View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2859-Insertion-11 (Length: 504)

Name: NF2859-Insertion-11
Description: NF2859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2859-Insertion-11
NF2859-Insertion-11
[»] chr3 (55 HSPs)
chr3 (7-504)||(2476548-2477047)
chr3 (24-481)||(7324087-7324542)
chr3 (9-483)||(2635662-2636132)
chr3 (116-470)||(2644102-2644462)
chr3 (7-465)||(9565468-9565924)
chr3 (116-482)||(9561731-9562097)
chr3 (7-437)||(754248-754676)
chr3 (16-465)||(7442627-7443072)
chr3 (9-486)||(2631292-2631772)
chr3 (116-470)||(2492033-2492405)
chr3 (37-475)||(7333927-7334344)
chr3 (9-470)||(2658787-2659252)
chr3 (116-259)||(2502364-2502507)
chr3 (347-475)||(9594601-9594729)
chr3 (14-104)||(767916-768005)
chr3 (9-172)||(7318553-7318715)
chr3 (11-259)||(9594250-9594495)
chr3 (164-475)||(768120-768434)
chr3 (347-481)||(7942425-7942559)
chr3 (204-259)||(666992-667047)
chr3 (367-434)||(13498211-13498278)
chr3 (302-400)||(746315-746413)
chr3 (359-429)||(37753334-37753404)
chr3 (366-463)||(2502106-2502203)
chr3 (369-437)||(43991944-43992012)
chr3 (368-435)||(2456235-2456302)
chr3 (38-104)||(666829-666894)
chr3 (367-481)||(7430533-7430647)
chr3 (367-437)||(14888609-14888679)
chr3 (367-436)||(9587182-9587251)
chr3 (370-422)||(2442038-2442090)
chr3 (353-421)||(4142117-4142185)
chr3 (368-435)||(771497-771564)
chr3 (370-421)||(803218-803269)
chr3 (370-421)||(2678399-2678450)
chr3 (370-421)||(2696732-2696783)
chr3 (370-421)||(3754600-3754651)
chr3 (370-421)||(4157944-4157995)
chr3 (202-257)||(43992127-43992182)
chr3 (347-421)||(989396-989470)
chr3 (368-437)||(1437980-1438048)
chr3 (370-419)||(2459277-2459326)
chr3 (202-259)||(7942650-7942707)
chr3 (353-433)||(783782-783862)
chr3 (369-421)||(1891063-1891115)
chr3 (367-435)||(9608341-9608409)
chr3 (405-464)||(747179-747238)
chr3 (339-437)||(37757705-37757803)
chr3 (202-259)||(771325-771382)
chr3 (202-259)||(2456414-2456471)
chr3 (206-259)||(9587018-9587071)
chr3 (7-45)||(7442588-7442626)
chr3 (150-178)||(9586959-9586987)
chr3 (116-179)||(9608074-9608138)
chr3 (203-259)||(12218192-12218248)
[»] chr2 (7 HSPs)
chr2 (202-466)||(33020268-33020535)
chr2 (339-466)||(33038115-33038242)
chr2 (368-434)||(33026644-33026710)
chr2 (353-431)||(34560900-34560978)
chr2 (370-421)||(36577366-36577417)
chr2 (202-259)||(33026825-33026882)
chr2 (202-259)||(33038357-33038414)
[»] chr4 (3 HSPs)
chr4 (147-259)||(41456255-41456367)
chr4 (347-417)||(20016162-20016232)
chr4 (347-421)||(20019749-20019823)
[»] scaffold0044 (2 HSPs)
scaffold0044 (347-482)||(89082-89217)
scaffold0044 (151-256)||(89311-89416)
[»] chr5 (13 HSPs)
chr5 (367-475)||(20292941-20293049)
chr5 (370-421)||(23766862-23766913)
chr5 (370-421)||(23816710-23816761)
chr5 (367-475)||(20301389-20301497)
chr5 (367-475)||(20305802-20305910)
chr5 (367-475)||(20310206-20310314)
chr5 (370-421)||(11081813-11081864)
chr5 (116-183)||(20301675-20301743)
chr5 (116-183)||(20306088-20306156)
chr5 (116-183)||(20310492-20310560)
chr5 (370-421)||(23769646-23769697)
chr5 (370-421)||(23819494-23819545)
chr5 (147-183)||(20293228-20293264)
[»] chr6 (4 HSPs)
chr6 (367-420)||(24417483-24417536)
chr6 (370-427)||(370785-370842)
chr6 (370-423)||(1459541-1459594)
chr6 (370-423)||(1470923-1470976)
[»] scaffold0097 (2 HSPs)
scaffold0097 (203-286)||(34138-34221)
scaffold0097 (116-156)||(34231-34271)
[»] chr1 (1 HSPs)
chr1 (370-417)||(51381455-51381502)
[»] chr7 (3 HSPs)
chr7 (202-259)||(39299142-39299198)
chr7 (370-422)||(1078160-1078212)
chr7 (347-431)||(39298967-39299051)
[»] scaffold0015 (1 HSPs)
scaffold0015 (371-427)||(32330-32386)


Alignment Details
Target: chr3 (Bit Score: 377; Significance: 0; HSPs: 55)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 7 - 504
Target Start/End: Complemental strand, 2477047 - 2476548
Alignment:
Q  7 ataaaagcaatgttcaacctatagatyccatcaaccattgattaacaatgatccaacaaagtcaccaagactcaatgcaggcataaaataaataacacca 106  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |||||||||||| |||||||||||||||||||||| |    
T  2477047 ataaaagcaatgttcaacctatagattccatcaaccattgattaacaatgatccaacaaa-taaccaagactcaaagcaggcataaaataaataacacaa 2476949  T
Q  107 cnnnnnnnnctaaccatatatatgttggagttgaatcccagcttaaggtgatatcaaactctcaatgtagacatttgagtatatcaggacatatttgttt 206  Q
    |        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  2476948 caaagaaaactaaccatatatatgttggagttgaatcccagcttaaggtgatatcaaactctcaatgtagacatttgagtatatcaggtcatatttgttt 2476849  T
Q  207 tgaaactcaggaatattcaaagtaccagttttggaatcgtaaacaaccaacttatcattgccactttcaatctcaataaactcaaccaacagttggtcat 306  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||| ||||||||||||||||    
T  2476848 tgaaactcaggaatattcgaagtaccagttttggaatcgtaaacaaccaacttatcattgtcactttcaatctcaagacactcgaccaacagttggtcat 2476749  T
Q  307 actcagaaatgtataaagcattgtagggttctaaaccccaatcttgcatgttaggaaccgtgtacaatttagtccaagactctttatttccatagtgttt 406  Q
     |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  2476748 cctcagaaatgtataaagcattgtaggcttctaaaccccgatcttgcatgttaggaacagtgtacaatttagtccaagactctttatttccatagtgttt 2476649  T
Q  407 cataatccaaacatccataaacatatcactagctgcagagacacacaagcaatccctcaacacatcc---aaggtccacgaatgatactcgtaatcaggt 503  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  ||||||   ||| ||||||||||| ||| ||||||||||    
T  2476648 cataatccaaacatccataaacatatcactagctgcagagatacacaagcaatccctcactacatccaagaagatccacgaatgacacttgtaatcaggt 2476549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 24 - 481
Target Start/End: Original strand, 7324087 - 7324542
Alignment:
Q  24 cctatagatyccatcaaccatt-gattaacaatgatccaacaaagtcaccaagactcaatgcaggcataaaataaataacaccacnnnnnnnnctaacca 122  Q
    ||||||||| |||||||||||| |||||||||||||||||||| |||| ||| | |||  |||||| ||||| ||| ||||| |         |||||||    
T  7324087 cctatagattccatcaaccattagattaacaatgatccaacaa-gtcaacaaaaatcagagcaggcgtaaaacaaacaacacaa--acaaaaactaacca 7324183  T
Q  123 tatatatgttggagttgaatcccagcttaaggtgatatcaaactctcaatgtagacatttgagtatatcaggacatatttgttttgaaactcaggaatat 222  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |  |||| ||||||||||||||||||||||    
T  7324184 tatatatgttgcagttgaatcccagcttaaggtgatatcaaactctcaatgtagacatttgggcatatccgttcatagttgttttgaaactcaggaatat 7324283  T
Q  223 tcaaagtaccagttttggaatcgtaaacaaccaacttatcattgccactttcaatctcaataaactcaaccaacagttggtcatactcagaaatgtataa 322  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | || ||||| |||||||||| |||||||||||||||    
T  7324284 tcaaagtaccagttttggaatcgtaaagaaccaacttatcattgccactttcaatctcaatacaatcgaccaaaagttggtcatcctcagaaatgtataa 7324383  T
Q  323 agcattgtagggttctaaaccccaatcttgcatgttaggaaccgtgtacaatttagtccaagactctttatttccatagtgtttcataatccaaacatcc 422  Q
    ||||| ||||| ||||||||| | ||||||||||||||||||  | ||||||||||||||||||||||||||||| ||||  ||||||||||||||||||    
T  7324384 agcatcgtaggcttctaaaccgcgatcttgcatgttaggaacactatacaatttagtccaagactctttatttccgtagtccttcataatccaaacatcc 7324483  T
Q  423 ataaacatatcactagctgcagagacacacaagcaatccctcaacacatccaaggtcca 481  Q
    | | ||||||||| || | || ||| ||  | ||||||||||| ||||| |||| ||||    
T  7324484 aaagacatatcaccagttccaaagagaccaaggcaatccctcaccacatgcaagatcca 7324542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 9 - 483
Target Start/End: Complemental strand, 2636132 - 2635662
Alignment:
