View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2858_low_8 (Length: 406)

Name: NF2858_low_8
Description: NF2858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2858_low_8
NF2858_low_8
[»] chr2 (5 HSPs)
chr2 (73-349)||(37183152-37183428)
chr2 (159-249)||(3737235-3737325)
chr2 (155-249)||(5322128-5322223)
chr2 (157-187)||(8184230-8184260)
chr2 (81-138)||(36567399-36567457)
[»] chr1 (2 HSPs)
chr1 (155-218)||(17416757-17416820)
chr1 (160-243)||(50476520-50476604)
[»] chr8 (5 HSPs)
chr8 (155-246)||(43438306-43438397)
chr8 (160-218)||(22330673-22330731)
chr8 (156-216)||(37388251-37388311)
chr8 (159-192)||(42651628-42651661)
chr8 (156-216)||(3393961-3394021)
[»] chr3 (7 HSPs)
chr3 (155-213)||(49855853-49855912)
chr3 (155-246)||(1132937-1133029)
chr3 (155-216)||(15499341-15499403)
chr3 (156-249)||(24588292-24588386)
chr3 (156-213)||(7302064-7302120)
chr3 (156-216)||(13638400-13638461)
chr3 (201-249)||(50535110-50535159)
[»] chr7 (4 HSPs)
chr7 (155-249)||(24924589-24924683)
chr7 (222-256)||(38233728-38233762)
chr7 (154-216)||(42267049-42267111)
chr7 (197-249)||(32429940-32429991)
[»] chr5 (6 HSPs)
chr5 (155-216)||(6491161-6491223)
chr5 (155-249)||(9096296-9096391)
chr5 (155-249)||(19389827-19389921)
chr5 (154-191)||(5836864-5836901)
chr5 (155-192)||(6491390-6491427)
chr5 (162-218)||(18671017-18671073)
[»] chr4 (2 HSPs)
chr4 (160-249)||(42777299-42777387)
chr4 (155-191)||(53013583-53013619)
[»] scaffold0007 (1 HSPs)
scaffold0007 (159-250)||(68947-69038)
[»] chr6 (2 HSPs)
chr6 (249-313)||(8439289-8439353)
chr6 (197-249)||(26713883-26713935)


Alignment Details
Target: chr2 (Bit Score: 245; Significance: 1e-136; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 73 - 349
Target Start/End: Complemental strand, 37183428 - 37183152
Alignment:
73 gagagaaaggaggggagagtttggaaaaaagaacgagcaagtagaagaaacagaagatattagaagaggatgattttaagaagttcatttttcttcataa 172  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |||||||    
37183428 gagagaaaggaggggagagtttggaaaaaagaacgagcaagtagaagaaacataagatattagaagaggatgattttaataagttcattttttttcataa 37183329  T
173 tacaaaatttttctcattttaaggactcaaaaattgtattggagaaaatttttcgaggatttatatgaattcttcaatattatttataaatattaaatta 272  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
37183328 tacaaaatttttctcattttaaggactcaaaaattgtattggagaaaatttttcgagggtttatatgaattcttcaatattatttataaatattaaatta 37183229  T
273 tcattctcttaaaaataatctttcatacaatataaaagattccccattccctttattttccactcccaaaaccttta 349  Q
    |||||||||||||||||||||||||||||||||||||||||  || ||||||||||||||||||||||||| |||||    
37183228 tcattctcttaaaaataatctttcatacaatataaaagattatccgttccctttattttccactcccaaaatcttta 37183152  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 159 - 249
Target Start/End: Complemental strand, 3737325 - 3737235
Alignment:
159 atttttcttcataatacaaaatttttctcattttaaggactcaaaaattgtattggagaaaatttttcgaggatttatatgaattcttcaa 249  Q
    ||||||||||||||||||||||  | ||||||| ||| |||||||||||||||| || || | |||| |||  |||| || ||||||||||    
3737325 atttttcttcataatacaaaatcatcctcatttgaagaactcaaaaattgtattagaaaagagttttagagtgtttacataaattcttcaa 3737235  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 155 - 249
Target Start/End: Complemental strand, 5322223 - 5322128
Alignment:
155 gttcatttttcttcataatacaaaatttttctcattttaagg-actcaaaaattgtattggagaaaatttttcgaggatttatatgaattcttcaa 249  Q
    ||||||||||||||||||||||||||  | |||||||   || ||||||||| ||||||||| ||   |||| |||| |||||||||||| |||||    
5322223 gttcatttttcttcataatacaaaatcctcctcatttgggggaactcaaaaactgtattggaaaagggttttggagggtttatatgaattattcaa 5322128  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 157 - 187
Target Start/End: Complemental strand, 8184260 - 8184230
Alignment:
157 tcatttttcttcataatacaaaatttttctc 187  Q
    |||||||||||||||||||||||||||||||    
