View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2858_low_14 (Length: 299)
Name: NF2858_low_14
Description: NF2858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2858_low_14 |
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| [»] scaffold0554 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-129; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 11 - 283
Target Start/End: Complemental strand, 23036942 - 23036670
Alignment:
| Q |
11 |
acatcatcaatgagcataaagaggaaaagtacacaaaagccaaagatgatcaaggtaaagtggaagaagatctggtagacgttctgttaaattacgagga |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||| |||||||||||||| |
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| T |
23036942 |
acatcatcaatgagcataaagaggaaaagtacacaaaagccaaagatgatcaaggtagagtagaagaagatctcgtagacgttctcttaaattacgagga |
23036843 |
T |
|
| Q |
111 |
tggtagaaaccaagacctttccttgacaaaaaacaatatcaaggccataatcatggtaagcgaattaactttccaaatacttcgaagaagaaaaactact |
210 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23036842 |
tggcagaaaccaagacctttccttgacaaaaaacaatatcaaggccataataatggtaagcgaattaactttccaaatacttcgaagaagaaaaactact |
23036743 |
T |
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| Q |
211 |
tttcaaaagaaaaatttaggtgaatagttaaaatctgcttgcatcttatatctctactctgtagcattggatg |
283 |
Q |
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|| |||||||||||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
23036742 |
ttacaaaagaaaaatttagatgaataattaaaatctgctcgcatcttatatctctactctgtagcattggatg |
23036670 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 11 - 179
Target Start/End: Complemental strand, 23039819 - 23039651
Alignment:
| Q |
11 |
acatcatcaatgagcataaagaggaaaagtacacaaaagccaaagatgatcaaggtaaagtggaagaagatctggtagacgttctgttaaattacgagga |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||| || ||||| |
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| T |
23039819 |
acatcatcaatgagcataaagaggaaaagtacacaaaagccaaagatgatcaaggtaaagtagaagaagatctcgtagacgttctcttaaaatatgagga |
23039720 |
T |
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| Q |
111 |
tggtagaaaccaagacctttccttgacaaaaaacaatatcaaggccataatcatggtaagcgaattaac |
179 |
Q |
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| T |
23039719 |
cggtagcaaccaggagtttaccttaacaaaaaacaatatcaaggccataatcctggtaagcaaattaac |
23039651 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 11 - 178
Target Start/End: Complemental strand, 23146694 - 23146527
Alignment:
| Q |
11 |
acatcatcaatgagcataaagaggaaaagtacacaaaagccaaagatgatcaaggtaaagtggaagaagatctggtagacgttctgttaaattacgagga |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| ||||| || ||||| |
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| T |
23146694 |
acatcatcaatgagcataaagaggaaaagtacacaaaagccaaagatgatcaaggtaaagtagaagaagatctgatagacgttctcttaaaatatgagga |
23146595 |
T |
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| Q |
111 |
tggtagaaaccaagacctttccttgacaaaaaacaatatcaaggccataatcatggtaagcgaattaa |
178 |
Q |
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| T |
23146594 |
cggtagcaaccaggagtttaccttaacaaaaaacaatatcaaggccataatcctggtaagcaaattaa |
23146527 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 11 - 170
Target Start/End: Complemental strand, 23018028 - 23017869
Alignment:
| Q |
11 |
acatcatcaatgagcataaagaggaaaagtacacaaaagccaaagatgatcaaggtaaagtggaagaagatctggtagacgttctgttaaattacgagga |
110 |
Q |
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||||||| |||| |||||| ||||||||||||||||| ||||| |||||||||| | || | |||||||||||||||| |||| ||||| || ||||| |
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| T |
23018028 |
acatcattgatgaacataaaagggaaaagtacacaaaagtcaaaggtgatcaaggtgaggtagcagaagatctggtagacattctcttaaaatatgagga |
23017929 |
T |
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| Q |
111 |
tggtagaaaccaagacctttccttgacaaaaaacaatatcaaggccataatcatggtaag |
