View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2859-Insertion-10 (Length: 536)
Name: NF2859-Insertion-10
Description: NF2859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2859-Insertion-10 |
 | |
|
| [»] scaffold0199 (1 HSPs) |
| | |
|
| [»] scaffold0983 (1 HSPs) |
| | |
|
| [»] scaffold0184 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 435; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 13 - 528
Target Start/End: Complemental strand, 33226703 - 33226190
Alignment:
| Q |
13 |
gttaatttcaatttcttctgaaggtgtttaaacttcattcagaaatagtggtgagattgatatatacgatggnnnnnnngaaagatgaataattgaaaat |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
33226703 |
gttaatttcaatttcttctgaaggtgtttaaacttcattcagaaatagtggcaagattgatatatacgatggaaagaaagaaagatgaataattgaaaat |
33226604 |
T |
|
| Q |
113 |
cggtgctcgtgttcaactataatttatgtggactttcttttttcgattcagctttgaattaaagttggataatttgctattaaaattggttgcaattcaa |
212 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33226603 |
cggtgctcgtgttcaactataatttatctggactttcttttttcgattcagctttgaattaaagttggataatttgctattaaaattggttgcaattcaa |
33226504 |
T |
|
| Q |
213 |
ttgtgttatgcatagatgaaacaggagttgtaattgtatttggtgtgcataaagcagcaagagatgatggaggggtgtgtgtgattaacgttacggtggc |
312 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |
|
|
| T |
33226503 |
ttgtgttatgcatagatgaaacag-agttgtaattgtatttggtgtgcataaagcagcaagagat-atggaggtgtgtgtgtgattaacgttacggtggc |
33226406 |
T |
|
| Q |
313 |
tgcatatgagttgggcacgagtactgaagtagagtgattgtgggcatcataaaatagagactcttaaataccaatttgttatatgttaagcaaatgtata |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
33226405 |
tgcatatgagttgggcacgagtactgaagtagagtgattgtgggcatcataaaatagagactcttaaataccaatttgttgtatgttaagcaaatgtata |
33226306 |
T |
|
| Q |
413 |
aataaatatgaaaatccattttaataacttgtccatccaaaagcaattttgattcaaactatctagacaacatattttatataaattatttttgttgtga |
512 |
Q |
| |
|
||||||| |||||| |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
33226305 |
aataaatgtgaaaaaccattttaataatttgtccattcaaaagcaattttgattcaaactatctagacaacatattttatataaattacttttgttgtga |
33226206 |
T |
|
| Q |
513 |
aagtatccaaacataa |
528 |
Q |
| |
|
|| ||||||||||||| |
|
|
| T |
33226205 |
aattatccaaacataa |
33226190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 260; Significance: 1e-144; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 13 - 528
Target Start/End: Complemental strand, 39001123 - 39000600
Alignment:
| Q |
13 |
gttaatttcaatttcttctgaaggtgtttaaacttcattcagaaatagtggtgagattgatatatacgatggnnnnnnngaaagatgaataattgaaaat |
112 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||| |||||||||||||| |||||| |
|
|
| T |
39001123 |
gttaatctcaatttcttctgaaggtgtttaaacttcattcagaaacagtggcatgattgatacatacgatggaaagaaagaaagatgaataatcgaaaat |
39001024 |
T |
|
| Q |
113 |
cggtgctcgtgttcaactataatttatgtggactttcttttttcgattcagctttgaattaaagttggataatttgctattaaaattggttgcaattcaa |
212 |
Q |
| |
|
||||||| ||| ||||||| ||||||| ||||| || |||| | ||| ||||||||||||||| |||||| ||||||||||||||||||||||||||||| |
|
|
| T |
39001023 |
cggtgctggtgctcaactaaaatttatctggacctttttttct-gatccagctttgaattaaaattggattatttgctattaaaattggttgcaattcaa |
39000925 |
T |
|
| Q |
213 |
ttgtgttatgcatagatgaaacaggagttgtaattgtatttggtgtgcataaagcagcaagagatgatggaggggtgtgtgtgattaacgttacggtggc |
312 |
Q |
| |
|
||||||| ||||||||||||||| ||||||||||||||| ||||||||||||| || |||||||||||||| || |||||||||||| ||||||||||| |
|
|
| T |
39000924 |
ttgtgttgtgcatagatgaaaca-gagttgtaattgtatgtggtgtgcataaaacatcaagagatgatgga--ggagtgtgtgattaatgttacggtggc |
39000828 |
T |
|
| Q |
313 |
tgcatatgagttgggcacgagtac--tgaagtaga-----------gtgattgtgggcatcataaaatagagactcttaaataccaatttgttatatgtt |
