 713
Target Start/End: Original strand, 28928436 - 28928477
Alignment:
| Q |
672 |
ttaatgtaagggttggaagacgtttccaaagattcttccatc |
713 |
Q |
| |
|
||||||||||||| |||||||| ||||| ||||||||||||| |
|
|
| T |
28928436 |
ttaatgtaagggtgggaagacgcttccagagattcttccatc |
28928477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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