8184260 tcatttttcttcataatacaaaatttttctc 8184230  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 81 - 138
Target Start/End: Complemental strand, 36567457 - 36567399
Alignment:
81 ggaggggagagttt-ggaaaaaagaacgagcaagtagaagaaacagaagatattagaag 138  Q
    |||||||||||||| ||||||||||| |||||||| ||||||| |||||| ||| ||||    
36567457 ggaggggagagttttggaaaaaagaaggagcaagtggaagaaatagaagacattggaag 36567399  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 155 - 218
Target Start/End: Complemental strand, 17416820 - 17416757
Alignment:
155 gttcatttttcttcataatacaaaatttttctcattttaaggactcaaaaattgtattggagaa 218  Q
    ||||| |||||||||||||||||||| ||| |||||||  | ||||||||||||||||||||||    
17416820 gttcaattttcttcataatacaaaatctttttcattttgggaactcaaaaattgtattggagaa 17416757  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 160 - 243
Target Start/End: Original strand, 50476520 - 50476604
Alignment:
160 tttttcttcataatacaaaatttttctcattttaagga-ctcaaaaattgtattggagaaaatttttcgaggatttatatgaatt 243  Q
    ||||| |||||||||||||||    ||||||| | ||| ||||||||||||||||||| |   ||||||||| ||||||||||||    
50476520 tttttattcataatacaaaatccccctcatttgagggaactcaaaaattgtattggaggagggttttcgagggtttatatgaatt 50476604  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 155 - 246
Target Start/End: Complemental strand, 43438397 - 43438306
Alignment:
155 gttcatttttcttcataatacaaaatttttctcattttaaggactcaaaaattgtattggagaaaatttttcgaggatttatatgaattctt 246  Q
    ||||||||||||| ||||||||||||| ||| ||||| | | |||||||||||||||| ||| | | |||| |||  ||||||||| |||||    
43438397 gttcatttttctttataatacaaaattcttcccatttgaggaactcaaaaattgtattagagcataattttggagagtttatatgagttctt 43438306  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 218
Target Start/End: Original strand, 22330673 - 22330731
Alignment:
160 tttttcttcataatacaaaatttttctcattttaaggactcaaaaattgtattggagaa 218  Q
    |||||||||||||||||||||| | ||| ||||| | ||| ||||||||||||||||||    
22330673 tttttcttcataatacaaaattctcctctttttaggaactaaaaaattgtattggagaa 22330731  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 216
Target Start/End: Original strand, 37388251 - 37388311
Alignment:
156 ttcatttttcttcataatacaaaatttttctcattttaaggactcaaaaattgtattggag 216  Q
    |||||||||||| |||||| ||||| ||| ||||||   ||||||||||||||||||||||    
37388251 ttcatttttctttataataaaaaatctttttcatttgggggactcaaaaattgtattggag 37388311  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 192
Target Start/End: Original strand, 42651628 - 42651661
Alignment:
159 atttttcttcataatacaaaatttttctcatttt 192  Q
    ||||||||||||||||||||||||| ||||||||    
42651628 atttttcttcataatacaaaattttcctcatttt 42651661  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 156 - 216
Target Start/End: Original strand, 3393961 - 3394021
Alignment:
156 ttcatttttcttcataatacaaaatttttctcattttaaggactcaaaaattgtattggag 216  Q
    |||||||||||| ||||||||||||  | |||||||  || ||||||||||| ||||||||    
3393961 ttcatttttctttataatacaaaatcctcctcatttagagaactcaaaaattatattggag 3394021  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 155 - 213
Target Start/End: Complemental strand, 49855912 - 49855853
Alignment:
155 gttcatttttcttcataatacaaaatttttctcattttaagg-actcaaaaattgtattg 213  Q
    ||||||||||||||||||||||||||  |||||||||  ||| |||||||||||||||||    
49855912 gttcatttttcttcataatacaaaataattctcatttagaggaactcaaaaattgtattg 49855853  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 246
Target Start/End: Complemental strand, 1133029 - 1132937
Alignment:
155 gttcatttttcttcataatacaaaatttttctcattttaagga-ctcaaaaattgtattggagaaaatttttcgaggatttatatgaattctt 246  Q
    ||||||||| ||||||||||||||| | | ||||||||  ||| ||||||||||||||||||| |   |||| |||| |||| ||||||||||    
1133029 gttcattttacttcataatacaaaactctcctcattttggggaactcaaaaattgtattggaggagggttttggagggtttacatgaattctt 1132937  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 155 - 216
