View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2859-Insertion-12 (Length: 500)
Name: NF2859-Insertion-12
Description: NF2859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2859-Insertion-12 |
 | |
|
| [»] chr1 (3 HSPs) |
| |
|
| [»] chr6 (1 HSPs) |
| |
|
| [»] scaffold0219 (1 HSPs) |
| |
|
| [»] chr7 (4 HSPs) |
| |
|
| [»] scaffold0527 (4 HSPs) |
| |
|
| [»] chr5 (3 HSPs) |
| |
|
| [»] chr3 (2 HSPs) |
| |
|
| [»] chr2 (3 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 358; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 7 - 500
Target Start/End: Original strand, 16178393 - 16178881
Alignment:
| Q |
7 |
actctagacaaccacaagcatggaaaatccagcgaacctatatatgtgggcgaaacggaattgcnnnnnnnncgcagaatgaatattctaaacatttaaa |
106 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||| |||| |||||||||||||| |||||||| |
|
|
| T |
16178393 |
actctagacaaccactagcatggaaaatctggcgaacctacatatgtgggcgaaacggaattgcaaaaaaaacgcaaaatgaatattctaagcatttaaa |
16178492 |
T |
|
| Q |
107 |
tagacgtattgatcatttgccattaacaccgtttcgaggtaaatcaaccacctactaactgaattcacagagtcgtagtgatcttgaaatttcatcgcag |
206 |
Q |
| |
|
|||| |||||| ||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16178493 |
tagatgtattggtcatttgccataaacacggtttcgaggcaaatcaaccacctactaactgaattcacagagtcgtagtgatcttgaaatttcatcgcac |
16178592 |
T |
|
| Q |
207 |
tcaagatcgagggatgaacaaacaacataaatatatcattgtctgccaatgatacaaaaagaaaccacggtggataaaatactttaggcccgataaacga |
306 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
16178593 |
-----atcgagtgatgaacaaacaatataaatatatcattgtccaccaatgatacaaaaagaaaccacggtggataaaatactttaggtacgatgaacga |
16178687 |
T |
|
| Q |
307 |
ctactaccgtcaacacggggcatctacacaactaaccctttcgagcaacattaggataaaagcagtcatgttgaatcgagatatgcatccaacataacaa |
406 |
Q |
| |
|
|||||||| |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
16178688 |
ctactaccatcaacacggggcatctacgcaactaaccctttcaagcaacattaggataaaagcagtcatgttgaatcgagatatgcatccaacagaacaa |
16178787 |
T |
|
| Q |
407 |
caccctaaataaagaacccatatcattaattcagaaaatcagattcaagattttcataccaaatcacatagccgaaacaaagccaccacccatc |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16178788 |
caccctaaataaagaacccatatcattaattcagaaaatcagattcaagattttcataccaaatcacatagccgaaacaaagccaccacccatc |
16178881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 301 - 349
Target Start/End: Original strand, 25078733 - 25078781
Alignment:
| Q |
301 |
aaacgactactaccgtcaacacggggcatctacacaactaaccctttcg |
349 |
Q |
| |
|
||||||| |||||||||||||||| || ||||| || |||||||||||| |
|
|
| T |
25078733 |
aaacgacaactaccgtcaacacggagcttctacgcacctaaccctttcg |
25078781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 305 - 357
Target Start/End: Original strand, 50590185 - 50590237
Alignment:
| Q |
305 |
gactactaccgtcaacacggggcatctacacaactaaccctttcgagcaacat |
357 |
Q |
| |
|
||||||||||| |||||||| ||||||| || | |||||||||||||||||| |
|
|
| T |
50590185 |
gactactaccgccaacacggagcatctatgcaccaaaccctttcgagcaacat |
50590237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 138; Significance: 6e-72; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 177 - 497
