View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2858_low_19 (Length: 255)

Name: NF2858_low_19
Description: NF2858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2858_low_19
NF2858_low_19
[»] chr2 (3 HSPs)
chr2 (1-238)||(1361958-1362195)
chr2 (1-238)||(1355072-1355309)
chr2 (6-225)||(20492756-20492975)
[»] chr4 (2 HSPs)
chr4 (6-238)||(29954608-29954840)
chr4 (8-239)||(51369615-51369846)
[»] chr3 (1 HSPs)
chr3 (6-238)||(11531921-11532153)
[»] chr6 (3 HSPs)
chr6 (3-238)||(12846586-12846821)
chr6 (1-223)||(14622704-14622926)
chr6 (1-223)||(14589046-14589268)


Alignment Details
Target: chr2 (Bit Score: 238; Significance: 1e-132; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 1362195 - 1361958
Alignment:
Q  1 caagcaaataaggcagtgtcacaagaacatggccgaaatgaaccttctcaataacagaaccagaaccacagtgactcatacatccaccaattgctccatg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1362195 caagcaaataaggcagtgtcacaagaacatggccgaaatgaaccttctcaataacagaaccagaaccacagtgactcatacatccaccaattgctccatg 1362096  T
Q  101 agctaagattttaagctgaggtgcccatgtcttccaaacaattccgcgttctttcgttctttcctcaaatccttcaggtaattcaagtgtaccctctttc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1362095 agctaagattttaagctgaggtgcccatgtcttccaaacaattccgcgttctttcgttctttcctcaaatccttcaggtaattcaagtgtaccctctttc 1361996  T
Q  201 agattcttcaaagcccaaaagaaagacaacccagaaag 238  Q
    ||||||||||||||||||||||||||||||||||||||    
T  1361995 agattcttcaaagcccaaaagaaagacaacccagaaag 1361958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 1355309 - 1355072
Alignment:
Q  1 caagcaaataaggcagtgtcacaagaacatggccgaaatgaaccttctcaataacagaaccagaaccacagtgactcatacatccaccaattgctccatg 100  Q
    |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  1355309 caagcaaataaggcagtgtcacaagaacatggccaaaatgaaccttttcaataacagaaccagaaccacaatgactcatacatccaccaattgctccatg 1355210  T
Q  101 agctaagattttaagctgaggtgcccatgtcttccaaacaattccgcgttctttcgttctttcctcaaatccttcaggtaattcaagtgtaccctctttc 200  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||    
T  1355209 agctaagatcttaagctgaggtgcccatgtcttccaaacaattccgcgttctttcgtcctttcctcgaatccttcaggtaattcaagtgtaccctctttc 1355110  T
Q  201 agattcttcaaagcccaaaagaaagacaacccagaaag 238  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  1355109 agattcttcaaagtccaaaagaaagacaacccagaaag 1355072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 6 - 225
Target Start/End: Complemental strand, 20492975 - 20492756
Alignment:
Q  6 aaataaggcagtgtcacaagaacatggccgaaatgaaccttctcaataacagaaccagaaccacagtgactcatacatccaccaattgctccatgagcta 105  Q
    |||||||||| ||||||||| ||||| || ||||||| ||||||||| || ||||| |||||||| |||||||||||||||||||||| |||||||||||    
T  20492975 aaataaggcaatgtcacaagtacatgcccaaaatgaagcttctcaatgactgaacctgaaccacaatgactcatacatccaccaattgatccatgagcta 20492876  T
Q  106 agattttaagctgaggtgcccatgtcttccaaacaattccgcgttctttcgttctttcctcaaatccttcaggtaattcaagtgtaccctctttcagatt 205  Q
    |||| || ||||| ||||||||||| |||||||| |||||   |||||| |||||||| ||||||||||| ||||||||||||||||| ||||| || ||    
T  20492875 agatctttagctgtggtgcccatgttttccaaacgattccatattcttttgttctttcttcaaatccttcgggtaattcaagtgtaccttctttaaggtt 20492776  T
