View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2858_low_34 (Length: 236)

Name: NF2858_low_34
Description: NF2858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2858_low_34
NF2858_low_34
[»] chr4 (2 HSPs)
chr4 (1-118)||(52364427-52364544)
chr4 (1-120)||(42492642-42492761)
[»] chr5 (3 HSPs)
chr5 (1-120)||(6696746-6696865)
chr5 (1-120)||(9935417-9935536)
chr5 (9-98)||(5665710-5665800)
[»] chr1 (4 HSPs)
chr1 (1-120)||(39345946-39346065)
chr1 (9-119)||(22908135-22908246)
chr1 (10-120)||(6911207-6911316)
chr1 (9-114)||(21529753-21529859)
[»] chr2 (1 HSPs)
chr2 (1-97)||(21935703-21935799)
[»] chr8 (6 HSPs)
chr8 (160-221)||(1954480-1954541)
chr8 (161-221)||(2026891-2026951)
chr8 (121-167)||(1958286-1958332)
chr8 (9-119)||(10644178-10644289)
chr8 (9-114)||(17506909-17507015)
chr8 (10-120)||(32661175-32661284)
[»] chr7 (6 HSPs)
chr7 (9-112)||(13323823-13323927)
chr7 (1-46)||(9972979-9973024)
chr7 (84-120)||(9972950-9972986)
chr7 (10-119)||(33378556-33378664)
chr7 (10-118)||(27214096-27214203)
chr7 (10-118)||(48160814-48160921)
[»] chr6 (1 HSPs)
chr6 (9-114)||(21506151-21506257)
[»] scaffold0697 (1 HSPs)
scaffold0697 (9-114)||(710-815)
[»] chr3 (1 HSPs)
chr3 (9-73)||(27426914-27426979)


Alignment Details
Target: chr4 (Bit Score: 114; Significance: 6e-58; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 52364544 - 52364427
Alignment:
Q  1 aaaactatttaaccaaacacttttttcatattttcctaggaataaaaatcacacctttatattccagggaaagatgattcctgggaataaattgtgtatc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  52364544 aaaactatttaaccaaacacttttttcatattttcctaggaataaaaatcacacctttatattccagggaaagataattcctgggaataaattgtgtatc 52364445  T
Q  101 catgaaacaaacgcaccc 118  Q
    ||||||||||||||||||    
T  52364444 catgaaacaaacgcaccc 52364427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 42492642 - 42492761
Alignment:
Q  1 aaaactatttaaccaaacacttttttcatattttcctaggaataaaaatcacacctttatattccagggaaagatgattcctgggaataaattgtgtatc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  42492642 aaaactatttaaccaaacacttttttcatattttcctaggaataaaaatcacacctttatattccagggaaagataattcctgagaataaattgtgtatc 42492741  T
Q  101 catgaaacaaacgcacccta 120  Q
    ||||||||||||||||||||    
T  42492742 catgaaacaaacgcacccta 42492761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 112; Significance: 9e-57; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 6696746 - 6696865
Alignment:
Q  1 aaaactatttaaccaaacacttttttcatattttcctaggaataaaaatcacacctttatattccagggaaagatgattcctgggaataaattgtgtatc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||    
T  6696746 aaaactatttaaccaaacacttttttcatattttcctaggaataaaaatcacacctttatattccagggaaagataattcctaggaataaattgtgtatc 6696845  T
Q  101 catgaaacaaacgcacccta 120  Q
    ||||||||||||||||||||    
T  6696846 catgaaacaaacgcacccta 6696865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 9935536 - 9935417
Alignment:
Q  1 aaaactatttaaccaaacacttttttcatattttcctaggaataaaaatcacacctttatattccagggaaagatgattcctgggaataaattgtgtatc 100  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |||||| |||||||||||||||||    
T  9935536 aaaactatttaaccaaacacttttttcatattttcctaagaataaaaatcacacctttatatttcagggaaagataattcctaggaataaattgtgtatc 9935437  T
Q  101 catgaaacaaacgcacccta 120  Q
    ||| ||||||||||||||||    
T  9935436 cataaaacaaacgcacccta 9935417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 98
Target Start/End: Complemental strand, 5665800 - 5665710