399 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||| ||||||| ||||| |||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
39000827 |
tgcatatgagtaaggcacgagtacattgaagtagagtgacagggaggtgattgcgggcaacataaaatagagactcttaaatgtcaatttgttatatgtt |
39000728 |
T |
|
| Q |
400 |
aagcaaatgtataaataaatatgaaaatccattttaataacttgtccatccaaaagcaattttgattcaaactatctagacaacatattttatataaatt |
499 |
Q |
| |
|
| ||||||| |||||||||| |||||| |||||||||||| |||||||||||||||||||| |||||||||||||| | || | ||||||||||||||| |
|
|
| T |
39000727 |
aggcaaatgaataaataaatgtgaaaacccattttaataatttgtccatccaaaagcaattatgattcaaactatccaaactaaatattttatataaatc |
39000628 |
T |
|
| Q |
500 |
atttttgttgtgaaagtatccaaacataa |
528 |
Q |
| |
|
| |||||||||||| |||||||||||||| |
|
|
| T |
39000627 |
a-ttttgttgtgaaggtatccaaacataa |
39000600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 449 - 528
Target Start/End: Original strand, 5025483 - 5025562
Alignment:
| Q |
449 |
ccaaaagcaattttgattcaaactatctagacaacatattttatataaattatttttgttgtgaaagtatccaaacataa |
528 |
Q |
| |
|
|||||| |||||||||||||||||||| | |||||||||||||||||||||| ||||||| | | |||||||||||||| |
|
|
| T |
5025483 |
ccaaaatcaattttgattcaaactatccaaacaacatattttatataaattacttttgttagggaggtatccaaacataa |
5025562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 191 - 275
Target Start/End: Original strand, 5025232 - 5025315
Alignment:
| Q |
191 |
attaaaattggttgcaattcaattgtgttatgcatagatgaaacaggagttgtaattgtatttggtgtgcataaagcagcaagag |
275 |
Q |
| |
|
||||||||||||||||||||||||||||| || ||| | |||||| ||| ||||| ||||| |||||| || ||||||||||||| |
|
|
| T |
5025232 |
attaaaattggttgcaattcaattgtgttgtgtataaaggaaaca-gagctgtaactgtatgtggtgtacacaaagcagcaagag |
5025315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 13 - 529
Target Start/End: Complemental strand, 31215951 - 31215423
Alignment:
| Q |
13 |
gttaatttcaatttcttctgaaggtgtttaaacttcattcagaaatagtggtgagattgatatatacgatggnnnnnnngaaagatgaa-taattgaaaa |
111 |
Q |
| |
|
|||||||| ||||||| |||||||||||||||||||||| | ||| | ||| |||||||||||||||||||| |||||||||| |||| ||||| |
|
|
| T |
31215951 |
gttaattttaatttctcctgaaggtgtttaaacttcattaaaaaacaatggcgagattgatatatacgatggaaagaaagaaagatgaaataatagaaaa |
31215852 |
T |
|
| Q |
112 |
tcggtgctcgtgttcaactataatttatgtggactttcttttttcgattcagctttgaattaaagttggat-----aatttgctattaaaattggttgca |
206 |
Q |
| |
|
|||||| | ||| ||||||||||||||| |||||||||||||| | ||||| |||||||||||| |||||| |||||||||||||||||||||||| |
|
|
| T |
31215851 |
tcggtgttggtgctcaactataatttatctggactttctttttccaattcaactttgaattaaaattggattggataatttgctattaaaattggttgca |
31215752 |
T |
|
| Q |
207 |
attcaattgtgttatgcatagat---gaaacaggagttgtaattgtatttggtgtgcataaagcagcaagagatgatggaggggtgtgtgtgattaacgt |
303 |
Q |
| |
|
||||||||||||| |||||| || |||||| |||||||||||||| |||||||||||||| ||||||||||||| | ||||||||||| || |
|
|
| T |
31215751 |
attcaattgtgttgtgcataaataatgaaacaa-agttgtaattgtatgtggtgtgcataaagtagcaagagatgatag-------tgtgtgattaatgt |
31215660 |
T |
|
| Q |
304 |
tacggtggctgcatatgagttgggcacgagtactgaagtagagtga-----------ttgtgggcatcataaaatagagactcttaaataccaatttgtt |
392 |
Q |
| |
|
||| || |||||||||||| ||| |||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||| || |
|
|
| T |
31215659 |
taccgtatctgcatatgagtaacgcatgagtgctgaagtagagtgacaaggaggtgattgtgggcatcataaaatagagactcttaaatgtcaatttatt |
31215560 |
T |
|
| Q |
393 |
atatgttaagcaaatgtataaataaatatgaaaatccattttaataacttgtccatccaaaagcaattttgattcaaactatctagacaacatattttat |
492 |
Q |
| |
|
||||||||| ||||||||||||||||| ||||| |||||||| ||| || |||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
31215559 |
atatgttaatcaaatgtataaataaatttgaaaccccattttagtaatttttccatccaaaagcaattttgattcaaactatccgaacaacatattttat |