Q  9 aaaagcaatgttcaacctatagatyccatcaaccattgattaacaatgatccaacaaagtcaccaagactcaatgcaggcataaaa--taaataacacca 106  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||| |||    |||||||| |  ||||||||||      
T  2636132 aaaagcaatgttcaacctatagattccatcaaccattgattaacaatgatctaacaa-gtcaccaagaatcagattaggcataatacataaataacaca- 2636035  T
Q  107 cnnnnnnnnctaaccatatatatgttggagttgaatcccagcttaaggtgatatcaaactctcaatgtagacatttgagtatatcaggacatatttgttt 206  Q
             |||||||||||||||||| || ||||||||| |||||||||||||||||||| ||||||||||||||| ||||||| |  |||| ||||||    
T  2636034 -gacaaaaactaaccatatatatgttgcagatgaatcccaacttaaggtgatatcaaactcgcaatgtagacatttgggtatatctgttcatagttgttt 2635936  T
Q  207 tgaaactcaggaatattcaaagtaccagttttggaatcgtaaacaaccaacttatcattgccactttcaatctcaataaactcaaccaacagttggtcat 306  Q
    |||||||| |||||||| ||||||||| |||||||||||||||||||||||||   ||  |||||||||||||||  | |||  |  |  ||||||||||    
T  2635935 tgaaactcgggaatatttaaagtaccatttttggaatcgtaaacaaccaacttcatatctccactttcaatctcataacactgcaggagtagttggtcat 2635836  T
Q  307 actcagaaatgtataaagcattgtagggttctaaaccccaatcttgcatgttaggaaccgtgtacaatttagtccaagactctttatttccatagtgttt 406  Q
     ||||||||| |||||||| || |||  ||||||||||| || |||||||||||||||  |||||||||||||||||||||||| | |||||||    |     
T  2635835 cctcagaaatatataaagctttatagacttctaaaccccgatgttgcatgttaggaacactgtacaatttagtccaagactcttcacttccata---ctc 2635739  T
Q  407 cataatccaaacatccataaacatatcactagctgcagagacacacaagcaatccctcaacacatccaaggtccacg 483  Q
    ||||||||||||||||| ||||| |||||||| |||| ||||||||| ||||| ||||| |||||||||| ||||||    
T  2635738 cataatccaaacatccaaaaacacatcactagttgcaaagacacacatgcaattcctcatcacatccaagatccacg 2635662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 116 - 470
Target Start/End: Original strand, 2644102 - 2644462
Alignment:
Q  116 ctaaccatatatatgttggagttgaatcccagcttaaggtgatatcaaactctcaatgtagacatttgagtatatcaggacatatttgttttgaaactca 215  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  2644102 ctaaccatatatatgttgcagttgaatcccagcttaaggtgatatcaaactctcaatgtagacatttgagtatatcaggtcatatttgttttgaaactca 2644201  T
Q  216 ggaatattcaaagtaccagttttggaatcgtaaacaaccaacttatcattgccactttcaatctcaat------aaactcaaccaacagttggtcatact 309  Q
    ||||||||||| || |||||||||||||| ||||||||||||||   || |||| |||||  ||||||      | |||| |||||||||||||||| ||    
T  2644202 ggaatattcaatgtgccagttttggaatcataaacaaccaacttgatatagccagtttcaccctcaatttcacaacactccaccaacagttggtcatcct 2644301  T
Q  310 cagaaatgtataaagcattgtagggttctaaaccccaatcttgcatgttaggaaccgtgtacaatttagtccaagactctttatttccatagtgtttcat 409  Q
    | ||||| ||||||||  |   || ||  |||  |  |||||||| ||||||||  ||||||||||||||||||||||||| ||||||||| |  |||||    
T  2644302 ctgaaatatataaagctctactggctttcaaattctgatcttgcaggttaggaatagtgtacaatttagtccaagactcttgatttccatactccttcat 2644401  T
Q  410 aatccaaacatccataaacatatcactagctgcagagacacacaagcaatccctcaacaca 470  Q
    |||||||||||||| | |   |||||||| |||| ||||||||||||||||||||||||||    
T  2644402 aatccaaacatccaaatattcatcactagttgcaaagacacacaagcaatccctcaacaca 2644462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 7 - 465
Target Start/End: Original strand, 9565468 - 9565924
Alignment:
Q  7 ataaaagcaatgttcaacctatagatyccatcaaccattgattaacaatgatccaacaaagtcaccaagactcaatgcaggcataaaataaataacacca 106  Q
    ||||||||||||| |||||||||||| || |||||||||||||| ||||||||||||||| ||||||||| ||||  ||| ||||||||||||||||| |    
T  9565468 ataaaagcaatgtccaacctatagattccctcaaccattgattagcaatgatccaacaaa-tcaccaagaatcaaatcagacataaaataaataacac-a 9565565  T
Q  107 cnnnnnnnnctaaccatatatatgttggagttgaatcccagcttaaggtgatatcaaactctcaatgtagacatttgagtatatcaggacatatttgttt 206  Q
             ||||||||||  |||||| | ||||||||  || ||||||||||||||||||||||||||||||||||||  || | |   ||| ||||||    
T  9565566 gtaaaaaaactaaccatatcaatgttgcatttgaatccgtgcctaaggtgatatcaaactctcaatgtagacatttgaggctacctgtttatagttgttt 9565665  T
Q  207 tgaaactcaggaatattcaaagtaccagttttggaatcgtaaacaaccaacttatcattgccacttt-caatctcaataaactcaaccaacagttggtca 305  Q
    |||||||||||||||||||||||||| || |||||||| ||||||||||||||   | ||  ||||| |||| ||  ||||||| |||||||||||||||    
T  9565666 tgaaactcaggaatattcaaagtaccggtcttggaatcataaacaaccaacttgatactgttactttgcaatttct-taaactctaccaacagttggtca 9565764  T
Q  306 tactcagaaatgtataaagcattgtagggttctaaaccccaatcttgcatgttaggaaccgtgtacaatttagtccaagactctttatttccatagtgtt 405  Q
    |  |||||||| |||||||| || |||| ||  | ||||  |||||| |||||||||||  |||||||||||||||||||||||| || ||| || |  |    
T  9565765 tcgtcagaaatatataaagctttataggctttgacaccctgatcttgtatgttaggaacaatgtacaatttagtccaagactcttgatctccgtactcct 9565864  T
Q  406 tcataatccaaacatccataaacatatcactagctgcagagacacacaagcaatccctca 465  Q
    |||||||||||||||||||| |||||||||||  |||| |||||||||||||| ||||||    
T  9565865 tcataatccaaacatccatatacatatcactacttgcaaagacacacaagcaacccctca 9565924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 116 - 482
Target Start/End: Original strand, 9561731 - 9562097
Alignment:
Q  116 ctaaccatatatatgttggagttgaatcccagcttaaggtgatatcaaactctcaatgtagacatttgagtatatcaggacatatttgttttgaaactca 215  Q
    |||||||||||||||||| |||||||||   ||||||||||||||||||||||||||||||| ||||  | ||||| |  |||| |||||||||||||||    
T  9561731 ctaaccatatatatgttgcagttgaatcaatgcttaaggtgatatcaaactctcaatgtagaaattttggcatatctgatcatagttgttttgaaactca 9561830  T
Q  216 ggaatattcaaagtaccagttttggaatcgtaaacaaccaacttatcattgccactttcaatctcaataaactcaaccaacagttggtcatactcagaaa 315  Q
    |||||||||||||||||||| || ||||||||||||||||||||  | ||| |||||   |||||| ||||||| | || ||||||||||| |||||||     
T  9561831 ggaatattcaaagtaccagtcttagaatcgtaaacaaccaacttcactttgtcacttcgcatctcattaaactctagcagcagttggtcatcctcagaac 9561930  T
Q  316 tgtataaagcattgtagggttctaaaccccaatcttgcatgttaggaaccgtgtacaatttagtccaagactctttatttccatagtgtttcataatcca 415  Q
    | |||||| || | || | |||||||||   ||||||||||||||||||  |||| ||||||||||||||||||| ||||||||| |  |||||||||||    
T  9561931 tatataaaacagtataagcttctaaaccgtgatcttgcatgttaggaacactgtataatttagtccaagactcttgatttccatactcattcataatcca 9562030  T
Q  416 aacatccataaacatatcactagctgcagagacacacaagcaatccctcaacacatccaaggtccac 482  Q
    |||||||| ||||| || |||||  ||  ||| ||||||||||| ||| | |||| ||||| |||||    
T  9562031 aacatccaaaaacaaattactagtagctaagatacacaagcaattccttagcacacccaagatccac 9562097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 7 - 437
Target Start/End: Original strand, 754248 - 754676
Alignment:
Q  7 ataaaagcaatgttcaacctatagatyccatcaaccattgattaacaatgatccaacaaagtcaccaagactcaatgcaggcataaaataaataacacca 106  Q
    ||||||| ||||| |||||||||||| || |||||||||||||| ||||||||||||||| ||||||||| ||||  ||| ||||||||||||||||| |    
T  754248 ataaaagtaatgtccaacctatagattccctcaaccattgattagcaatgatccaacaaa-tcaccaagaatcaaatcagacataaaataaataacacaa 754346  T
Q  107 cnnnnnnnnctaaccatatatatgttggagttgaatcccagcttaaggtgatatcaaactctcaatgtagacatttgagtatatcaggacatatttgttt 206  Q
             |||||||| ||||||||| ||||||||||  |||||||||||||||||||||||||||||||||| ||||  |||  |  |||| ||||||    
T  754347 -tacaaaaactaaccatgtatatgttgcagttgaatccttgcttaaggtgatatcaaactctcaatgtagacatctgagcctatttgttcatagttgttt 754445  T
Q  207 tgaaactcaggaatattcaaagtaccagttttggaatcgtaaacaaccaacttatcattgccactttcaatctcaataaactcaaccaacagttggtcat 306  Q
    ||||||||||||||||||| ||||||||| |||||||| ||||||||||||||   ||| |||| ||| ||  ||  ||||   | || |||||||||||    