Alignment:
Q  9 ttaaccaaacacttttttca-tattttcctaggaataaaaatcacacctttatattccagggaaagatgattcctgggaataaattgtgta 98  Q
    |||||||||||||||||||  ||||||||| |||||||||||  | |||||| ||||| ||| ||| | ||||||||||||||||| ||||    
T  5665800 ttaaccaaacacttttttctgtattttcctgggaataaaaatttcccctttacattcctgggtaagttaattcctgggaataaattttgta 5665710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 108; Significance: 2e-54; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 39345946 - 39346065
Alignment:
Q  1 aaaactatttaaccaaacacttttttcatattttcctaggaataaaaatcacacctttatattccagggaaagatgattcctgggaataaattgtgtatc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| ||||||||||||||||||||||||    
T  39345946 aaaactatttaaccaaacacttttttcatattttcctaggaataaaaatcacacctttatattccagaaaaagataattcctgggaataaattgtgtatc 39346045  T
Q  101 catgaaacaaacgcacccta 120  Q
    ||||||||||||||||||||    
T  39346046 catgaaacaaacgcacccta 39346065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 119
Target Start/End: Original strand, 22908135 - 22908246
Alignment:
Q  9 ttaaccaaacacttttttc-atattttcctaggaataaaaatcacacctttatattccagggaaagatgattcctgggaataaattgtgtatccatgaaa 107  Q
    |||| |||||||||||||| |||||||||| ||||||||| |   ||||| | |||||  |||||| |||| |||||||||||||| |||| || | |||    
T  22908135 ttaatcaaacacttttttctatattttcctgggaataaaattttaaccttcacattcctaggaaagttgatacctgggaataaattttgtaaccctcaaa 22908234  T
Q  108 caaacgcaccct 119  Q
    ||||||| ||||    
T  22908235 caaacgccccct 22908246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 120
Target Start/End: Complemental strand, 6911316 - 6911207
Alignment:
Q  10 taaccaaacacttttttcatattttcctaggaataaaaatcacacctttatattccagggaaagatgattcctgggaataaattgtgtatccatgaaaca 109  Q
    ||||||||||  |||||||||  ||||| ||||||||| || || |||||||||||| |||| | | |||||| ||||||||||  |||  | |||||||    
T  6911316 taaccaaacatatttttcataaattccttggaataaaattcccatctttatattccaaggaatg-ttattcctaggaataaatttggtaaacttgaaaca 6911218  T
Q  110 aacgcacccta 120  Q
    ||| |||||||    
T  6911217 aacacacccta 6911207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 114
Target Start/End: Complemental strand, 21529859 - 21529753
Alignment:
Q  9 ttaaccaaacacttttttc-atattttcctaggaataaaaatcacacctttatattccagggaaagatgattcctgggaataaattgtgtatccatgaaa 107  Q
    ||||||||||||||||||| ||||||| || ||||||||| |   ||||| | ||||| ||||||| |||| |||| ||||| ||| |||| || | |||    
T  21529859 ttaaccaaacacttttttctatatttttctgggaataaaattttaaccttcacattcctgggaaagttgatacctgagaatagattttgtaaccctcaaa 21529760  T
Q  108 caaacgc 114  Q
    |||||||    
T  21529759 caaacgc 21529753  T

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Target: chr2 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 21935799 - 21935703
Alignment:
Q  1 aaaactatttaaccaaacacttttttcatattttcctaggaataaaaatcacacctttatattccagggaaagatgattcctgggaataaattgtgt 97  Q
    |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||| ||||||| |||||||||||||    
T  21935799 aaaactatttaaccaaacacttttttcatatttttctagaaataaaaatcacacctttatatttcagggaaagataattcctgagaataaattgtgt 21935703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 6e-27; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 160 - 221
Target Start/End: Complemental strand, 1954541 - 1954480
Alignment:
Q  160 taacaccactcttatttttgtggcatttatcttcaaaattttgtaaatttttatgggctatt 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1954541 taacaccactcttatttttgtggcatttatcttcaaaattttgtaaatttttatgggctatt 1954480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 161 - 221