31215460 |
T |
|
| Q |
493 |
ataaattatttttgttgtgaaagtatccaaacataat |
529 |
Q |
| |
|
|||||| | |||||||||||| ||||||||||||||| |
|
|
| T |
31215459 |
ataaatcacttttgttgtgaaggtatccaaacataat |
31215423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 108; Significance: 5e-54; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 264 - 513
Target Start/End: Complemental strand, 16116963 - 16116710
Alignment:
| Q |
264 |
aagcagcaagagatgatggaggggtgtgtgtgattaacgttacggtggctgcatatgagttgggcacgagtactg-------aagtagagtgattgtggg |
356 |
Q |
| |
|
|||||||||||||||||||||| | ||||| ||||| ||| |||||||||||||||||| |||||||||| || ||| || ||||||||||| |
|
|
| T |
16116963 |
aagcagcaagagatgatggaggagagtgtg--attaatgttgcggtggctgcatatgagtaaggcacgagtattggagcgacaaggag-gtgattgtggg |
16116867 |
T |
|
| Q |
357 |
catcataaaatagagactcttaaataccaatttgttatatgttaagcaaatgtataaataaatatgaaaatccattttaataacttgtccatccaaaagc |
456 |
Q |
| |
|
||||||||||||||||||||| | | |||||||||||||||||||||||||||| ||||||| |||||| |||||||| ||| ||| || ||||||| |
|
|
| T |
16116866 |
catcataaaatagagactcttcattgtcaatttgttatatgttaagcaaatgtatgaataaatgtgaaaacccattttagtaatttgcccgctcaaaagc |
16116767 |
T |
|
| Q |
457 |
aattttgattcaaactatctagacaacatattttatataaattatttttgttgtgaa |
513 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||| | | |||||||||||| |
|
|
| T |
16116766 |
aattttgattcaaactatctgtacaacatattttatataagtcacttttgttgtgaa |
16116710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 6e-20; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 370 - 508
Target Start/End: Original strand, 53078248 - 53078386
Alignment:
| Q |
370 |
agactcttaaataccaatttgttatatgttaagcaaatgtataaataaatatgaaaatccattttaataacttgtccatccaaaagcaattttgattcaa |
469 |
Q |
| |
|
|||||||| ||| |||||||| |||||||||| |||| || |||||||| | | |||||||||| ||| || ||||||||| |||||||||||||| |
|
|
| T |
53078248 |
agactcttcaatgtcaatttgtaatatgttaagaaaatctacaaataaatgttgagatccattttagtaatttacacatccaaaatcaattttgattcaa |
53078347 |
T |
|
| Q |
470 |
actatctagacaacatattttatataaattatttttgtt |
508 |
Q |
| |
|
||| || | |||||||||||||||||||| | ||||||| |
|
|
| T |
53078348 |
actgtccaaacaacatattttatataaatcacttttgtt |
53078386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 449 - 525
Target Start/End: Original strand, 52736733 - 52736809
Alignment:
| Q |
449 |
ccaaaagcaattttgattcaaactatctagacaacatattttatataaattatttttgttgtgaaagtatccaaaca |
525 |
Q |
| |
|
|||||||||||||||| |||| |||||| ||||||||||| ||| |||| | |||| |||| |||||||||||||| |
|
|
| T |
52736733 |
ccaaaagcaattttgacacaaaatatctaaacaacatatttcatacaaatcacttttattgtaaaagtatccaaaca |
52736809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 449 - 528
Target Start/End: Original strand, 25181179 - 25181258
Alignment:
| Q |
449 |
ccaaaagcaattttgattcaaactatctagacaacatattttatataaattatttttgttgtgaaagtatccaaacataa |
528 |
Q |
| |
|
|||||| ||||||||| |||| |||| | ||||||||||||| | |||| | |||||| ||||| |||||||||||||| |
|
|
| T |
25181179 |
ccaaaatcaattttgacacaaaatatccaaacaacatattttaaacaaatcacttttgtggtgaaggtatccaaacataa |
25181258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 9e-19; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 371 - 507
Target Start/End: Complemental strand, 41892029 - 41891893
Alignment:
| Q |
371 |
gactcttaaataccaatttgttatatgttaagcaaatgtataaataaatatgaaaatccattttaataacttgtccatccaaaagcaattttgattcaaa |
470 |
Q |
| |
|
||||||| ||| |||||||| |||||||||| |||| || |||||||| | | | |||||||| ||| || ||||||||| ||||||||||||||| |
|
|
| T |
41892029 |
gactcttcaatgtcaatttgtaatatgttaagaaaatctacaaataaatgttgagacccattttagtaatttacacatccaaaatcaattttgattcaaa |