Target Start/End: Original strand, 12583100 - 12583421
Alignment:
| Q |
177 |
agtcgtagtgatcttgaaatttca-tcgcagtcaagatcgagggatgaacaaacaacataaatatatcattgtctgccaatgatacaaaaagaaaccacg |
275 |
Q |
| |
|
||||| |||| |||||||| |||| |||||||| | ||| | |||||||||||| |||||||| |||||||||| |||| || ||| ||| ||||||| |
|
|
| T |
12583100 |
agtcgcagtggtcttgaaacttcagtcgcagtccaaatcaatggatgaacaaacgacataaatctatcattgtccaccaacaatgcaagaagcaaccacg |
12583199 |
T |
|
| Q |
276 |
gtggataaaatactttaggcccgataaacgactactaccgtcaacacggggcatctacacaactaaccctttcgagcaacattaggataaaagcagtcat |
375 |
Q |
| |
|
||||||||||| |||||| ||| || |||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||| || | | |
|
|
| T |
12583200 |
gtggataaaatcttttaggtatgatgaatgactactaccgtcaacacggagcatctacacacctagccctttcgagcaacattaggataaaaccaattgt |
12583299 |
T |
|
| Q |
376 |
gttgaatcgagatatgcatccaacataacaacaccctaaataaagaacccatatcattaattcagaaaatcagattcaagattttcataccaaatcacat |
475 |
Q |
| |
|
||| ||||||||||||||||||||| ||||||| | ||| ||||||||||||||| ||||| ||||||| |||||||| |||||||| || |||||||| |
|
|
| T |
12583300 |
gttaaatcgagatatgcatccaacagaacaacaacataactaaagaacccatatctttaatccagaaaaccagattcatgattttcagacaaaatcacag |
12583399 |
T |
|
| Q |
476 |
agccgaaacaaagccaccaccc |
497 |
Q |
| |
|
||||||||||||| ||||||| |
|
|
| T |
12583400 |
agccgaaacaaagtaaccaccc |
12583421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 126 - 500
Target Start/End: Original strand, 45892497 - 45892871
Alignment:
| Q |
126 |
ccattaacaccgtttcgaggtaaatcaaccacctactaactgaattcacagagtcgtagtgatcttgaaatttca-tcgcagtcaagatcgagggatgaa |
224 |
Q |
| |
|
|||| |||||| ||||||| ||| |||||| || ||| |||| |||| ||||| | || |||||||| |||| | |||||||| ||| ||||||||| |
|
|
| T |
45892497 |
ccataaacaccctttcgagtcaaaacaaccaattatgaaccgaatccacaaagtcgcaatggtcttgaaacttcagttgcagtcaatatcaagggatgaa |
45892596 |
T |
|
| Q |
225 |
caaacaacataaatatatcattgtctgccaatgatacaaaaagaaaccacggtggataaaatactttaggcccgataaacgactactaccgtcaacacgg |
324 |
Q |
| |
|
||||| |||||||| || ||||||| |||| ||| ||| ||| ||||||| ||||| |||| |||||| ||| ||||||||||||||||||||||| |
|
|
| T |
45892597 |
caaacgacataaatctaccattgtccaccaacgatgcaagaagcaaccacgacggatacaatattttaggtatgatgaacgactactaccgtcaacacgg |
45892696 |
T |
|
| Q |
325 |
ggcatctacacaactaaccctttcgagcaacattaggataaaagcagtcatgttgaatcgagatatgcatccaacataacaacaccctaaataaagaacc |
424 |
Q |
| |
|
||||||| || ||| |||||| ||||||||| ||||||||| ||| ||||||||||| |||||||||||||||| |||||| || || ||||||||| |
|
|
| T |
45892697 |
agcatctaggcacctagcccttttgagcaacatcaggataaaaccagacatgttgaatcaagatatgcatccaacagaacaacgccagaactaaagaacc |
45892796 |
T |
|
| Q |
425 |
catatcattaattcagaaaatcagattcaagattttcataccaaatcacatagccgaaacaaagccaccacccatc |
500 |
Q |
| |
|
|||| | ||||| ||||||| ||||||||||||||||| | |||||||||| |||||||||||| ||||| ||||| |
|
|
| T |
45892797 |
catacctttaatccagaaaaccagattcaagattttcaga-caaatcacattgccgaaacaaagtcaccatccatc |
45892871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 252 - 500
Target Start/End: Complemental strand, 48666030 - 48665782