Target Start/End: Original strand, 2026891 - 2026951
Alignment:
Q  161 aacaccactcttatttttgtggcatttatcttcaaaattttgtaaatttttatgggctatt 221  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  2026891 aacaccactcttatttttgtggcatttatctacaaaattttgtaaatttttatgggctatt 2026951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 121 - 167
Target Start/End: Complemental strand, 1958332 - 1958286
Alignment:
Q  121 tgttcgtgatctatttgtaagattgtctctcgagttatataacacca 167  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||    
T  1958332 tgttcgtgatctatttgtaagattgtctctcgagttatataagacca 1958286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 9 - 119
Target Start/End: Original strand, 10644178 - 10644289
Alignment:
Q  9 ttaaccaaacacttttttc-atattttcctaggaataaaaatcacacctttatattccagggaaagatgattcctgggaataaattgtgtatccatgaaa 107  Q
    ||||||||||||||||||| |||||||||| ||||||||| |   ||||| ||||||| || |||| |||| |||||||||| ||| |||| || | |||    
T  10644178 ttaaccaaacacttttttctatattttcctgggaataaaattttaaccttcatattcctggaaaagttgatacctgggaatagattttgtaaccctcaaa 10644277  T
Q  108 caaacgcaccct 119  Q
    ||||||| ||||    
T  10644278 caaacgccccct 10644289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 9 - 114
Target Start/End: Complemental strand, 17507015 - 17506909
Alignment:
Q  9 ttaaccaaacacttttttc-atattttcctaggaataaaaatcacacctttatattccagggaaagatgattcctgggaataaattgtgtatccatgaaa 107  Q
    ||||||||||||||||||| ||||||| || ||||||||| |   ||||| | ||||| ||||||| |||| |||||||||| ||| |||| || | |||    
T  17507015 ttaaccaaacacttttttctatatttttctgggaataaaattttaaccttcacattcctgggaaagttgatacctgggaatagattttgtaaccctcaaa 17506916  T
Q  108 caaacgc 114  Q
    |||||||    
T  17506915 caaacgc 17506909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 120
Target Start/End: Original strand, 32661175 - 32661284
Alignment:
Q  10 taaccaaacacttttttcatattttcctaggaataaaaatcacacctttatattccagggaaagatgattcctgggaataaattgtgtatccatgaaaca 109  Q
    ||||||||||  |||||||||  ||||| ||||||||| || || |||||||||||| |||| | | |||||| ||||||||||  |||  | |||||||    
T  32661175 taaccaaacatatttttcataaattccttggaataaaattcccatctttatattccaaggaatg-ttattcctaggaataaatttagtaaacttgaaaca 32661273  T
Q  110 aacgcacccta 120  Q
    ||| |||||||    
T  32661274 aacacacccta 32661284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 9e-17; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 9 - 112
Target Start/End: Complemental strand, 13323927 - 13323823
Alignment:
Q  9 ttaaccaaacacttttttca-tattttcctaggaataaaaatcacacctttatattccagggaaagatgattcctgggaataaattgtgtatccatgaaa 107  Q
    |||||||||||||||||||  |||||||||||||||||||||  | |||||| ||||| ||| ||| | ||||||||||||||||| |||| || | |||    
T  13323927 ttaaccaaacacttttttctgtattttcctaggaataaaaatttcccctttacattcctgggtaagttaattcctgggaataaattttgtaaccctcaaa 13323828  T
Q  108 caaac 112  Q
    |||||    
T  13323827 caaac 13323823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 9973024 - 9972979
Alignment:
Q  1 aaaactatttaaccaaacacttttttcatattttcctaggaataaa 46  Q
    |||||||||||||||||||||||||||||||||| |||||||||||    
T  9973024 aaaactatttaaccaaacacttttttcatatttttctaggaataaa 9972979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 84 - 120
Target Start/End: Complemental strand, 9972986 - 9972950
Alignment:
Q  84 ggaataaattgtgtatccatgaaacaaacgcacccta 120  Q