T  754446 tgaaactcaggaatattcagagtaccagtcttggaatcataaacaaccaacttgatatttccaccttccattgcataaaaccttagcagcagttggtcat 754545  T
Q  307 actcagaaatgtataaagcattgtagggttctaaaccccaatcttgcatgttaggaaccgtgtacaatttagtccaagactctttatttccatagtgttt 406  Q
     |||| |||| |||||||  |   ||||||  | |||   |||||| ||||  |||||  |||||||||||||||||||||||| || |||||| |  ||    
T  754546 cctcataaatatataaaggttgaaagggtttgagaccatgatcttgtatgtcgggaacaatgtacaatttagtccaagactcttgatctccatactcctt 754645  T
Q  407 cataatccaaacatccataaacatatcacta 437  Q
    |||||||||||||||||||||||||||||||    
T  754646 cataatccaaacatccataaacatatcacta 754676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 16 - 465
Target Start/End: Original strand, 7442627 - 7443072
Alignment:
Q  16 atgttcaacctatagatyccatcaaccattgattaacaatgatccaacaaagtcaccaagactcaatgcaggcataaaataaataacaccacnnnnnnnn 115  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| || | |||    | |  ||||||||||||||| |             
T  7442627 atgttcaacctatagattccatcaaccattgattaacaatgatccaacaa-gtcacaaaaaatcag---atgtgtaaaataaataacacaaataaaaaaa 7442722  T
Q  116 ctaaccatatatatgttggagttgaatcccagcttaaggtgatatcaaactctcaatgtagacatttgagtatatcaggacatatttgttttgaaactca 215  Q
    ||||||||||||||||||  |||||||||||||||| || |||||||||||||||||||||||||||||||||||| |  ||||  | |||| |||||||    
T  7442723 ctaaccatatatatgttgccgttgaatcccagcttagggcgatatcaaactctcaatgtagacatttgagtatatcggttcataggttttttcaaactca 7442822  T
Q  216 ggaatattcaaagtaccagttttggaatcgtaaacaaccaacttatcattgccactttcaatctcaataaactcaaccaacagttggtcatactcagaaa 315  Q
    ||||||||||||||||| || |||||||| |||||| |||||||   ||||| |||||  || |||| || | | | || ||||||||||| |||| | |    
T  7442823 ggaatattcaaagtacccgtcttggaatcataaacagccaactttgtattgctactttgcatatcaacaatccccaacagcagttggtcatcctcataga 7442922  T
Q  316 tgtataaagcattgtagggttctaaaccccaatcttgcatgttaggaaccgtgtacaatttagtccaagactctttatttccatagtgtttcataatcca 415  Q
    | ||| ||  | | |||| ||  |||| || || |||||| ||||||||  | ||||| |||||||||||||||| ||||||||| |  ||||| |||||    
T  7442923 tatatgaaatagtataggctttaaaacgccgatgttgcattttaggaacactatacaacttagtccaagactcttgatttccatactccttcatgatcca 7443022  T
Q  416 aacatccataaacatatcactagctgcagagacacacaagcaatccctca 465  Q
    |||||  | ||||| |||||||||| || |||||||||||||||||||||    
T  7443023 aacattaaaaaacaaatcactagcttcatagacacacaagcaatccctca 7443072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 9 - 486
Target Start/End: Complemental strand, 2631772 - 2631292
Alignment:
Q  9 aaaagcaatgttcaacctatagatyccatcaaccattgattaacaatgatccaacaaagtcaccaagactcaatgcaggcataaaataaa-----taaca 103  Q
    ||||||||| ||||||||| |||| |||||||||||||||||||||||||||||||| ||||| |||| |||| |||| |||||||||||     |||||    
T  2631772 aaaagcaattttcaacctacagattccatcaaccattgattaacaatgatccaacaa-gtcactaagaatcaaagcagacataaaataaaataaataaca 2631674  T
Q  104 ccacnnnnnnnnctaaccatatatatgttggagttgaatcccagcttaaggtgatatcaaactctcaatgtagacatttgagtatatcaggacatatttg 203  Q
      |         |||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||  | ||||  |  |||| |||    
T  2631673 taa-acataaaactaaccatgtatatgttgcagttgaatcccagcttaaggtgatattaaactctcaatgtagactttttgggatatatgttcatagttg 2631575  T
Q  204 ttttgaaactcaggaatattcaaagtaccagttttggaatcgtaaacaaccaacttatcattgccactttcaatctcaataaactcaaccaacagttggt 303  Q
    |||||||||||| ||||||| ||| ||||||||||||||||||| ||||||||||| || | |||||| |||| |||   | |||  |  | |||||| |    
T  2631574 ttttgaaactcaagaatattaaaaataccagttttggaatcgtagacaaccaacttctcctcgccactgtcaaactcgtaacactgcaagagcagttgat 2631475  T
Q  304 catactcagaaatgtataaagcattgtagggttctaaaccccaatcttgcatgttaggaaccgtgtacaatttagtccaagactctttatttccatagtg 403  Q
    ||| ||||||||| |||| |||     | | ||  |||||   ||| ||||||| ||||||  || ||||||||||||||||||||| ||||||||| |     
T  2631474 catcctcagaaatatatacagcggcagatgcttggaaaccgtgatcgtgcatgtcaggaacactgcacaatttagtccaagactcttgatttccatattc 2631375  T
Q  404 tttcataatccaaacatccataaacatatcactagctgcagagacacacaagcaatccctcaacacatccaaggtccacgaat 486  Q
     |||||||||||||||| || |||||||||||||| |||| ||||||||||| |||| |||| |||| |||| ||||| ||||    
T  2631374 cttcataatccaaacattcaaaaacatatcactagttgcaaagacacacaagtaatcactcagcacacccaatgtccaggaat 2631292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 116 - 470
Target Start/End: Complemental strand, 2492405 - 2492033
Alignment:
Q  116 ctaaccatatatatgttggagttgaatcccagcttaaggtgatatcaaactctcaatgtagacatttgagtatatcaggacatatttgttttgaaactca 215  Q
    |||||||||||||||  | ||||||||||||||||||||||||||||||||||||||||||||||||||||||  | |  |||| ||||||||||||||     
T  2492405 ctaaccatatatatgccgcagttgaatcccagcttaaggtgatatcaaactctcaatgtagacatttgagtattccggttcatagttgttttgaaactct 2492306  T
Q  216 ggaatattcaaagtaccagttttggaatcgtaaacaaccaacttatcattgccactttcaatctcaataaactcaaccaacagttggtcatactcagaaa 315  Q
    ||||||||||||||| |||| |||||||| ||||||||||||||   | ||| ||||| ||  | || |||| | |||| ||||||||||| ||||||||    
T  2492305 ggaatattcaaagtatcagtcttggaatcataaacaaccaacttcctaatgcgactttgaaaatgaaaaaaccccaccagcagttggtcatcctcagaaa 2492206  T
Q  316 tgtataaagcattgtagggt------------------tctaaaccccaatcttgcatgttaggaaccgtgtacaatttagtccaagactctttatttcc 397  Q
    | ||| || || | ||||||                  |||||||||| ||||||||||||||||||  | |||||||||||||||||||||  ||||||    
T  2492205 tatatgaaacagtatagggttcgagatcttcataggcgtctaaaccccgatcttgcatgttaggaacactatacaatttagtccaagactctcgatttcc 2492106  T
Q  398 atagtgtttcataatccaaacatccataaacatatcactagctgcagagacacacaagcaatccctcaacaca 470  Q
    ||| |  |||||||||||||||| || || | ||||| ||| |||| | ||||||||||||||||||| ||||    
T  2492105 atactccttcataatccaaacattcaaaatcctatcaatagttgcaaaaacacacaagcaatccctcagcaca 2492033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 37 - 475
Target Start/End: Original strand, 7333927 - 7334344
Alignment:
Q  37 tcaaccattgattaacaatgatccaacaaagtcaccaagactcaatgcaggcataaaataaataacaccacnnnnnnnnctaaccatatatatgttggag 136  Q
    ||||||||||||||||||||||| ||||| ||||  || | |||| ||||| |||||||||||||||| |         ||||||||||||||||||  |    
T  7333927 tcaaccattgattaacaatgatctaacaa-gtcatgaataatcaaagcagggataaaataaataacacaa--ataaaaactaaccatatatatgttgccg 7334023  T
Q  137 ttgaatcccagcttaaggtgatatcaaactctcaatgtagacatttgagtatatcaggacatatttgttttgaaactcaggaatattcaaagtaccagtt 236  Q
    ||||||||||||||| || ||||||||||||||||||||||||||||||| ||||||   ||| ||||||||||||||||| ||||| ||||||||||||    
T  7334024 ttgaatcccagcttagggcgatatcaaactctcaatgtagacatttgagtctatcagtttatagttgttttgaaactcagggatatttaaagtaccagtt 7334123  T
Q  237 ttggaatcgtaaacaaccaacttatcattgccactttcaatctcaataa-actcaaccaacagttggtcatactcagaaatgtataaagcattgtagggt 335  Q
    |||| ||| ||||||||||||   || ||                |||| |||| |||||||||||||||| ||| ||||| ||||||  |   | || |    
T  7334124 ttgggatcataaacaaccaac---tcgtt----------------ataacactccaccaacagttggtcatcctctgaaatatataaaagagaatcggct 7334204  T
Q  336 tctaaaccccaatcttgcatgttaggaaccgtgtacaatttagtccaagactctttatttccatagtgtttcataatccaaacatccataaacatatcac 435  Q
    |||||||| | ||||| || ||||||||  |||||||||||||||||||||||||||||||| ||||  ||||| ||||||||||||  | | |||||||    
T  7334205 tctaaaccacgatctttcaggttaggaatagtgtacaatttagtccaagactctttatttccgtagtccttcatgatccaaacatcccaatatatatcac 7334304  T
Q  436 tagctgcagagacacacaagcaatccctcaacacatccaa 475  Q
    ||   ||| ||||||||||||||||||||| || ||||||    
