View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2858_low_18 (Length: 262)
Name: NF2858_low_18
Description: NF2858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2858_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 6 - 249
Target Start/End: Original strand, 18256216 - 18256462
Alignment:
| Q |
6 |
atgagtttcttactactttgacaaaccagcgatggttgaaatttggttttcaattcaataacattcgtatttaagtaaatagattgctataaatggttga |
105 |
Q |
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| T |
18256216 |
atgagtttcttactactttgactaaccaacgatggttgaaatttggttttcaattcaataacattcgtatttaaataaatagattgctataaatggttga |
18256315 |
T |
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| Q |
106 |
agaccnnnnnnnnnnngttgaaggggtgtttagtgtccgacacatatcaatgtctgacacaagttgcattcattcaattcc----attttcttatattat |
201 |
Q |
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| T |
18256316 |
agaccaaaaaaaaaa-gttgaaggggtgtttagtgtccgacacatatcaatgtctgacacaagttgcattcattcaattccattaattttcttatattat |
18256414 |
T |
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| Q |
202 |
tattagtgtcagtgtcaggtttagtgttcgcatctgtgtttgtctttc |
249 |
Q |
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| T |
18256415 |
tattagtgtcagtgtcaggtttagtgttcgcatctgtgtttatctttc |
18256462 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 167
Target Start/End: Complemental strand, 16315974 - 16315930
Alignment:
| Q |
123 |
ttgaaggggtgtttagtgtccgacacatatcaatgtctgacacaa |
167 |
Q |
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| T |
16315974 |
ttgaagggatgtctagtgtccgacacgtctcaatgtctgacacaa |
16315930 |
T |
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