    |||||||||||||||||||||||||||||||||||||    
T  9972986 ggaataaattgtgtatccatgaaacaaacgcacccta 9972950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 119
Target Start/End: Complemental strand, 33378664 - 33378556
Alignment:
Q  10 taaccaaacacttttttcatattttcctaggaataaaaatcacacctttatattccagggaaagatgattcctgggaataaattgtgtatccatgaaaca 109  Q
    ||||||||||  |||||||||  ||||| ||||||||| || || |||||||||||| |||| | | |||||| ||||||||||  |||  | |||||||    
T  33378664 taaccaaacatatttttcataaattccttggaataaaattcccatctttatattccaaggaatg-ttattcctaggaataaatttggtaaacttgaaaca 33378566  T
Q  110 aacgcaccct 119  Q
    ||| ||||||    
T  33378565 aacacaccct 33378556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 118
Target Start/End: Original strand, 27214096 - 27214203
Alignment:
Q  10 taaccaaacacttttttcatattttcctaggaataaaaatcacacctttatattccagggaaagatgattcctgggaataaattgtgtatccatgaaaca 109  Q
    ||||||||||  |||||||||  ||||| ||||||||| || || |||||||||||| |||| | | |||||| ||||||||||  |||  | |||||||    
T  27214096 taaccaaacatatttttcataaattccttggaataaaattcccatctttatattccaaggaatg-ttattcctaggaataaatttggtaaacttgaaaca 27214194  T
Q  110 aacgcaccc 118  Q
    ||| |||||    
T  27214195 aacacaccc 27214203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 118
Target Start/End: Original strand, 48160814 - 48160921
Alignment:
Q  10 taaccaaacacttttttcatattttcctaggaataaaaatcacacctttatattccagggaaagatgattcctgggaataaattgtgtatccatgaaaca 109  Q
    ||||||||||  |||||||||  ||||| ||||||||| || || |||||||||||| |||| | | |||||| ||||||||||  |||  | |||||||    
T  48160814 taaccaaacatatttttcataaattccttggaataaaattcccatctttatattccaaggaatg-ttattcctaggaataaatttagtaaacttgaaaca 48160912  T
Q  110 aacgcaccc 118  Q
    ||| |||||    
T  48160913 aacacaccc 48160921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 9 - 114
Target Start/End: Original strand, 21506151 - 21506257
Alignment:
Q  9 ttaaccaaacacttttttc-atattttcctaggaataaaaatcacacctttatattccagggaaagatgattcctgggaataaattgtgtatccatgaaa 107  Q
    ||||||||||||||||||| |||||||||||||||||||| |   ||||| | ||||| || |||| |||| |||||||||  ||| |||| || | |||    
T  21506151 ttaaccaaacacttttttctatattttcctaggaataaaattttaaccttcacattcctggaaaagttgatacctgggaatcgattttgtaaccctcaaa 21506250  T
Q  108 caaacgc 114  Q
    |||||||    
T  21506251 caaacgc 21506257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0697 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0697
Description:

Target: scaffold0697; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 114
Target Start/End: Complemental strand, 815 - 710
Alignment:
Q  9 ttaaccaaacacttttttcatattttcctaggaataaaaatcacacctttatattccagggaaagatgattcctgggaataaattgtgtatccatgaaac 108  Q
    |||||||||||||||||  ||||||| || ||||||||| |   ||||| | ||||| ||||||| |||| |||| ||||| ||| |||| || | ||||    
T  815 ttaaccaaacactttttctatatttttctgggaataaaattttaaccttcacattcctgggaaagttgatacctgagaatagattttgtaaccctcaaac 716  T
Q  109 aaacgc 114  Q
    ||||||    
T  715 aaacgc 710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 73
Target Start/End: Original strand, 27426914 - 27426979
Alignment:
Q  9 ttaaccaaacacttttttc-atattttcctaggaataaaaatcacacctttatattccagggaaag 73  Q
    ||||||||||||||||||| |||||||||| ||||||||| |   ||||| | |||||||||||||    
T  27426914 ttaaccaaacacttttttctatattttcctcggaataaaattttaaccttcacattccagggaaag 27426979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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