View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2858_low_20 (Length: 252)
Name: NF2858_low_20
Description: NF2858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2858_low_20 |
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| [»] scaffold0302 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 215; Significance: 1e-118; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 6 - 228
Target Start/End: Complemental strand, 1236568 - 1236346
Alignment:
| Q |
6 |
aggagcacagatggatgacaattgaatatctaggttttgatgtagataatgcaggtctgcaaagttctgtttttgtagctgttgcactctttttgcgagc |
105 |
Q |
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| T |
1236568 |
aggatcacagatggatgacaattgaatatctaggttttgatgtagataatgcaggtctgcaaagttctgtttttgtagctgttgcactctttttgcgagc |
1236469 |
T |
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| Q |
106 |
tttgtgttgctgttgggtgtgtttttagtgtgtaggggagttttccttctggcggtcctatgcagtttgctggttgcagcatatttggtgttgatatttt |
205 |
Q |
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| T |
1236468 |
tttgtgttgctgttgggtgtgtttttagtgtgtcggggagttttccttctggcggtcctatgcagtttgctggttgcagcatatttggtgttgatatttt |
1236369 |
T |
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| Q |
206 |
gtcgtcgatcatgtgttattgtc |
228 |
Q |
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| T |
1236368 |
gtcgtcgatcatgtgttattgtc |
1236346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 95 - 230
Target Start/End: Original strand, 1183239 - 1183373
Alignment:
| Q |
95 |
tttttgcgagctttgtgttgctgttgggtgtgtttttagtgtgtaggggagttttccttctggcggtcctatgcagtttgctggttgcagcatatttggt |
194 |
Q |
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| T |
1183239 |
tttttgcgcgcttcatgttgctgttgaatgtgtttttagtgtcgaggg-agttttccttctggtggtcctatgcagtttgctggctgcagcatagttggg |
1183337 |
T |
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| Q |
195 |
gttgatattttgtcgtcgatcatgtgttattgtctt |
230 |
Q |
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| T |
1183338 |
gttgatatttttgcatctgtcatgtgtgattgtctt |
1183373 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 141 - 205
Target Start/End: Original strand, 1194126 - 1194190
Alignment:
| Q |
141 |
gggagttttccttctggcggtcctatgcagtttgctggttgcagcatatttggtgttgatatttt |
205 |
Q |
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| T |
1194126 |
gggatttttccttctggtggtcctatgcagtttgctggctgcagcatagttggtgttgatatttt |
1194190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 1183182 - 1183244
Alignment:
| Q |
18 |
ggatgacaattgaatatctaggttttgatgtagataatgcaggtctgcaaagttctgtttttg |
80 |
Q |
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| T |
1183182 |
ggatggcaatagaatatctaggttttgatatagataatgtaggtctgctaagttctgtttttg |
1183244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 45 - 102
Target Start/End: Original strand, 1194054 - 1194111
Alignment:
| Q |
45 |
atgtagataatgcaggtctgcaaagttctgtttttgtagctgttgcactctttttgcg |
102 |
Q |
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| T |
1194054 |
atgtagataatgcagttctgccgagttctatttttgtagctgttgcagtatttttgcg |
1194111 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0302 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: scaffold0302
Description:
Target: scaffold0302; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 19 - 234
Target Start/End: Original strand, 20346 - 20565
Alignment:
| Q |
19 |
gatgacaattgaatatctaggttttgatgtagataatgcaggtctgcaaagttctgtttt----tgtagctgttgcactctttttgcgagctttgtgttg |
114 |
Q |
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| T |
20346 |
gatggcaatagaatatctaggtttcaatgtggataatgcaggtctgccgagttctgttttattttgtacctgttgcgctatttttgtgtgcttcgtgttg |
20445 |
T |
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| Q |
115 |
ctgttgggtgtgtttttagtgtgtaggggagttttccttctggcggtcctatgcagtttgctggttgcagcatatttggtgttgatattttgtcgtcgat |
214 |
Q |
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| T |
20446 |
ttgttgggtgtgtttttagtgtgctggggatttttccttctggtggtcctatacagtttgctggcagtaacatagttggagttgatattttgtgatctgt |
20545 |
T |
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| Q |
215 |
catgtgttattgtctttagg |
234 |
Q |
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| T |
20546 |
catgtgttattgtatttagg |
20565 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 163 - 234
Target Start/End: Complemental strand, 20256510 - 20256439
Alignment:
| Q |
163 |
ctatgcagtttgctggttgcagcatatttggtgttgatattttgtcgtcgatcatgtgttattgtctttagg |
234 |
Q |
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| T |
20256510 |
ctatgcagtttgttggctgcaacatagttggagttgatattttgtcatctgtcatgtgttattgtctttagg |
20256439 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 128 - 234
Target Start/End: Original strand, 12857370 - 12857476
Alignment:
| Q |
128 |
ttttagtgtgtaggggagttttccttctggcggtcctatgcagtttgctggttgcagcatatttggtgttgatattttgtcgtcgatcatgtgttattgt |
227 |
Q |
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| T |
12857370 |
ttttagtgtgctggggatttttccttctagtggtcctatgcaatttgctgacagcagcatagttggagttgatattttgtcatatgtcatgtgttattat |
12857469 |
T |
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| Q |
228 |
ctttagg |
234 |
Q |
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|||||| |
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| T |
12857470 |
atttagg |
12857476 |
T |
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