Q  206 cttcaaagcccaaaagaaag 225  Q
     |||||||||||||||||||    
T  20492775 tttcaaagcccaaaagaaag 20492756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 6 - 238
Target Start/End: Complemental strand, 29954840 - 29954608
Alignment:
Q  6 aaataaggcagtgtcacaagaacatggccgaaatgaaccttctcaataacagaaccagaaccacagtgactcatacatccaccaattgctccatgagcta 105  Q
    |||||||||| ||||||||| ||||| || ||||||| ||||||||| || ||||| |||||||| |||||||||||||||||||||| |||||||||||    
T  29954840 aaataaggcaatgtcacaaggacatgcccaaaatgaagcttctcaatgactgaacctgaaccacaatgactcatacatccaccaattgatccatgagcta 29954741  T
Q  106 agattttaagctgaggtgcccatgtcttccaaacaattccgcgttctttcgttctttcctcaaatccttcaggtaattcaagtgtaccctctttcagatt 205  Q
    |||| ||||| |||||||||||||| |||||||| ||||| | |||||| ||||||||||||||||||| |||||||||||||||||||||||| |||||    
T  29954740 agatcttaagttgaggtgcccatgttttccaaacgattccacattcttttgttctttcctcaaatcctttaggtaattcaagtgtaccctctttaagatt 29954641  T
Q  206 cttcaaagcccaaaagaaagacaacccagaaag 238  Q
     ||||||||||||||||||| ||||| ||||||    
T  29954640 tttcaaagcccaaaagaaaggcaacctagaaag 29954608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 8 - 239
Target Start/End: Original strand, 51369615 - 51369846
Alignment:
Q  8 ataaggcagtgtcacaagaacatggccgaaatgaaccttctcaataacagaaccagaaccacagtgactcatacatccaccaattgctccatgagctaag 107  Q
    |||||||| ||| ||||||||||| || | ||||| | ||||||  || ||||    ||||||||||||||||||||||||||||| |  ||||||||||    
T  51369615 ataaggcaatgtgacaagaacatgcccaagatgaagcatctcaacgactgaacttccaccacagtgactcatacatccaccaattgatggatgagctaag 51369714  T
Q  108 attttaagctgaggtgcccatgtcttccaaacaattccgcgttctttcgttctttcctcaaatccttcaggtaattcaagtgtaccctctttcagattct 207  Q
    ||||| | ||| ||| |||| || |||||||||||||| |||||||| ||||||||||| ||||||| ||||||||||  |  ||| |||||  |||  |    
T  51369715 attttgatctggggtacccaggttttccaaacaattccacgttcttttgttctttcctcgaatccttgaggtaattcagatacaccgtctttacgatctt 51369814  T
Q  208 tcaaagcccaaaagaaagacaacccagaaagt 239  Q
    ||||||||||||||||||  ||||||||||||    
T  51369815 tcaaagcccaaaagaaaggtaacccagaaagt 51369846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 141; Significance: 5e-74; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 6 - 238
Target Start/End: Complemental strand, 11532153 - 11531921
Alignment:
Q  6 aaataaggcagtgtcacaagaacatggccgaaatgaaccttctcaataacagaaccagaaccacagtgactcatacatccaccaattgctccatgagcta 105  Q
    |||||||||| |||||||||| |||| || ||||||| ||||||||| || ||||| |||||||||||||||||||||||||| |||| |||||| ||||    
T  11532153 aaataaggcaatgtcacaagagcatgcccaaaatgaagcttctcaatgactgaacctgaaccacagtgactcatacatccaccgattgatccatgtgcta 11532054  T
Q  106 agattttaagctgaggtgcccatgtcttccaaacaattccgcgttctttcgttctttcctcaaatccttcaggtaattcaagtgtaccctctttcagatt 205  Q
    |||| ||||| || ||||||||||| |||||||||||||| |||||||| ||||||||||||||| ||| |||||||||||||||||||||||| |||||    
T  11532053 agatcttaagttgtggtgcccatgttttccaaacaattccacgttcttttgttctttcctcaaattctttaggtaattcaagtgtaccctctttaagatt 11531954  T
Q  206 cttcaaagcccaaaagaaagacaacccagaaag 238  Q