Alignment:
| Q |
252 |
ccaatgatacaaaaagaaaccacggtggataaaatactttaggcccgataaacgactactaccgtcaacacggggcatctacacaactaaccctttcgag |
351 |
Q |
| |
|
|||| ||| ||| ||| |||||||||||||| |||| |||||| ||| ||||||||||||||||||||||| |||||||| || ||| | |||| ||| |
|
|
| T |
48666030 |
ccaacgatgcaagaagcaaccacggtggatacaatattttaggtatgatgaacgactactaccgtcaacacggagcatctacgcacctagctcttttgag |
48665931 |
T |
|
| Q |
352 |
caacattaggataaaagcagtcatgttgaatcgagatatgcatccaacataacaacaccctaaataaagaacccatatcattaattcagaaaatcagatt |
451 |
Q |
| |
|
|||||| ||||||||| |||||||||||||||||| ||||||||||||| ||||| || || ||||||||||||| | ||| ||||||| ||| | |
|
|
| T |
48665930 |
caacatcaggataaaaccagtcatgttgaatcgagctatgcatccaacagaacaaagccagaactaaagaacccatactttcaatccagaaaacaagaat |
48665831 |
T |
|
| Q |
452 |
caagattttcataccaaatcacatagccgaaacaaagccaccacccatc |
500 |
Q |
| |
|
||||||||||| || |||| ||| || ||||||||| ||||||||||| |
|
|
| T |
48665830 |
caagattttcagacaaaatgacagagtggaaacaaagtcaccacccatc |
48665782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 315 - 500
Target Start/End: Complemental strand, 21801477 - 21801292
Alignment:
| Q |
315 |
gtcaacacggggcatctacacaactaaccctttcgagcaacattaggataaaagcagtcatgttgaatcgagatatgcatccaacataacaacaccctaa |
414 |
Q |
| |
|
|||||||||| |||||||| || ||| | | |||||||||||| ||||||||| |||||||||| ||||||||||||||||||| | ||||||||| || |
|
|
| T |
21801477 |
gtcaacacggagcatctacgcacctagctcattcgagcaacatcaggataaaaccagtcatgttaaatcgagatatgcatccaatagaacaacaccagaa |
21801378 |
T |
|
| Q |
415 |
ataaagaacccatatcattaattcagaaaatcagattcaagattttcataccaaatcacatagccgaaacaaagccaccacccatc |
500 |
Q |
| |
|
||||||||| | || | ||| ||||||| |||||||||||||||| || |||||||| |||||||| |||| || |||||||| |
|
|
| T |
21801377 |
ctaaagaacctgtgtcttcaatccagaaaacaagattcaagattttcagacaaaatcacagagccgaaataaagtcatcacccatc |
21801292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 297 - 353
Target Start/End: Complemental strand, 9734044 - 9733988
Alignment:
| Q |
297 |
cgataaacgactactaccgtcaacacggggcatctacacaactaaccctttcgagca |
353 |
Q |
| |
|
|||||||| || ||||||||||||||| || ||||| || |||||||||||||||| |
|
|
| T |
9734044 |
cgataaacaacagctaccgtcaacacggagcgtctacgcacctaaccctttcgagca |
9733988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 111; Significance: 8e-56; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 302 - 500
Target Start/End: Complemental strand, 23661450 - 23661252
Alignment:
| Q |
302 |
aacgactactaccgtcaacacggggcatctacacaactaaccctttcgagcaacattaggataaaagcagtcatgttgaatcgagatatgcatccaacat |
401 |
Q |
| |
|
||||||||||||||||||||||| |||||||| || ||| |||||||||||||||| ||||||||| ||||||||||||||||||||||| |||| ||| |
|
|
| T |
23661450 |
aacgactactaccgtcaacacggagcatctacgcacctagccctttcgagcaacatcaggataaaaccagtcatgttgaatcgagatatgaatcctacag |
23661351 |
T |
|
| Q |
402 |
aacaacaccctaaataaagaacccatatcattaattcagaaaatcagattcaagattttcataccaaatcacatagccgaaacaaagccaccacccatc |
500 |
Q |
| |
|
||||||||| || |||||||||||||| | ||| ||||||| ||||||||| ||||||| || ||||||||||||||||||||| ||||||||||| |