T  7334305 tactggcaaagacacacaagcaatccctcaccatatccaa 7334344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 9 - 470
Target Start/End: Original strand, 2658787 - 2659252
Alignment:
Q  9 aaaagcaatgttcaacctatagatyccatcaaccattgattaacaatgatccaacaaagtcaccaagactcaatgcaggcataaaata--aataacacca 106  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||||||| ||||| |||||||| | |||  |||||||||| |||  |||||||| |    
T  2658787 aaaagcaatgttcaacctatagattccatcaaccattaattaacaatgatctaacaa-gtcaccaaaa-tcagagcaggcataacatataaataacacaa 2658884  T
Q  107 cnnnnnnnnctaaccatatatatgttggagttgaatcccagcttaaggtgatatcaaactctcaatgtagacatttgagtatatcaggacatatttgttt 206  Q
             |||||||||||||||||| |||||||||   |||||||||||||| | ||||||||||||||| |  |  | | |  |   ||| ||||||    
T  2658885 --acaaaaactaaccatatatatgttgcagttgaatcaatgcttaaggtgatatgagactctcaatgtagacttcggcatgtgtatgtttatagttgttt 2658982  T
Q  207 tgaaactcaggaatattcaaagtaccagttttggaatcgtaaacaaccaacttatcattgccactttca-----atctcaataa-actcaaccaacagtt 300  Q
     ||||| |||||| |||||| || |||| ||| ||||| ||||||||||||||   || | ||| ||||     |||   || | | |  ||||| ||||    
T  2658983 cgaaacacaggaaaattcaatgtgccagctttagaatcataaacaaccaacttcatatcgtcacattcagcccaatcctgatgacattgtaccaatagtt 2659082  T
Q  301 ggtcatactcagaaatgtataaagcattgtagggttctaaaccccaatcttgcatgttaggaaccgtgtacaatttagtccaagactctttatttccata 400  Q
    |||||| ||| ||||| ||||||||  | | || ||||||| ||  |||||||| ||||||||  ||||||||||||||||||||||||| |||||||||    
T  2659083 ggtcatcctctgaaatatataaagctctatcggcttctaaatcctgatcttgcaggttaggaatagtgtacaatttagtccaagactcttgatttccata 2659182  T
Q  401 gtgtttcataatccaaacatccataaacatatcactagctgcagagacacacaagcaatccctcaacaca 470  Q
     |  ||||||||||||||||||  | |   |||||||  |||| ||||||||||||||||||||| ||||    
T  2659183 ctccttcataatccaaacatcccaatattcatcactacttgcaaagacacacaagcaatccctcaccaca 2659252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 116 - 259
Target Start/End: Complemental strand, 2502507 - 2502364
Alignment:
Q  116 ctaaccatatatatgttggagttgaatcccagcttaaggtgatatcaaactctcaatgtagacatttgagtatatcaggacatatttgttttgaaactca 215  Q
    |||||||||||||||||| ||||||||||  ||||||||||||||||||||||||||||||| | |||  | | |  |  |||| |||||||||||||||    
T  2502507 ctaaccatatatatgttgcagttgaatccatgcttaaggtgatatcaaactctcaatgtagaaaattgcatctctatgctcatagttgttttgaaactca 2502408  T
Q  216 ggaatattcaaagtaccagttttggaatcgtaaacaaccaactt 259  Q
    |||||||||||||| |||||||||||||| |||||||| |||||    
T  2502407 ggaatattcaaagtgccagttttggaatcataaacaacaaactt 2502364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 347 - 475
Target Start/End: Original strand, 9594601 - 9594729
Alignment:
Q  347 atcttgcatgttaggaaccgtgtacaatttagtccaagactctttatttccatagtgtttcataatccaaacatccataaacatatcactagctgcagag 446  Q
    ||||||||||||||||||   | ||||||||||||||||||||| |||||| || |  |||||||||||||||| || |||||||||||||| | || ||    
T  9594601 atcttgcatgttaggaacatggaacaatttagtccaagactcttcatttccgtacttattcataatccaaacattcaaaaacatatcactagtttcaaag 9594700  T
Q  447 acacacaagcaatccctcaacacatccaa 475  Q
    ||||||||||||||||||| |||||||||    
T  9594701 acacacaagcaatccctcagcacatccaa 9594729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 14 - 104
Target Start/End: Original strand, 767916 - 768005
Alignment:
Q  14 caatgttcaacctatagatyccatcaaccattgattaacaatgatccaacaaagtcaccaagactcaatgcaggcataaaataaataacac 104  Q
    ||||||| |||||||| || ||||||||||||||||||||||||||||||||| ||||||||| |||| ||||  ||||||||||||||||    
T  767916 caatgttgaacctatatattccatcaaccattgattaacaatgatccaacaaa-tcaccaagaatcaaagcagatataaaataaataacac 768005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 9 - 172
Target Start/End: Original strand, 7318553 - 7318715
Alignment:
Q  9 aaaagcaatgttcaacctatagatyccatcaaccattgattaacaatgatccaacaaagtcaccaagactcaatgcaggcataaaata--aataacacca 106  Q
    ||||||||||||||| |||||| | |||| ||||||||||||| ||||||| ||||| |||| ||||| |||  |||||||||| |||  |||||||| |    
T  7318553 aaaagcaatgttcaagctatagct-ccattaaccattgattaataatgatctaacaa-gtcatcaagaatcagagcaggcataacatataaataacacaa 7318650  T
Q  107 cnnnnnnnnctaaccatatatatgttggagttgaatcccagcttaaggtgatatcaaactctcaat 172  Q
             |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||    
T  7318651 -acaaaaaactaaccatatatatgttgcagttgaatcccagcttaaggtgatattaaactctcaat 7318715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 11 - 259
Target Start/End: Original strand, 9594250 - 9594495
Alignment:
Q  11 aagcaatgttcaacctatagatyccatcaaccattgattaacaatgatccaacaaagtcaccaagactcaatgcaggcataaaataaataacaccacnnn 110  Q
    |||||||||| ||||||||||| ||||||||||||||||||||||||||||  ||| ||||||||| |||| |||| |||||| |||| ||||           
T  9594250 aagcaatgttgaacctatagattccatcaaccattgattaacaatgatcca--aaattcaccaagaatcaaagcagacataaattaaacaaca------- 9594340  T
Q  111 nnnnnctaaccatatatatgttggagttgaatcccagc------ttaaggtgatatcaaactctcaatgtagacatttgagtatatcaggacatatttgt 204  Q
         |||||||||| ||| ||| ||| |||| |  ||      |||||||||||| | |||||||||||||||  ||| ||   || |  || | ||||    
T  9594341 aacaactaaccatatgtatattgaagtcgaatgcatgctttaagttaaggtgatatgagactctcaatgtagactattgggtgcttctgagcacagttgt 9594440  T
Q  205 tttgaaactcaggaatattcaaagtaccagttttggaatcgtaaacaaccaactt 259  Q
    ||||||||||| ||||||| |||||| |||||||||||||||||||| |||||||    
T  9594441 tttgaaactcaagaatattaaaagtaacagttttggaatcgtaaacagccaactt 9594495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 164 - 475
Target Start/End: Original strand, 768120 - 768434
Alignment:
Q  164 actctcaatgtagacatttgagtatatcaggacatatttgttttgaaactcaggaatattcaaagtaccagttttggaatcgtaaacaaccaacttatca 263  Q
    ||||||||||||||| |||| ||  ||| |  |||| ||||||||||||||| ||||||| |||||| ||||||||||||||||||||||||||||   |    
T  768120 actctcaatgtagacttttgggttcatctgagcatagttgttttgaaactcaagaatattaaaagtagcagttttggaatcgtaaacaaccaacttccta 768219  T
Q  264 ttgccactttcaatctcaataaactcaaccaacagttggtcatactcagaaatgtataaagcattgtagggttctaaaccc---caatcttgcatgttag 360  Q
    | || | ||||||  | || |||||| |||| |||||  |||| |||| |||| |||||||| || ||||     | ||||     ||  || |  ||||    
T  768220 tcgcaagtttcaacataaaaaaactccaccagcagtttctcatcctcaaaaatatataaagctttataggccctgagaccctgatgattgtgaactttag 768319  T
Q  361 gaaccgtgtacaatttagtccaagactctttatttccatagtgtttcataatccaaacatccataaacatatcactagctgcagagacacacaagcaatc 460  Q
    ||||   | ||||||||||||||||||||| |||||| || |  ||||||||||||||||  | |||||| |||||||   || | ||||||||||||||    
T  768320 gaacatggaacaatttagtccaagactcttcatttccgtactcattcataatccaaacattaaaaaacatttcactagtgtcaaatacacacaagcaatc 768419  T
Q  461 cctcaacacatccaa 475  Q
    |||||||||| ||||    
T  768420 cctcaacacacccaa 768434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 347 - 481
Target Start/End: Complemental strand, 7942559 - 7942425
Alignment:
Q  347 atcttgcatgttaggaaccgtgtacaatttagtccaagactctttatttccatagtgtttcataatccaaacatccataaacatatcactagctgcagag 446  Q
    ||||| ||||| ||||||  ||||||||||| |||||||||||||||| ||||| |  |||||||||||||||||||  ||||| | ||||  |||| ||    
T  7942559 atcttccatgtaaggaacattgtacaatttaatccaagactctttattaccatactccttcataatccaaacatccaataacatcttactacgtgcaaag 7942460  T
Q  447 acacacaagcaatccctcaacacatccaaggtcca 481  Q
      |||||| |||||||||| |||  ||||||||||    
T  7942459 gtacacaaacaatccctcaccacccccaaggtcca 7942425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 204 - 259
Target Start/End: Original strand, 666992 - 667047