Target Start/End: Complemental strand, 15499403 - 15499341
Alignment:
155 gttcatttttcttcataatacaaaatttttctcattt-taaggactcaaaaattgtattggag 216  Q
    ||||| |||||||||||||||||||| || |||||||   || ||||||||||||||||||||    
15499403 gttcacttttcttcataatacaaaatcttcctcatttgggagaactcaaaaattgtattggag 15499341  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 156 - 249
Target Start/End: Complemental strand, 24588386 - 24588292
Alignment:
156 ttcatttttcttcataatacaaaatttttctcattttaagg-actcaaaaattgtattggagaaaatttttcgaggatttatatgaattcttcaa 249  Q
    |||||||||||||||||||||||||    |||||||  ||| |||||||||||||||||| | |   |||| |||| |||| |||||||||||||    
24588386 ttcatttttcttcataatacaaaatccccctcatttggaggaactcaaaaattgtattgggggatggttttggagggtttaaatgaattcttcaa 24588292  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 213
Target Start/End: Original strand, 7302064 - 7302120
Alignment:
156 ttcatttttcttcataatacaaaatttttctcattttaaggactcaaaaattgtattg 213  Q
    |||||||||||||||| ||||||||  |||||| ||| || |||||||||||||||||    
7302064 ttcatttttcttcatagtacaaaatccttctca-tttgagaactcaaaaattgtattg 7302120  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 216
Target Start/End: Original strand, 13638400 - 13638461
Alignment:
156 ttcatttttcttcataatacaaaatttttctcattttaagg-actcaaaaattgtattggag 216  Q
    |||||||||||| ||||||||||||| | ||||||||  || ||||||||||||| ||||||    
13638400 ttcatttttcttgataatacaaaattatcctcatttttgggaactcaaaaattgtgttggag 13638461  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 249
Target Start/End: Complemental strand, 50535159 - 50535110
Alignment:
201 aaaaattgtattggagaaa-atttttcgaggatttatatgaattcttcaa 249  Q
    ||||||||||||||||||  |||||| |||| ||||||||||||||||||    
50535159 aaaaattgtattggagaaggatttttggagggtttatatgaattcttcaa 50535110  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 249
Target Start/End: Complemental strand, 24924683 - 24924589
Alignment:
155 gttcatttttcttcataatacaaaatttttctcattttaaggactcaaaaattgtattggagaaaatttttcgaggatttatatgaattcttcaa 249  Q
    |||||||||||||||||||||||||   | ||||||| | | |||  ||||||||||| ||| ||| |||| || | ||||||||||||||||||    
24924683 gttcatttttcttcataatacaaaaccctcctcatttgaggaacttgaaaattgtatttgaggaaagttttggatggtttatatgaattcttcaa 24924589  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 222 - 256
Target Start/End: Complemental strand, 38233762 - 38233728
Alignment:
222 ttttcgaggatttatatgaattcttcaatattatt 256  Q
    ||||||||||||||||||||||||||||| |||||    
38233762 ttttcgaggatttatatgaattcttcaattttatt 38233728  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 154 - 216
Target Start/End: Complemental strand, 42267111 - 42267049
Alignment:
154 agttcatttttcttcataatacaaaatttttctcattttaaggactcaaaaattgtattggag 216  Q
    |||| ||||||||||||||||||||| | || ||||||  || | ||||||||||||||||||    
42267111 agttaatttttcttcataatacaaaactcttatcatttggagaattcaaaaattgtattggag 42267049  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 197 - 249
Target Start/End: Complemental strand, 32429991 - 32429940
Alignment:
197 actcaaaaattgtattggagaaaatttttcgaggatttatatgaattcttcaa 249  Q
    ||||||||| ||||||||||| | ||||| |||| ||||||||||||||||||    
32429991 actcaaaaaatgtattggagagagttttt-gagggtttatatgaattcttcaa 32429940  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 216
Target Start/End: Original strand, 6491161 - 6491223
Alignment:
155 gttcatttttcttcataatacaaaatttttctcattttaagg-actcaaaaattgtattggag 216  Q
    |||||||||||||||||||||||||| || |||||||   || ||||||||||||||||||||    
6491161 gttcatttttcttcataatacaaaatcttcctcatttgggggaactcaaaaattgtattggag 6491223  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 155 - 249
Target Start/End: Original strand, 9096296 - 9096391
