View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2858_low_37 (Length: 212)
Name: NF2858_low_37
Description: NF2858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2858_low_37 |
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Alignment Details
Target: chr7 (Bit Score: 172; Significance: 1e-92; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 18 - 193
Target Start/End: Original strand, 31721763 - 31721938
Alignment:
| Q |
18 |
aaggtcttagaaatctcaaatataagcctagcctcaaatgcatcaccagaataaactttagaattagacacttgacgagcctttggaatccgtttcatac |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31721763 |
aaggtcttagaaatctcaaatataagcctagcctcaaatgcatcaccagaataacctttagaattagacacttgacgagcctttggaatccgtttcatac |
31721862 |
T |
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| Q |
118 |
caaacttgttatcagtgtttaaggcccctcctacattaccagccaacttcaacataaagttcatatacgtattctt |
193 |
Q |
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| T |
31721863 |
caaacttgttatcagtgtttaaggcccctcctacattaccagccaacttcaacataaagttcatatacgtattctt |
31721938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 18 - 193
Target Start/End: Original strand, 31711057 - 31711232
Alignment:
| Q |
18 |
aaggtcttagaaatctcaaatataagcctagcctcaaatgcatcaccagaataaactttagaattagacacttgacgagcctttggaatccgtttcatac |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31711057 |
aaggtcttagaaatctcaaatataagcctagcctcaaatgcatcaccagaataacctttagaattagacacttgacgagcctttggaatccgtttcatac |
31711156 |
T |
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| Q |
118 |
caaacttgttatcagtgtttaaggcccctcctacattaccagccaacttcaacataaagttcatatacgtattctt |
193 |
Q |
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| T |
31711157 |
caaacttgttatcagtattaaaggcccctcctacattaccagccaacttcaacataaagttcatatacgtattctt |
31711232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 18 - 193
Target Start/End: Original strand, 31719164 - 31719333
Alignment:
| Q |
18 |
aaggtcttagaaatctcaaatataagcctagcctcaaatgcatcaccagaataaactttagaattagacacttgacgagcctttggaatccgtttcatac |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |
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| T |
31719164 |
aaggtcttagaaatctcaaatataagcctagcctcaaacgcatcaccagaataacctttag------acacttgacgagcctttggaatccgtttcatac |
31719257 |
T |
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| Q |
118 |
caaacttgttatcagtgtttaaggcccctcctacattaccagccaacttcaacataaagttcatatacgtattctt |
193 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31719258 |
caaacttgttatcagtgtttaaggcccctcctacattaccagccaacttcaacataaagttcatatacgtattctt |
31719333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 24 - 193
Target Start/End: Original strand, 31716237 - 31716400
Alignment:
| Q |
24 |
ttagaaatctcaaatataagcctagcctcaaatgcatcaccagaataaactttagaattagacacttgacgagcctttggaatccgtttcataccaaact |
123 |
Q |
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|||||||||| ||| |||||||||||||| |||||||||||||||||| ||||||| |||||||||||||||||||||| ||||| |||||||| |
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| T |
31716237 |
ttagaaatctaaaaaataagcctagcctcgaatgcatcaccagaataacctttagat------acttgacgagcctttggaatccttttcacaccaaact |
31716330 |
T |
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| Q |
124 |
tgttatcagtgtttaaggcccctcctacattaccagccaacttcaacataaagttcatatacgtattctt |
193 |
Q |
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| T |
31716331 |
tgttatcagtgttcaatgcccctcctacattaccagccaacttcagcataaagttcatataagtattctt |
31716400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 31730222 - 31730169
Alignment:
| Q |
18 |
aaggtcttagaaatctcaaatataagcctagcctcaaatgcatcaccagaataa |
71 |
Q |
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|||| ||||||||||||||||||||| ||||||||||| ||||||| ||||||| |
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| T |
31730222 |
aaggccttagaaatctcaaatataagtctagcctcaaaagcatcacgagaataa |
31730169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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