Alignment:
Q  204 ttttgaaactcaggaatattcaaagtaccagttttggaatcgtaaacaaccaactt 259  Q
    |||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||    
T  666992 ttttgaaactcaggaatattcaaagtactagtcttggaatcataaacaaccaactt 667047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 367 - 434
Target Start/End: Complemental strand, 13498278 - 13498211
Alignment:
Q  367 tgtacaatttagtccaagactctttatttccatagtgtttcataatccaaacatccataaacatatca 434  Q
    |||| ||||||||||||||||||||||||||||| |  ||||||||||||||||||| ||| ||||||    
T  13498278 tgtataatttagtccaagactctttatttccatattccttcataatccaaacatccacaaagatatca 13498211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 302 - 400
Target Start/End: Original strand, 746315 - 746413
Alignment:
Q  302 gtcatactcagaaatgtataaagcattgtagggttctaaaccccaatcttgcatgttaggaaccgtgtacaatttagtccaagactctttatttccata 400  Q
    ||||| ||||||||| |||||| | || |||| |   |||||||||||||| | |||||||||  |||||||||||||||||||||||| |||||||||    
T  746315 gtcatcctcagaaatatataaatctttataggctatgaaaccccaatcttgtaggttaggaacaatgtacaatttagtccaagactcttgatttccata 746413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 359 - 429
Target Start/End: Original strand, 37753334 - 37753404
Alignment:
Q  359 aggaaccgtgtacaatttagtccaagactctttatttccatagtgtttcataatccaaacatccataaaca 429  Q
    ||||||| || |||||||||||||||||||||| |||||||| |  | |||||||||||||||||||||||    
T  37753334 aggaaccttgcacaatttagtccaagactctttctttccatattcctccataatccaaacatccataaaca 37753404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 366 - 463
Target Start/End: Complemental strand, 2502203 - 2502106
Alignment:
Q  366 gtgtacaatttagtccaagactctttatttccatagtgtttcataatccaaacatccataaacatatcactagctgcagagacacacaagcaatccct 463  Q
    ||||||| |||||||||| |||| ||||||||||| |  ||||||||||||||||||  | |   ||||||| ||||| |||||||||||||||||||    
T  2502203 gtgtacagtttagtccaaaactccttatttccatactccttcataatccaaacatcccaatattcatcactacctgcaaagacacacaagcaatccct 2502106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 369 - 437
Target Start/End: Complemental strand, 43992012 - 43991944
Alignment:
Q  369 tacaatttagtccaagactctttatttccatagtgtttcataatccaaacatccataaacatatcacta 437  Q
    |||||||| |||||||||||| |||||||||| |  ||||||||||||||||||| |||||||| ||||    
T  43992012 tacaatttggtccaagactctatatttccatattccttcataatccaaacatccaaaaacatatgacta 43991944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 368 - 435
Target Start/End: Complemental strand, 2456302 - 2456235
Alignment:
Q  368 gtacaatttagtccaagactctttatttccatagtgtttcataatccaaacatccataaacatatcac 435  Q
    |||||||||||||||||| |||||||||||||| |  ||||||| ||||||||||  |||||||||||    
T  2456302 gtacaatttagtccaagagtctttatttccatattccttcataacccaaacatcccaaaacatatcac 2456235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 38 - 104
Target Start/End: Original strand, 666829 - 666894
Alignment:
Q  38 caaccattgattaacaatgatccaacaaagtcaccaagactcaatgcaggcataaaataaataacac 104  Q
    |||||||||||||||||||||||||| |||||||||||| |||| | | ||||||||||||| ||||    
T  666829 caaccattgattaacaatgatccaac-aagtcaccaagaatcaaaggaagcataaaataaattacac 666894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 367 - 481
Target Start/End: Original strand, 7430533 - 7430647
Alignment:
Q  367 tgtacaatttagtccaagactctttatttccatagtgtttcataatccaaacatccataaacatatcactagctgcagagacacacaagcaatccctcaa 466  Q
    |||||||||||||| |||||| |||||||||||| |  ||||||||||||||||||| ||||  || || |  |||| |||  ||||||||||||  |||    
T  7430533 tgtacaatttagtctaagactttttatttccatacttcttcataatccaaacatccaaaaacccatgacaacttgcaaagatgcacaagcaatcctacaa 7430632  T
Q  467 cacatccaaggtcca 481  Q
    |||| ||||| ||||    
T  7430633 cacacccaagatcca 7430647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 367 - 437
Target Start/End: Original strand, 14888609 - 14888679
Alignment:
Q  367 tgtacaatttagtccaagactctttatttccatagtgtttcataatccaaacatccataaacatatcacta 437  Q
    |||||||||||||| ||| |||||||||| |||| |  |||||||||||||| |||| |||||||||||||    
T  14888609 tgtacaatttagtctaaggctctttattttcatattcattcataatccaaacctccacaaacatatcacta 14888679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 367 - 436
Target Start/End: Original strand, 9587182 - 9587251
Alignment:
Q  367 tgtacaatttagtccaagactctttatttccatagtgtttcataatccaaacatccataaacatatcact 436  Q
    |||||||||| ||||||| ||||||||||||||| |  |||||||||||||| |||| || |||||||||    
T  9587182 tgtacaattttgtccaaggctctttatttccatattccttcataatccaaacctccacaagcatatcact 9587251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 370 - 422
Target Start/End: Complemental strand, 2442090 - 2442038
Alignment:
Q  370 acaatttagtccaagactctttatttccatagtgtttcataatccaaacatcc 422  Q
    |||||||||||||||| |||||||||||||| |  ||||||||||||||||||    
T  2442090 acaatttagtccaagaatctttatttccatactccttcataatccaaacatcc 2442038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 353 - 421
Target Start/End: Original strand, 4142117 - 4142185
Alignment:
Q  353 catgttaggaaccgtgtacaatttagtccaagactctttatttccatagtgtttcataatccaaacatc 421  Q
    ||||| |||||  ||| ||||||||||||||||||||||||||||||| |  ||||||| |||||||||    
T  4142117 catgtaaggaatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaacatc 4142185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 368 - 435
Target Start/End: Original strand, 771497 - 771564
Alignment:
Q  368 gtacaatttagtccaagactctttatttccatagtgtttcataatccaaacatccataaacatatcac 435  Q
    |||||||||||||||||| ||| |||||||||| |  ||||||| ||||||||||  |||||||||||    
T  771497 gtacaatttagtccaagagtctgtatttccatattccttcataacccaaacatcccaaaacatatcac 771564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 370 - 421
Target Start/End: Original strand, 803218 - 803269
Alignment:
Q  370 acaatttagtccaagactctttatttccatagtgtttcataatccaaacatc 421  Q
    |||| |||||||||||||||||||||||||| | |||||||| |||||||||    
T  803218 acaacttagtccaagactctttatttccatattctttcataacccaaacatc 803269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 370 - 421
Target Start/End: Original strand, 2678399 - 2678450
Alignment:
Q  370 acaatttagtccaagactctttatttccatagtgtttcataatccaaacatc 421  Q
    ||||||||||||| |||||||| |||||||| |||||||||| |||||||||    
T  2678399 acaatttagtccatgactctttttttccatattgtttcataacccaaacatc 2678450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 370 - 421
Target Start/End: Original strand, 2696732 - 2696783
Alignment:
Q  370 acaatttagtccaagactctttatttccatagtgtttcataatccaaacatc 421  Q
    |||||||| |||||||||||||||||||||| |  |||||||||||||||||    
T  2696732 acaatttaatccaagactctttatttccatattccttcataatccaaacatc 2696783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 370 - 421
Target Start/End: Complemental strand, 3754651 - 3754600
Alignment:
Q  370 acaatttagtccaagactctttatttccatagtgtttcataatccaaacatc 421  Q
    ||||||||||||||||||||||||||||||| |  ||||||| |||||||||    
T  3754651 acaatttagtccaagactctttatttccatattccttcataacccaaacatc 3754600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 370 - 421
Target Start/End: Original strand, 4157944 - 4157995
Alignment:
Q  370 acaatttagtccaagactctttatttccatagtgtttcataatccaaacatc 421  Q
    ||||||||||||||||||||||||||||||| |  ||||||| |||||||||    
T  4157944 acaatttagtccaagactctttatttccatattccttcataagccaaacatc 4157995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 202 - 257
