View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2858_low_33 (Length: 236)
Name: NF2858_low_33
Description: NF2858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2858_low_33 |
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| [»] scaffold0867 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 15 - 209
Target Start/End: Complemental strand, 45467541 - 45467347
Alignment:
| Q |
15 |
agatttttcctaaataaatttatcgttgacaatattcctcaaaagttaggttctttgttctttttgcagccggttctagtaaacaagcaatccatttggg |
114 |
Q |
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| T |
45467541 |
agatttttcctaaataaatttatcgttgacaatattcctcaaaagttaggttctttgttctttttgcagccggttctagtaaacaagcaatccatttggg |
45467442 |
T |
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| Q |
115 |
gtcatctttcaataatctctatatcttcaaacgtgaatttttcatgttcgatcatcttggtgaaaaatctgtcatgcatctaaaatgacggtgtt |
209 |
Q |
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| T |
45467441 |
gtcatctttcaataatctctatatcttcaaacgtgaatttttcatgttcgatcatcttggtgaaaaatctgtcatgcatctaaaatgacggtgtt |
45467347 |
T |
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Target: scaffold0867 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0867
Description:
Target: scaffold0867; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 133
Target Start/End: Complemental strand, 976 - 908
Alignment:
| Q |
65 |
ttctttgttctttttgcagccggttctagtaaacaagcaatccatttggggtcatctttcaataatctc |
133 |
Q |
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| T |
976 |
ttctttgttctttttgcagaatgttctggtaaacctgcaagccacttgggttcatctttcaataatctc |
908 |
T |
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