View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2858_low_4 (Length: 489)
Name: NF2858_low_4
Description: NF2858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2858_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 453; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 18 - 481
Target Start/End: Complemental strand, 48707509 - 48707045
Alignment:
| Q |
18 |
tctttttcagcgggacatagttacgtttaagcatcaattctttgtttggatacttgagaaatgatccatatttctgatttgggattttagttgtacaagt |
117 |
Q |
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| T |
48707509 |
tctttttcagcgggacatagttacgtttaagcatcaattctttgtttggatacttgagaaatgatccatatttctgatttgggattttagttgtacaagt |
48707410 |
T |
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| Q |
118 |
acagttaacagccatcaagaaaaataaaagttctagaattggtgttgggtgggttgggctctgcctatatagtagtaacataataacgatctcatcatgc |
217 |
Q |
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| T |
48707409 |
acagttaacagccatcaagaaaaataaaagttctagaattggtgttgggtgggttgggctctgcctatatagtagtaacataataacgatctcatcatgc |
48707310 |
T |
|
| Q |
218 |
cattaaatgctaataaattcaattattggtggtttctgtcttatcattatgcattataattattattatagtcatgtggaaccaaagtcgcttatccctt |
317 |
Q |
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| T |
48707309 |
cattaaatgctaataaattcaattattggtggtttctgtcttatcattatgcattataattattattatagtcatgtggaaccaaagtcgcttatccctt |
48707210 |
T |
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| Q |
318 |
actt-ttttccctgccggtgaagtgaactccaactcataattttgtttcattcttgatagtgcttctgtcttatcgatcatctattcatcatttaatcaa |
416 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48707209 |
actttttttccctgccggtgaagtgaactccaactcataattttgtttcattcttgatagtgcttctgtcttatcgatcatctattcatcatttaatcaa |
48707110 |
T |
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| Q |
417 |
ttgattcatcagtagcagtttatacttcatacacggtattggtctaaaataagctagttcatctc |
481 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
48707109 |
ttgattcatcagtagcagtttatacttcatacacggtattggtctaaaataagccagttcatctc |
48707045 |
T |
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