Target Start/End: Complemental strand, 43992182 - 43992127
Alignment:
Q  202 tgttttgaaactcaggaatattcaaagtaccagttttggaatcgtaaacaaccaac 257  Q
    ||||||||| ||||||||| |||| ||||||| ||||||||||||||||| |||||    
T  43992182 tgttttgaatctcaggaatcttcagagtaccatttttggaatcgtaaacagccaac 43992127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 347 - 421
Target Start/End: Complemental strand, 989470 - 989396
Alignment:
Q  347 atcttgcatgttaggaaccgtgtacaatttagtccaagactctttatttccatagtgtttcataatccaaacatc 421  Q
    ||||||||||| || ||  ||| |||||||||||||||||||||||||||| || | |||||| | |||||||||    
T  989470 atcttgcatgtaagaaatagtgaacaatttagtccaagactctttatttccgtactctttcattacccaaacatc 989396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 368 - 437
Target Start/End: Complemental strand, 1438048 - 1437980
Alignment:
Q  368 gtacaatttagtccaagactctttatttccatagtgtttcataatccaaacatccataaacatatcacta 437  Q
    |||||||||| ||||||| |||||||||||||| |  ||||||| ||||||||||| ||||||| |||||    
T  1438048 gtacaatttaatccaagagtctttatttccatattccttcataa-ccaaacatccagaaacataccacta 1437980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 370 - 419
Target Start/End: Complemental strand, 2459326 - 2459277
Alignment:
Q  370 acaatttagtccaagactctttatttccatagtgtttcataatccaaaca 419  Q
    ||||||| ||||||||||||||||||||||| |  |||||||||||||||    
T  2459326 acaattttgtccaagactctttatttccatattccttcataatccaaaca 2459277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 202 - 259
Target Start/End: Complemental strand, 7942707 - 7942650
Alignment:
Q  202 tgttttgaaactcaggaatattcaaagtaccagttttggaatcgtaaacaaccaactt 259  Q
    ||||||||| |||| |||| ||||||||| |  |||||||||||||||||||||||||    
T  7942707 tgttttgaatctcatgaatcttcaaagtatcgtttttggaatcgtaaacaaccaactt 7942650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 353 - 433
Target Start/End: Original strand, 783782 - 783862
Alignment:
Q  353 catgttaggaaccgtgtacaatttagtccaagactctttatttccatagtgtttcataatccaaacatccataaacatatc 433  Q
    ||||| |||||| || |||||||||||||| | || | |||||||||| |  ||||||||||||||||||| || ||||||    
T  783782 catgtaaggaacagtatacaatttagtccatggctttgtatttccatattccttcataatccaaacatccacaagcatatc 783862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 369 - 421
Target Start/End: Original strand, 1891063 - 1891115
Alignment:
Q  369 tacaatttagtccaagactctttatttccatagtgtttcataatccaaacatc 421  Q
    ||||||||||||||||| |||||||||||||  |  |||||||||||||||||    
T  1891063 tacaatttagtccaagagtctttatttccatgttccttcataatccaaacatc 1891115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 367 - 435
Target Start/End: Original strand, 9608341 - 9608409
Alignment:
Q  367 tgtacaatttagtccaagactctttatttccatagtgtttcataatccaaacatccataaacatatcac 435  Q
    |||| |||||||||||||| ||| |||||||||| |  ||||||| ||||||||| | |||||||||||    
T  9608341 tgtataatttagtccaagaatctatatttccatattccttcataacccaaacatcaaaaaacatatcac 9608409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 405 - 464
Target Start/End: Original strand, 747179 - 747238
Alignment:
Q  405 ttcataatccaaacatccataaacatatcactagctgcagagacacacaagcaatccctc 464  Q
    ||||||||||||| || ||||||  ||||||||| |  ||||||||||||||||||||||    
T  747179 ttcataatccaaatattcataaatgtatcactagttcgagagacacacaagcaatccctc 747238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 339 - 437
Target Start/End: Original strand, 37757705 - 37757803
Alignment:
Q  339 aaaccccaatcttgcatgttaggaaccgtgtacaatttagtccaagactctttatttccatagtgtttcataatccaaacatccataaacatatcacta 437  Q
    |||||||||| || || || ||||||  ||||||| || |||||||||||||| |||||||| |  ||||||||||| | ||||| | |||| ||||||    
T  37757705 aaaccccaattttccacgtaaggaacactgtacaacttcgtccaagactctttgtttccatattccttcataatccatatatccaaacacatttcacta 37757803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 259
Target Start/End: Original strand, 771325 - 771382
Alignment:
Q  202 tgttttgaaactcaggaatattcaaagtaccagttttggaatcgtaaacaaccaactt 259  Q
    ||||||||| || |||||  |||||||||||| ||||||||| ||||||||| |||||    
T  771325 tgttttgaatcttaggaaacttcaaagtaccacttttggaattgtaaacaactaactt 771382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #50
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 259
Target Start/End: Complemental strand, 2456471 - 2456414
Alignment:
Q  202 tgttttgaaactcaggaatattcaaagtaccagttttggaatcgtaaacaaccaactt 259  Q
    ||||||||| || |||||  |||||||||||| ||||||||| ||||||||| |||||    
T  2456471 tgttttgaatcttaggaaacttcaaagtaccacttttggaattgtaaacaactaactt 2456414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #51
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 259
Target Start/End: Original strand, 9587018 - 9587071
Alignment:
Q  206 ttgaaactcaggaatattcaaagtaccagttttggaatcgtaaacaaccaactt 259  Q
    |||||||||||| ||||| ||||||||| |||||||||| || |||| ||||||    
T  9587018 ttgaaactcaggtatattaaaagtaccatttttggaatcatagacaaacaactt 9587071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #52
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 7 - 45
Target Start/End: Original strand, 7442588 - 7442626
Alignment:
Q  7 ataaaagcaatgttcaacctatagatyccatcaaccatt 45  Q
    |||||| | ||||||||||||||||| ||||||||||||    
T  7442588 ataaaaactatgttcaacctatagattccatcaaccatt 7442626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #53
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 150 - 178
Target Start/End: Original strand, 9586959 - 9586987
Alignment:
Q  150 taaggtgatatcaaactctcaatgtagac 178  Q
    |||||||||||||||||||||||||||||    
T  9586959 taaggtgatatcaaactctcaatgtagac 9586987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #54
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 116 - 179
Target Start/End: Original strand, 9608074 - 9608138
Alignment:
Q  116 ctaaccatatatatgttggagttgaatccca-gcttaaggtgatatcaaactctcaatgtagaca 179  Q
    ||||| |||||||||| | | ||||||| || |||||||||||||||||||||||  ||||||||    
T  9608074 ctaacaatatatatgtagcacttgaatctcatgcttaaggtgatatcaaactctcgttgtagaca 9608138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #55
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 203 - 259
Target Start/End: Complemental strand, 12218248 - 12218192
Alignment:
Q  203 gttttgaaactcaggaatattcaaagtaccagttttggaatcgtaaacaaccaactt 259  Q
    |||| ||||||  ||||| |||||||||||| |||||||| | ||||||||||||||    
T  12218248 gtttagaaacttgggaatcttcaaagtaccaattttggaaccataaacaaccaactt 12218192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 202 - 466
Target Start/End: Complemental strand, 33020535 - 33020268
Alignment:
Q  202 tgttttgaaactcaggaatattcaaagtaccagttttggaatcgtaaacaaccaacttatcattgccactttcaatctcaataaactcaaccaacagttg 301  Q
    ||||||||| ||||||||| ||||||||||||  ||||||||||||||||||||||||    || |||||||| | |||  |||| || | || || |||    
T  33020535 tgttttgaatctcaggaatcttcaaagtaccatctttggaatcgtaaacaaccaacttcaatttaccactttccaactccttaaagtccatcagcaattg 33020436  T
Q  302 gtcatactcagaaatgtataaagcattg---tagggttctaaaccccaatcttgcatgttaggaaccgtgtacaatttagtccaagactctttatttcca 398  Q
     |||| ||||||||| |||||||| ||    ||| |    ||||||| ||||| ||||| ||||||   ||||||| |||||||||||| ||||||||||    
T  33020435 ttcatcctcagaaatatataaagcctttgtatagtgacacaaaccccgatcttccatgtaaggaacacggtacaatctagtccaagactttttatttcca 33020336  T
Q  399 tagtgtttcataatccaaacatccataaacatatcactagctgcagagacacacaagcaatccctcaa 466  Q