     ||||||||||||||||||| ||||| ||||||    
T  11531953 tttcaaagcccaaaagaaaggcaacctagaaag 11531921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 108; Significance: 2e-54; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 3 - 238
Target Start/End: Complemental strand, 12846821 - 12846586
Alignment:
Q  3 agcaaataaggcagtgtcacaagaacatggccgaaatgaaccttctcaataacagaaccagaaccacagtgactcatacatccaccaattgctccatgag 102  Q
    ||||||||||||| ||| ||||||||||| || ||||| | ||||||||| || ||||| |||||||| ||||||||||| || |||||||||||||| |    
T  12846821 agcaaataaggcaatgtaacaagaacatgtccaaaatggagcttctcaatgactgaacctgaaccacaatgactcatacaccccccaattgctccatggg 12846722  T
Q  103 ctaagattttaagctgaggtgcccatgtcttccaaacaattccgcgttctttcgttctttcctcaaatccttcaggtaattcaagtgtaccctctttcag 202  Q
     |||||| |||||||| ||||||||||| |||||||||||||| |||||||| ||||  || || ||||||| |||||| ||||||||||||| ||| ||    
T  12846721 ataagatcttaagctggggtgcccatgttttccaaacaattccacgttctttggttcgatcttcgaatcctttaggtaactcaagtgtacccttttttag 12846622  T
Q  203 attcttcaaagcccaaaagaaagacaacccagaaag 238  Q
     || |||||||||||||||||||  |||| ||||||    
T  12846621 gtttttcaaagcccaaaagaaaggtaacctagaaag 12846586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 14622926 - 14622704
Alignment:
Q  1 caagcaaataaggcagtgtcacaagaacatggccgaaatgaaccttctcaataacagaaccagaaccacagtgactcatacatccaccaattgctccatg 100  Q
    |||| |||||||||| ||||||||||||||| || | ||||| | | ||||| || ||||  | |||||| ||| ||||||| |||| ||||| | ||||    
T  14622926 caagtaaataaggcaatgtcacaagaacatgcccaagatgaagcatttcaatgactgaactgggaccacaatgagtcatacaaccactaattgattcatg 14622827  T
Q  101 agctaagattttaagctgaggtgcccatgtcttccaaacaattccgcgttctttcgttctttcctcaaatccttcaggtaattcaagtgtaccctctttc 200  Q
    || |||||| |||| ||| |||||||| || ||||||||||||||||||||||| ||||||||||| || |||| ||| |||||||||  |||||||||     
T  14622826 agttaagatcttaaactggggtgcccaagttttccaaacaattccgcgttcttttgttctttcctcgaaccctttaggcaattcaagtacaccctcttta 14622727  T
Q  201 agattcttcaaagcccaaaagaa 223  Q
    ||||  || ||||||||||||||    
T  14622726 agatcttttaaagcccaaaagaa 14622704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 14589268 - 14589046
Alignment:
Q  1 caagcaaataaggcagtgtcacaagaacatggccgaaatgaaccttctcaataacagaaccagaaccacagtgactcatacatccaccaattgctccatg 100  Q
    |||| |||||||||| ||||||||||||||| || | || || | | ||||  || ||||  | |||||| ||| ||||||| |||||||||| ||||||    
T  14589268 caagtaaataaggcaatgtcacaagaacatgcccaagataaagcatttcaaagactgaacttggaccacaatgagtcatacaaccaccaattgatccatg 14589169  T
Q  101 agctaagattttaagctgaggtgcccatgtcttccaaacaattccgcgttctttcgttctttcctcaaatccttcaggtaattcaagtgtaccctctttc 200  Q
    || |||||| |||| ||| ||| |||| || ||||||||||||||||||||||| ||||||||||| || |||| ||| |||||||||  |||||||||     
T  14589168 agttaagatcttaaactggggtacccaagttttccaaacaattccgcgttcttttgttctttcctcgaaccctttaggcaattcaagtacaccctcttta 14589069  T
Q  201 agattcttcaaagcccaaaagaa 223  Q
    ||||  || ||||||||||||||    
T  14589068 agatcttttaaagcccaaaagaa 14589046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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