|
|
| T |
23661350 |
aacaacaccagaactaaagaacccatatattcaatccagaaaaccagattcaatattttcagacaaaatcacatagccgaaacaaattcaccacccatc |
23661252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0219 (Bit Score: 101; Significance: 8e-50; HSPs: 1)
Name: scaffold0219
Description:
Target: scaffold0219; HSP #1
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 216 - 500
Target Start/End: Original strand, 5837 - 6121
Alignment:
| Q |
216 |
agggatgaacaaacaacataaatatatcattgtctgccaatgatacaaaaagaaaccacggtggataaaatactttaggcccgataaacgactactaccg |
315 |
Q |
| |
|
|||||||||||||| |||||||| || || |||| |||||||| ||| ||| ||||||| |||| |||| |||||| ||| ||||||| ||||| |
|
|
| T |
5837 |
agggatgaacaaacgacataaatctaccactgtccaccaatgatgcaagaagcaaccacgacagatacaatattttaggtatgatgaacgacttctacca |
5936 |
T |
|
| Q |
316 |
tcaacacggggcatctacacaactaaccctttcgagcaacattaggataaaagcagtcatgttgaatcgagatatgcatccaacataacaacaccctaaa |
415 |
Q |
| |
|
|| || || |||||| || ||| |||||||||||||||| |||||| || ||||||||||||||||||||||||||||||||||||| |||| || |
|
|
| T |
5937 |
tcttcatggatcatctatgcacctagccctttcgagcaacatcaggatacaaccagtcatgttgaatcgagatatgcatccaacataacagcaccagaat |
6036 |
T |
|
| Q |
416 |
taaagaacccatatcattaattcagaaaatcagattcaagattttcataccaaatcacatagccgaaacaaagccaccacccatc |
500 |
Q |
| |
|
|||||||||||| | | ||| ||||||| ||||||||||||||||| || |||||||| ||||||||||||| ||||||||||| |
|
|
| T |
6037 |
gaaagaacccataccttcaatccagaaaaccagattcaagattttcagacaaaatcacagagccgaaacaaagtcaccacccatc |
6121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 96; Significance: 7e-47; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 204 - 500
Target Start/End: Complemental strand, 26470500 - 26470203
Alignment:
| Q |
204 |
cagtcaagatcgagggatgaacaaacaacataaatatatcattgtctgccaatgatacaaaaagaaaccacggtggataaaatactttaggcccgataaa |
303 |
Q |
| |
|
||||| ||||| |||||||||||||| |||||||| || || |||| |||| ||| ||| ||| ||||||| |||||||||| |||| | ||| || |
|
|
| T |
26470500 |
cagtctagatcaagggatgaacaaacgacataaatctaccactgtccaccaacgatgcaagaagcaaccacgtcggataaaatattttacgtatgatgaa |
26470401 |
T |
|
| Q |
304 |
cgactactaccgtcaacacggggcatctacacaactaaccctttcgagcaacattaggataaaagcagtcatgttgaatcgagatatgcatccaacataa |
403 |
Q |
| |
|
||| ||| |||||||||| || |||||||| || ||| |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| || |
|
|
| T |
26470400 |
cga-tacaaccgtcaacatggagcatctacgcacctagccctttcgaggaacattaggataaaaccagtcatgttgaatcgagatatgcatccaacaaaa |
26470302 |
T |
|
| Q |
404 |
caacaccctaaataaagaacccatatcattaattcagaaaatcagattcaagattt--tcataccaaatcacatagccgaaacaaagccaccacccatc |
500 |
Q |
| |
|
|| || || ||||||||||||||| | ||| ||||||| |||||||||||||| | | ||||||||||| |||||||||| ||||||||||| |
|
|
| T |
26470301 |
gaatgccaaaactaaagaacccatatcttcaatccagaaaaccagattcaagatttaaaaaaaaaaaatcacatagtcgaaacaaagtcaccacccatc |
26470203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 204 - 500
Target Start/End: Complemental strand, 26546940 - 26546643
Alignment:
| Q |
204 |
cagtcaagatcgagggatgaacaaacaacataaatatatcattgtctgccaatgatacaaaaagaaaccacggtggataaaatactttaggcccgataaa |