    || |  ||||||||||| ||||  | |||||||||||||  |||| |||  |||||||||||||||||    
T  33020335 tattccttcataatccacacattaaaaaacatatcactatttgcaaagaagcacaagcaatccctcaa 33020268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 339 - 466
Target Start/End: Complemental strand, 33038242 - 33038115
Alignment:
Q  339 aaaccccaatcttgcatgttaggaaccgtgtacaatttagtccaagactctttatttccatagtgtttcataatccaaacatccataaacatatcactag 438  Q
    ||||||| ||||| ||||| ||||||   ||||||| |||||||||||| ||| |||||||| |  ||||||||||||||||| | |||||||||||||     
T  33038242 aaaccccgatcttccatgtaaggaacacggtacaatctagtccaagactttttgtttccatattccttcataatccaaacatcaaaaaacatatcactac 33038143  T
Q  439 ctgcagagacacacaagcaatccctcaa 466  Q
     |||| |||  |||||||||||||||||    
T  33038142 ttgcaaagatgcacaagcaatccctcaa 33038115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 368 - 434
Target Start/End: Complemental strand, 33026710 - 33026644
Alignment:
Q  368 gtacaatttagtccaagactctttatttccatagtgtttcataatccaaacatccataaacatatca 434  Q
    ||||||| |||||||||||| |||||||||||| || ||||||| ||||||||||| ||||||||||    
T  33026710 gtacaatctagtccaagactttttatttccatattgcttcataacccaaacatccaaaaacatatca 33026644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 353 - 431
Target Start/End: Original strand, 34560900 - 34560978
Alignment:
Q  353 catgttaggaaccgtgtacaatttagtccaagactctttatttccatagtgtttcataatccaaacatccataaacata 431  Q
    ||||||||||||  | ||||||||||||||||| | |||||||||||| | |||||||||  ||||||||||| |||||    
T  34560900 catgttaggaacactatacaatttagtccaagattttttatttccatattctttcataattgaaacatccatagacata 34560978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 370 - 421
Target Start/End: Complemental strand, 36577417 - 36577366
Alignment:
Q  370 acaatttagtccaagactctttatttccatagtgtttcataatccaaacatc 421  Q
    |||||||| |||||||||||||||||||||| |  |||||||||||||||||    
T  36577417 acaatttaatccaagactctttatttccatattccttcataatccaaacatc 36577366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 259
Target Start/End: Complemental strand, 33026882 - 33026825
Alignment:
Q  202 tgttttgaaactcaggaatattcaaagtaccagttttggaatcgtaaacaaccaactt 259  Q
    ||||||||| |  |||||| | ||||||||||  ||||||||||||||||||||||||    
T  33026882 tgttttgaatcgtaggaatctccaaagtaccatctttggaatcgtaaacaaccaactt 33026825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 259
Target Start/End: Complemental strand, 33038414 - 33038357
Alignment:
Q  202 tgttttgaaactcaggaatattcaaagtaccagttttggaatcgtaaacaaccaactt 259  Q
    ||||||||| ||||||||| | ||||||||||   |||||||||||||||| ||||||    
T  33038414 tgttttgaatctcaggaatctccaaagtaccatcattggaatcgtaaacaaacaactt 33038357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 147 - 259
Target Start/End: Complemental strand, 41456367 - 41456255
Alignment:
Q  147 gcttaaggtgatatcaaactctcaatgtagacatttgagtatatcaggacatatttgttttgaaactcaggaatattcaaagtaccagttttggaatcgt 246  Q
    |||||||||||||| |||||||||||||||| ||| | || | || |  |||| ||||||||||||||||||||||||||||||||| | ||| |||| |    
T  41456367 gcttaaggtgatattaaactctcaatgtagatattagggtctgtccgttcatagttgttttgaaactcaggaatattcaaagtaccaatcttgaaatcat 41456268  T
Q  247 aaacaaccaactt 259  Q
    |||||||||||||    
T  41456267 aaacaaccaactt 41456255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 347 - 417
Target Start/End: Original strand, 20016162 - 20016232
Alignment:
Q  347 atcttgcatgttaggaaccgtgtacaatttagtccaagactctttatttccatagtgtttcataatccaaa 417  Q
    |||||||||||||| ||  ||| ||||||||||||||||||||| | ||||||| |  ||||| |||||||    
T  20016162 atcttgcatgttagaaagagtgaacaatttagtccaagactcttgaattccatattccttcatgatccaaa 20016232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 347 - 421
Target Start/End: Original strand, 20019749 - 20019823
Alignment:
Q  347 atcttgcatgttaggaaccgtgtacaatttagtccaagactctttatttccatagtgtttcataatccaaacatc 421  Q
    |||||||||||||| ||  ||| ||||||||||||||||||||| | ||||||| |  ||||| | |||||||||    
T  20019749 atcttgcatgttagaaagagtgaacaatttagtccaagactcttgaattccatattccttcatgacccaaacatc 20019823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 347 - 482
Target Start/End: Complemental strand, 89217 - 89082
Alignment:
Q  347 atcttgcatgttaggaaccgtgtacaatttagtccaagactctttatttccatagtgtttcataatccaaacatccataaacatatcactagctgcagag 446  Q
    ||||| ||||| ||||||  |||||||||||||||||||||||||||||||||| |  ||||||| ||||| ||| | ||| |||||||||  || | ||    
T  89217 atcttccatgtaaggaacattgtacaatttagtccaagactctttatttccatattccttcataacccaaatatcaaaaaatatatcactacttgtaaag 89118  T
Q  447 acacacaagcaatccctcaacacatccaaggtccac 482  Q
    |  |||||||||||| | |||||  |||||||||||    
T  89117 atgcacaagcaatccgttaacacccccaaggtccac 89082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 151 - 256
Target Start/End: Complemental strand, 89416 - 89311
Alignment:
Q  151 aaggtgatatcaaactctcaatgtagacatttgagtatatcaggacatatttgttttgaaactcaggaatattcaaagtaccagttttggaatcgtaaac 250  Q
    |||||||||||||||||||||||||||| |||| ||  ||| |   ||   ||||||||| | ||||||| |||||||||||| |||| ||||| |||||    
T  89416 aaggtgatatcaaactctcaatgtagacttttgggtccatccgacgattgatgttttgaatcacaggaatcttcaaagtaccattttttgaatcataaac 89317  T
Q  251 aaccaa 256  Q
    ||||||    
T  89316 aaccaa 89311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 367 - 475
Target Start/End: Complemental strand, 20293049 - 20292941
Alignment:
Q  367 tgtacaatttagtccaagactctttatttccatagtgtttcataatccaaacatccataaacatatcactagctgcagagacacacaagcaatccctcaa 466  Q
    |||| ||||||||||||||||||||| ||||||| |  ||||||||||||||||||| |  || |||||||| | || |||  |||||||||||||||||    
T  20293049 tgtataatttagtccaagactctttaattccatattccttcataatccaaacatccaaatccagatcactagttacatagatgcacaagcaatccctcaa 20292950  T
Q  467 cacatccaa 475  Q
     || |||||    
T  20292949 aacctccaa 20292941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 370 - 421
Target Start/End: Original strand, 23766862 - 23766913
Alignment:
Q  370 acaatttagtccaagactctttatttccatagtgtttcataatccaaacatc 421  Q
    ||||||||||||||||||||||||||||||| | ||||||||||||||||||    
T  23766862 acaatttagtccaagactctttatttccatattctttcataatccaaacatc 23766913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 370 - 421
Target Start/End: Original strand, 23816710 - 23816761
Alignment:
Q  370 acaatttagtccaagactctttatttccatagtgtttcataatccaaacatc 421  Q
    ||||||||||||||||||||||||||||||| | ||||||||||||||||||    
T  23816710 acaatttagtccaagactctttatttccatattctttcataatccaaacatc 23816761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 367 - 475
Target Start/End: Complemental strand, 20301497 - 20301389
Alignment:
Q  367 tgtacaatttagtccaagactctttatttccatagtgtttcataatccaaacatccataaacatatcactagctgcagagacacacaagcaatccctcaa 466  Q
    |||| ||||||||||||||||||||| || |||| |  ||||||||||||||||||| |  || |||||||| | || |||  |||||||||||||||||    
T  20301497 tgtataatttagtccaagactctttaattgcatattccttcataatccaaacatccaaatccagatcactagttacatagatgcacaagcaatccctcaa 20301398  T
Q  467 cacatccaa 475  Q
     || |||||    
T  20301397 aacctccaa 20301389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 367 - 475
Target Start/End: Complemental strand, 20305910 - 20305802
Alignment:
Q  367 tgtacaatttagtccaagactctttatttccatagtgtttcataatccaaacatccataaacatatcactagctgcagagacacacaagcaatccctcaa 466  Q
