View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2858_low_31 (Length: 238)
Name: NF2858_low_31
Description: NF2858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2858_low_31 |
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Alignment Details
Target: chr5 (Bit Score: 186; Significance: 1e-101; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 10267609 - 10267841
Alignment:
| Q |
1 |
aatataagcaataggagcaaggatagaaagagcaagtagatctctgtagaggcaaaaaaccaactgattaaccccaacattaagggctactttggtaata |
100 |
Q |
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| T |
10267609 |
aatataagcaataggagcaaggatagaaagagcaagtagatctctgtagaggcaaaaaaccaactgattaaccccaacattaagggctactttggtaata |
10267708 |
T |
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| Q |
101 |
acatggtaaccaccattgaatagctgcaccattgccatagccaaatgggctttccatgcgtcacttcccattgatgttgccattg----------aaatt |
190 |
Q |
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| T |
10267709 |
acgtggtaaccaccattgaatagctgcaccattgccatagccaaatgggctttccatgtgtcacttcccattggtgttgccattgaaaaacaccaaaatt |
10267808 |
T |
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| Q |
191 |
ctagcttgatttctgaaattcaaacacaaagat |
223 |
Q |
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| T |
10267809 |
ctagcttgatttctgaaattcaaacacaaagat |
10267841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 29 - 173
Target Start/End: Complemental strand, 10284835 - 10284691
Alignment:
| Q |
29 |
agagcaagtagatctctgtagaggcaaaaaaccaactgattaaccccaacattaagggctactttggtaataacatggtaaccaccattgaatagctgca |
128 |
Q |
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| T |
10284835 |
agagcaaggagatccctatagaagcagaagactaattggttgactccagcattaagggccaccttagtaatgacatggtagccaccattgaatagctgta |
10284736 |
T |
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| Q |
129 |
ccattgccatagccaaatgggctttccatgcgtcacttcccattg |
173 |
Q |
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| T |
10284735 |
caactgccatgcccaaatgggccttccatgcttcacttcccattg |
10284691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 131
Target Start/End: Original strand, 10283028 - 10283130
Alignment:
| Q |
29 |
agagcaagtagatctctgtagaggcaaaaaaccaactgattaaccccaacattaagggctactttggtaataacatggtaaccaccattgaatagctgca |
128 |
Q |
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| T |
10283028 |
agagcaaggagatctctatagaagcagaagacaagttggttgactccaacattaagggcaactttggtgatgacatggtagccaccatataataactgca |
10283127 |
T |
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| Q |
129 |
cca |
131 |
Q |
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||| |
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| T |
10283128 |
cca |
10283130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 126
Target Start/End: Complemental strand, 10292590 - 10292502
Alignment:
| Q |
38 |
agatctctgtagaggcaaaaaaccaactgattaaccccaacattaagggctactttggtaataacatggtaaccaccattgaatagctg |
126 |
Q |
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| T |
10292590 |
agatctctatagaagcagaagactaattgattgactccagaattgagggctactttagtaataacatagtatccaccattgaaaagctg |
10292502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 96 - 213
Target Start/End: Original strand, 41883551 - 41883668
Alignment:
| Q |
96 |
taataacatggtaaccaccattgaatagctgcaccattgccatagccaaatgggctttccatgcgtcacttcccattgatgttgccattgaaattctagc |
195 |
Q |
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||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |
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| T |
41883551 |
taataacatggtaaccaccattgaataaccgcaccattgccatagccaaatgggctttccatctgtcacttcccattgctgttgccattgaaattctagc |
41883650 |
T |
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| Q |
196 |
ttgatttctgaaattcaa |
213 |
Q |
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| T |
41883651 |
ttaatttctgaaattcaa |
41883668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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