View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2858_low_16 (Length: 283)
Name: NF2858_low_16
Description: NF2858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2858_low_16 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 148; Significance: 4e-78; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 11909872 - 11910038
Alignment:
| Q |
1 |
cttcgttaaccaatcgtctaatgttttttcttaagttaagaaacatgaaataaagagagaggtgaacaaagataagatcatcaatttcaactattggaga |
100 |
Q |
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| T |
11909872 |
cttcgttaaccaatcatctaatgttttttcttaagttaagaaacatgaaataaagagagaggtgaacagagataagatcatcaatttcaactattggaga |
11909971 |
T |
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| Q |
101 |
gatttggagcttgagttcaagcttatggatgcttctggaacaacattcatctcttcttcttttagtta |
168 |
Q |
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| T |
11909972 |
gatttggagcttgagttcaagcttatggatgcttctcgaacaacattcatctcttctt-ttttagtta |
11910038 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 11918078 - 11917912
Alignment:
| Q |
1 |
cttcgttaaccaatcgtctaatgttttttcttaagttaagaaacatgaaataaagagagaggtgaacaaagataagatcatcaatttcaactattggaga |
100 |
Q |
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| T |
11918078 |
cttcgttaaccaatcatctaatgttttttcttaagttaagaaacatgaaataaagagagaggtgaacagagataagatcatcaatttcaactattggaga |
11917979 |
T |
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| Q |
101 |
gatttggagcttgagttcaagcttatggatgcttctggaacaacattcatctcttcttcttttagtta |
168 |
Q |
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| T |
11917978 |
gatttggagcttgagttcaagcttatggatgcttctcgaacaacattcatctcttctt-ttttagtta |
11917912 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 218 - 283
Target Start/End: Original strand, 11910037 - 11910102
Alignment:
| Q |
218 |
tagctaggaatataatgtattacttttaatctagtcgattgtatatgatttatatattcaatataa |
283 |
Q |
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| T |
11910037 |
tagctaggaatctaatgtattacttttaatctagtcgattgtatatgatttatgtattcaatataa |
11910102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 218 - 283
Target Start/End: Complemental strand, 11917913 - 11917848
Alignment:
| Q |
218 |
tagctaggaatataatgtattacttttaatctagtcgattgtatatgatttatatattcaatataa |
283 |
Q |
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| T |
11917913 |
tagctaggaatctaatgtattacttttaatctagtcgattgtatatgatttatgtattcaatataa |
11917848 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 215 - 283
Target Start/End: Original strand, 32044590 - 32044658
Alignment:
| Q |
215 |
aagtagctaggaatataatgtattacttttaatctagtcgattgtatatgatttatatattcaatataa |
283 |
Q |
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| T |
32044590 |
aagtagctaggattttaatgtattactcttaatctagctgattgtatatgatttatgcattcaatataa |
32044658 |
T |
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