    |||| ||||||||||||||||||||| ||||||| |  ||||||||||| ||||||| |  || |||||||| | || |||  |||||||||||||||||    
T  20305910 tgtataatttagtccaagactctttaattccatattccttcataatccagacatccaaatccagatcactagttacatagatgcacaagcaatccctcaa 20305811  T
Q  467 cacatccaa 475  Q
     || |||||    
T  20305810 aacctccaa 20305802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 367 - 475
Target Start/End: Complemental strand, 20310314 - 20310206
Alignment:
Q  367 tgtacaatttagtccaagactctttatttccatagtgtttcataatccaaacatccataaacatatcactagctgcagagacacacaagcaatccctcaa 466  Q
    |||| ||||||||||||||||||||| ||||||| |  ||||||||||| ||||||| |  || |||||||| | || |||  |||||||||||||||||    
T  20310314 tgtataatttagtccaagactctttaattccatattccttcataatccagacatccaaatccagatcactagttacatagatgcacaagcaatccctcaa 20310215  T
Q  467 cacatccaa 475  Q
     || |||||    
T  20310214 aacctccaa 20310206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 370 - 421
Target Start/End: Complemental strand, 11081864 - 11081813
Alignment:
Q  370 acaatttagtccaagactctttatttccatagtgtttcataatccaaacatc 421  Q
    ||||||||||||||||||||||||||||||| |  ||||||| |||||||||    
T  11081864 acaatttagtccaagactctttatttccatactccttcataacccaaacatc 11081813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 116 - 183
Target Start/End: Complemental strand, 20301743 - 20301675
Alignment:
Q  116 ctaaccatatatatgttggagttgaatccca-gcttaaggtgatatcaaactctcaatgtagacatttg 183  Q
    |||||||||| ||||||| || ||| || || |||||||||||||| ||||||||||||||||| ||||    
T  20301743 ctaaccatatctatgttgcagctgagtctcatgcttaaggtgatattaaactctcaatgtagacttttg 20301675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 116 - 183
Target Start/End: Complemental strand, 20306156 - 20306088
Alignment:
Q  116 ctaaccatatatatgttggagttgaatccca-gcttaaggtgatatcaaactctcaatgtagacatttg 183  Q
    |||||||||| ||||||| || ||| || || |||||||||||||| ||||||||||||||||| ||||    
T  20306156 ctaaccatatctatgttgcagctgagtctcatgcttaaggtgatattaaactctcaatgtagacttttg 20306088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 116 - 183
Target Start/End: Complemental strand, 20310560 - 20310492
Alignment:
Q  116 ctaaccatatatatgttggagttgaatccca-gcttaaggtgatatcaaactctcaatgtagacatttg 183  Q
    |||||||||| ||||||| || ||| || || |||||||||||||| ||||||||||||||||| ||||    
T  20310560 ctaaccatatctatgttgcagctgagtctcatgcttaaggtgatattaaactctcaatgtagacttttg 20310492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 370 - 421
Target Start/End: Original strand, 23769646 - 23769697
Alignment:
Q  370 acaatttagtccaagactctttatttccatagtgtttcataatccaaacatc 421  Q
    ||||||||||||||||| ||||||| ||||| |  |||||||||||||||||    
T  23769646 acaatttagtccaagacgctttattcccatattccttcataatccaaacatc 23769697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 370 - 421
Target Start/End: Original strand, 23819494 - 23819545
Alignment:
Q  370 acaatttagtccaagactctttatttccatagtgtttcataatccaaacatc 421  Q
    ||||||||||||||||| ||||||| ||||| |  |||||||||||||||||    
T  23819494 acaatttagtccaagacgctttattcccatattccttcataatccaaacatc 23819545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 147 - 183
Target Start/End: Complemental strand, 20293264 - 20293228
Alignment:
Q  147 gcttaaggtgatatcaaactctcaatgtagacatttg 183  Q
    |||||||||||||| ||||||||||||||||| ||||    
T  20293264 gcttaaggtgatattaaactctcaatgtagacttttg 20293228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 367 - 420
Target Start/End: Original strand, 24417483 - 24417536
Alignment:
Q  367 tgtacaatttagtccaagactctttatttccatagtgtttcataatccaaacat 420  Q
    ||||||||||||||||||| |||||||||||||| | |||||||||||||||||    
T  24417483 tgtacaatttagtccaagattctttatttccatattctttcataatccaaacat 24417536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 427
Target Start/End: Original strand, 370785 - 370842
Alignment:
Q  370 acaatttagtccaagactctttatttccatagtgtttcataatccaaacatccataaa 427  Q
    |||||||||||||||| |||||||||||||| |  ||||||| ||||||  |||||||    
T  370785 acaatttagtccaagaatctttatttccataattcttcataacccaaacgcccataaa 370842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 423
Target Start/End: Original strand, 1459541 - 1459594
Alignment:
Q  370 acaatttagtccaagactctttatttccatagtgtttcataatccaaacatcca 423  Q
    |||||||||||||||| |||||||||||| | | |||||||| ||||| |||||    
T  1459541 acaatttagtccaagattctttatttccaaaatctttcataacccaaatatcca 1459594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 423
Target Start/End: Original strand, 1470923 - 1470976
Alignment:
Q  370 acaatttagtccaagactctttatttccatagtgtttcataatccaaacatcca 423  Q
    ||||||||| |||||| |||||||||||||| | |||||||| ||||| |||||    
T  1470923 acaatttagaccaagaatctttatttccataatctttcataacccaaatatcca 1470976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 203 - 286
Target Start/End: Complemental strand, 34221 - 34138
Alignment:
Q  203 gttttgaaactcaggaatattcaaagtaccagttttggaatcgtaaacaaccaacttatcattgccactttcaatctcaataaa 286  Q
    ||||||||||| |||||||||| |||| |||||||||| ||| ||||||||||| ||  ||| ||||  ||||| |||||||||    
T  34221 gttttgaaactgaggaatattcgaagtgccagttttggtatcataaacaaccaaattcacatcgccaacttcaacctcaataaa 34138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 116 - 156
Target Start/End: Complemental strand, 34271 - 34231
Alignment:
Q  116 ctaaccatatatatgttggagttgaatcccagcttaaggtg 156  Q
    |||||||||||||||||| ||||||||||  ||||||||||    
T  34271 ctaaccatatatatgttgcagttgaatccatgcttaaggtg 34231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 370 - 417
Target Start/End: Original strand, 51381455 - 51381502
Alignment:
Q  370 acaatttagtccaagactctttatttccatagtgtttcataatccaaa 417  Q
    ||||||||||||||||||||| ||||||||| | ||||||||||||||    
T  51381455 acaatttagtccaagactcttcatttccatattctttcataatccaaa 51381502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 259
Target Start/End: Complemental strand, 39299198 - 39299142
Alignment:
Q  202 tgttttgaaactcaggaatattcaaagtaccagttttggaatcgtaaacaaccaactt 259  Q
    ||||| ||| |||||||||||| ||||||||| ||||||||| ||||||||| |||||    
T  39299198 tgtttagaatctcaggaatattaaaagtaccatttttggaat-gtaaacaactaactt 39299142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 370 - 422
Target Start/End: Original strand, 1078160 - 1078212
Alignment:
Q  370 acaatttagtccaagactctttatttccatagtgtttcataatccaaacatcc 422  Q
    ||||||||||||| |||||| |||||||||| |  ||||||| ||||||||||    
T  1078160 acaatttagtccacgactctctatttccatactccttcataacccaaacatcc 1078212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 347 - 431
Target Start/End: Complemental strand, 39299051 - 39298967
Alignment:
Q  347 atcttgcatgttaggaaccgtgtacaatttagtccaagactctttatttccatagtgtttcataatccaaacatccataaacata 431  Q
    ||||| ||||| ||||||  |||| ||||||||||| ||||||||||||||| | |  |||| || ||||||||| | |||||||    
T  39299051 atcttccatgtaaggaacactgtaaaatttagtccaggactctttatttccacattccttcaaaacccaaacatcaaaaaacata 39298967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 371 - 427
Target Start/End: Original strand, 32330 - 32386
Alignment:
Q  371 caatttagtccaagactctttatttccatagtgtttcataatccaaacatccataaa 427  Q
    ||||||| ||||||| |||||||||||||| |  ||||||| ||||||||| |||||    
T  32330 caatttaatccaagagtctttatttccatattccttcataagccaaacatcaataaa 32386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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