170 |
Q |
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|||||| ||||||| | || || |||||| |||||||||||||||||||| ||||||| |
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| T |
23017928 |
tggtagtgaccaagatttctcattaacaaaagacaatatcaaggccataatcttggtaag |
23017869 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 192
Target Start/End: Complemental strand, 23033625 - 23033451
Alignment:
| Q |
11 |
acatcatcaatgagcataaagaggaaaagtacacaaaagccaaagatgatcaaggtaaagtggaagaagatctggtagacgttctgttaaattacgagga |
110 |
Q |
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|||||||| ||||||||||| ||| |||||||||||| ||| |||||||| || | |||||||||||||||| |||| ||||| || ||||| |
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| T |
23033625 |
acatcatcgatgagcataaaaaggcaaagtacacaaacgcc---------caaggtaaggtagtagaagatctggtagacattctcttaaaatatgagga |
23033535 |
T |
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| Q |
111 |
tggtagaaaccaagacctttccttgacaaaaaacaatatcaaggccataatcatggtaagcg-aattaact-ttccaaatactt |
192 |
Q |
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|||||| ||||||| | | ||| |||||| ||||||||||||| |||||| ||||||||| ||| |||| |||||||||||| |
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| T |
23033534 |
tggtagtgaccaagatttcttcttaacaaaagacaatatcaaggctataatcttggtaagcgtaataaactcttccaaatactt |
23033451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 170
Target Start/End: Complemental strand, 23149589 - 23149496
Alignment:
| Q |
77 |
aagatctggtagacgttctgttaaattacgaggatggtagaaaccaagacctttccttgacaaaaaacaatatcaaggccataatcatggtaag |
170 |
Q |
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||||||||||||| ||||| |||| || || ||||| || ||| | || ||| |||||| ||| |||||||||||||||||||| ||||||| |
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| T |
23149589 |
aagatctggtagatgttctcataaaatatgaagatggcagcaacaaggaatttttcttgaccaaagacaatatcaaggccataatcttggtaag |
23149496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 11 - 204
Target Start/End: Complemental strand, 21780709 - 21780514
Alignment:
| Q |
11 |
acatcatcaatgagcataaagaggaaaagtacacaaaagccaaagatgatcaaggtaaagtggaagaagatctggtagacgttctgttaaattacgagga |
110 |
Q |
| |
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|||||||||| || |||||||||| |||| |||||||| | ||||| ||| ||||| |||| ||||||||||| ||||||||||| ||||| || ||||| |
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| T |
21780709 |
acatcatcaaggaccataaagaggcaaagcacacaaaaccgaaagaagatgaaggtgaagtagaagaagatctcgtagacgttctcttaaaatatgagga |
21780610 |
T |
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| Q |
111 |
tggtagaaaccaagacctttccttgacaaaaaacaatatcaaggccataatcatggtaagcgaattaa-ct-ttccaaatacttcgaagaagaaaa |
204 |
Q |
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|||||| |||| || ||||||| |||||| ||||||||||||||||||| ||||||||| |||||| || |||||||||||||||||||||||| |
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| T |
21780609 |
tggtagcaacctggatttttccttaacaaaagacaatatcaaggccataataatggtaagccaattaatctcttccaaatacttcgaagaagaaaa |
21780514 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0554 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0554
Description:
Target: scaffold0554; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 73 - 171
Target Start/End: Original strand, 5803 - 5901
Alignment:
| Q |
73 |
gaagaagatctggtagacgttctgttaaattacgaggatggtagaaaccaagacctttccttgacaaaaaacaatatcaaggccataatcatggtaagc |
171 |
Q |
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||||||||||| |||||||||| ||||| || || |||||||| ||| | || ||||||| |||||| |||||||||| ||||| |||||||||||| |
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| T |
5803 |
gaagaagatctattagacgttctcttaaaatatgaagatggtagcaacaaggagttttccttaacaaaagacaatatcaaagccattatcatggtaagc |
5901 |
T |
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