Alignment:
155 gttcatttttcttcataatacaaaatttttctcattttaagga-ctcaaaaattgtattggagaaaatttttcgaggatttatatgaattcttcaa 249  Q
    ||||| |||||||||||||||||||| || || ||||   ||| ||||| ||||||||||||| |   |||| |||| ||||||||||||||||||    
9096296 gttcacttttcttcataatacaaaatcttcctaatttgggggaactcaacaattgtattggaggaggattttggagggtttatatgaattcttcaa 9096391  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 155 - 249
Target Start/End: Complemental strand, 19389921 - 19389827
Alignment:
155 gttcatttttcttcataatacaaaatttttctcattttaaggactcaaaaattgtattggagaaaatttttcgaggatttatatgaattcttcaa 249  Q
    |||||||| |||||||||||||||||  | |||||||   | ||| |||||||||||||||| |   |||| |||| |||| |||||||||||||    
19389921 gttcatttatcttcataatacaaaatcctcctcatttggggaactaaaaaattgtattggaggaggattttggagggtttacatgaattcttcaa 19389827  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 191
Target Start/End: Original strand, 5836864 - 5836901
Alignment:
154 agttcatttttcttcataatacaaaatttttctcattt 191  Q
    |||||||||||||||||||||||||| | |||||||||    
5836864 agttcatttttcttcataatacaaaactcttctcattt 5836901  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 192
Target Start/End: Complemental strand, 6491427 - 6491390
Alignment:
155 gttcatttttcttcataatacaaaatttttctcatttt 192  Q
    |||||||||||||||||||||||||| || ||||||||    
6491427 gttcatttttcttcataatacaaaatcttcctcatttt 6491390  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 162 - 218
Target Start/End: Original strand, 18671017 - 18671073
Alignment:
162 tttcttcataatacaaaatttttctcattttaaggactcaaaaattgtattggagaa 218  Q
    |||||||||||||| |||| ||| |||||| | | ||| ||||||||||||||||||    
18671017 tttcttcataatactaaatctttttcatttgaggaactaaaaaattgtattggagaa 18671073  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 249
Target Start/End: Complemental strand, 42777387 - 42777299
Alignment:
160 tttttcttcataatacaaaatttttctcattttaaggactcaaaaattgtattggagaaaatttttcgaggatttatatgaattcttcaa 249  Q
    ||||| ||||||||||||||| ||  ||||||||   |||||||||||||||||||| || ||||   ||| |||| |||||||||||||    
42777387 ttttttttcataatacaaaatcttcatcattttagaaactcaaaaattgtattggaggaagttttgaaagg-tttacatgaattcttcaa 42777299  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 155 - 191
Target Start/End: Original strand, 53013583 - 53013619
Alignment:
155 gttcatttttcttcataatacaaaatttttctcattt 191  Q
    |||||||||||||||||||||||||| || |||||||    
53013583 gttcatttttcttcataatacaaaatcttcctcattt 53013619  T

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Target: scaffold0007 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 159 - 250
Target Start/End: Complemental strand, 69038 - 68947
Alignment:
159 atttttcttcataatacaaaatttttctcattttaaggactcaaaaattgtattgga-gaaaatttttcgaggatttatatgaattcttcaat 250  Q
    ||||||||| |||||||||||| ||||  |||||| | || ||||||||||||| || || | ||||| |||| |||| ||||||||||||||    
69038 atttttctttataatacaaaatctttcaaattttaggaacacaaaaattgtattagaggagagtttttggagg-tttacatgaattcttcaat 68947  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 249 - 313
Target Start/End: Complemental strand, 8439353 - 8439289
Alignment:
249 atattatttataaatattaaattatcattctcttaaaaataatctttcatacaatataaaagatt 313  Q
    |||||| | ||||| ||||| |||||||||||| ||||||| | ||||| | |||||||||||||    
8439353 atattaatcataaacattaatttatcattctctaaaaaatactttttcaaaaaatataaaagatt 8439289  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 197 - 249
Target Start/End: Original strand, 26713883 - 26713935
Alignment:
197 actcaaaaattgtattggagaaaatttttcgaggatttatatgaattcttcaa 249  Q
    |||||||||||||||||||| |   |||| |||| ||||||||||||||||||    
26713883 actcaaaaattgtattggaggagggttttggagggtttatatgaattcttcaa 26713935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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