View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2858_low_36 (Length: 231)
Name: NF2858_low_36
Description: NF2858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2858_low_36 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 1960501 - 1960285
Alignment:
| Q |
1 |
tcatcacacttttgcgaaaattgttcataactaaaccatagtcttttccactatccctgtttattgtatggaaatcatcatacttttctttatgttgtta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1960501 |
tcatcacacttttgcgaaaattgttcataactaaaccatagtcttttccactatccctgtttattgtatggaaatcatcatacttttctttatgttgtta |
1960402 |
T |
|
| Q |
101 |
gtaatgtaaaaatatcagaaaacatgaaaacagtgatttattatatgcaatggaaacaagatgaacagacagacaaatacataagttatcaaataaagtt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1960401 |
gtaatgtaaaaatatcagaaaacatgaaaacagtgatttgttatatgcaatggaaacaagatgaacagacagacaaatacataagttatcaaataaagtt |
1960302 |
T |
|
| Q |
201 |
aagaataatatcaaacc |
217 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
1960301 |
aagaataatatcaaacc |
1960285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 24 - 86
Target Start/End: Complemental strand, 5897205 - 5897143
Alignment:
| Q |
24 |
ttcataactaaaccatagtcttttccactatccctgtttattgtatggaaatcatcatacttt |
86 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||| |||| |
|
|
| T |
5897205 |
ttcataactaaaccatagtcttatccactatcggtgtctattgtatggaaatcatcatgcttt |
5897143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 204
Target Start/End: Complemental strand, 5897063 - 5897030
Alignment:
| Q |
171 |
agacaaatacataagttatcaaataaagttaaga |
204 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| |
|
|
| T |
5897063 |
agacaaatacataagctatcaaataaagttaaga |
5897030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University