41891930 |
T |
|
| Q |
471 |
ctatctagacaacatattttatataaattatttttgt |
507 |
Q |
| |
|
|| || | |||||||||||||||||||| |||||||| |
|
|
| T |
41891929 |
ctgtccaaacaacatattttatataaatcatttttgt |
41891893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 180 - 323
Target Start/End: Original strand, 41407888 - 41408027
Alignment:
| Q |
180 |
gataatttgctattaaaattggttgcaattcaattgtgttatgcatagatgaaacaggagttgtaattgtatttggtgtgcataaagcagcaagagatga |
279 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| |||||| || ||| | |||||| ||| ||||| ||||| |||||| || ||||||||||||| || |
|
|
| T |
41407888 |
gataatctgctattaaaattggttgcaattcaa-tgtgttgtgtataaaggaaaca-gagctgtaactgtatgtggtgtacacaaagcagcaagagggga |
41407985 |
T |
|
| Q |
280 |
tggaggggtgtgtgtgattaacgttacggtggctgcatatgagt |
323 |
Q |
| |
|
|| | || |||||| |||| | | |||||||||||||||||| |
|
|
| T |
41407986 |
tg--gtggattgtgtggttaatgatgcggtggctgcatatgagt |
41408027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 451 - 508
Target Start/End: Original strand, 41408169 - 41408226
Alignment:
| Q |
451 |
aaaagcaattttgattcaaactatctagacaacatattttatataaattatttttgtt |
508 |
Q |
| |
|
|||| ||||||||||| ||||||| | |||||||||||||||||||| | ||||||| |
|
|
| T |
41408169 |
aaaatcaattttgatttaaactattcaaacaacatattttatataaatcacttttgtt |
41408226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0199 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0199
Description:
Target: scaffold0199; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 486 - 528
Target Start/End: Complemental strand, 16858 - 16816
Alignment:
| Q |
486 |
attttatataaattatttttgttgtgaaagtatccaaacataa |
528 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| |||||||| |
|
|
| T |
16858 |
attttgtataaattatttttgttgtgaaagtatcaaaacataa |
16816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 446 - 528
Target Start/End: Original strand, 23377479 - 23377561
Alignment:
| Q |
446 |
catccaaaagcaattttgattcaaactatctagacaacatattttatataaattatttttgttgtgaaagtatccaaacataa |
528 |
Q |
| |
|
|||| |||||||||| ||||||||| ||| | ||||||| ||||||| ||| | ||||||| |||| |||||||||||||| |
|
|
| T |
23377479 |
catctaaaagcaattctgattcaaaacatccaaacaacattttttatactaatcacttttgttttgaaggtatccaaacataa |
23377561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 450 - 486
Target Start/End: Original strand, 3853879 - 3853915
Alignment:
| Q |
450 |
caaaagcaattttgattcaaactatctagacaacata |
486 |
Q |
| |
|
|||||||||||||||||||||||||| | |||||||| |
|
|
| T |
3853879 |
caaaagcaattttgattcaaactatccaaacaacata |
3853915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0983 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0983
Description:
Target: scaffold0983; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 447 - 483
Target Start/End: Complemental strand, 2402 - 2366
Alignment:
| Q |
447 |
atccaaaagcaattttgattcaaactatctagacaac |
483 |
Q |
| |
|
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|
|
| T |
2402 |
atccaaaatcaattttgattcaaactatctaaacaac |
2366 |
T |
|
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Target: scaffold0184 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0184
Description:
Target: scaffold0184; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 479 - 535
Target Start/End: Original strand, 6960 - 7015
Alignment:
| Q |
479 |
acaacatattttatataaattatttttgttgtgaaagtatccaaacataatttaatt |
535 |
Q |
| |
|
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|
|
| T |
6960 |
acaacatattttatacaaatcacttttgttttg-aagtatccaaacataaattaatt |
7015 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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