303 |
Q |
| |
|
||||| ||||| |||||||||||||| |||||||| || || |||| |||| ||| ||| ||| ||||||| |||||||||| |||| | ||| || |
|
|
| T |
26546940 |
cagtctagatcaagggatgaacaaacgacataaatctaccactgtccaccaacgatgcaagaagcaaccacgtcggataaaatattttacgtatgatgaa |
26546841 |
T |
|
| Q |
304 |
cgactactaccgtcaacacggggcatctacacaactaaccctttcgagcaacattaggataaaagcagtcatgttgaatcgagatatgcatccaacataa |
403 |
Q |
| |
|
||| ||| |||||||||| || |||||||| || ||| |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| || |
|
|
| T |
26546840 |
cga-tacaaccgtcaacatggagcatctacgcacctagccctttcgaggaacattaggataaaaccagtcatgttgaatcgagatatgcatccaacaaaa |
26546742 |
T |
|
| Q |
404 |
caacaccctaaataaagaacccatatcattaattcagaaaatcagattcaagattt--tcataccaaatcacatagccgaaacaaagccaccacccatc |
500 |
Q |
| |
|
|| || || ||||||||||||||| | ||| ||||||| |||||||||||||| | | ||||||||||| |||||||||| ||||||||||| |
|
|
| T |
26546741 |
gaatgccaaaactaaagaacccatatcttcaatccagaaaaccagattcaagatttaaaaaaaaaaaatcacatagtcgaaacaaagtcaccacccatc |
26546643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 126 - 500
Target Start/End: Complemental strand, 23773751 - 23773375
Alignment:
| Q |
126 |
ccattaacaccgtttcgaggtaaatcaaccacctactaactgaattcacagagtcgtagtgatcttgaaatttcat-cgcagtcaagatcgagggatgaa |
224 |
Q |
| |
|
|||| ||||||||||||| ||| |||||| ||| ||| |||| |||| | ||| |||| |||||||| |||| ||||||| ||||| ||||||||| |
|
|
| T |
23773751 |
ccataaacaccgtttcgattcaaagcaaccaattacgaaccgaatccacaaaatcgcagtggtcttgaaacttcaggcgcagtccagatcaagggatgaa |
23773652 |
T |
|
| Q |
225 |
caaacaacataaatatatcattgtctgccaatgatacaaaaagaaaccacggtggataaaatactttaggcccgataaacgactactaccgtcaacacgg |
324 |
Q |
| |
|
||||| |||| ||| || || |||| |||||||| ||| ||| ||||||| |||||||||| |||||| ||| ||||| ||||||||||||||| | |
|
|
| T |
23773651 |
caaacgacattaatctaccactgtccaccaatgatgcaagaagcaaccacgacggataaaatattttaggaatgattaacga-tactaccgtcaacacag |
23773553 |
T |
|
| Q |
325 |
ggcatctacacaactaaccctttcgagcaacattaggataaaagcagtcatgttgaatcgagatatgcatccaacataacaacaccctaaat-aaagaac |
423 |
Q |
| |
|
||||||||||| ||| || |||| | ||||||| ||||||| |||||||||||||||||||||||||||||||| ||||| || || | ||| ||| |
|
|
| T |
23773552 |
agcatctacacacctagccgtttcaaagaacattatgataaaaccagtcatgttgaatcgagatatgcatccaacaaaacaatgccagaactaaaaaaac |
23773453 |
T |
|
| Q |
424 |
ccatatcat-taattcagaaaatcagattcaagattttcataccaaatcacatagccgaaacaaagccaccacccatc |
500 |
Q |
| |
|
||||||| | ||| ||||||| ||||||||||||||| | || |||||||| |||||||||||| |||||| |||| |
|
|
| T |
23773452 |
ccatatcttcaaatccagaaaaccagattcaagatttttagacaaaatcacagagccgaaacaaattcaccactcatc |
23773375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 280 - 499
Target Start/End: Complemental strand, 12120079 - 12119861
Alignment:
| Q |
280 |
ataaaatactttaggcccgataaacgactactaccgtcaacacggggcatctacacaactaaccctttcgagcaacattaggataaaagcagtcatgttg |
379 |
Q |
| |
|
||||||| ||||||| ||| || |||||||||||||||||| | |||||||||| ||| |||||||||||||||| ||||||||| | |||||||| |
|
|
| T |
12120079 |
ataaaatcctttaggtatgatgaatgactactaccgtcaacacagaacatctacacacctagccctttcgagcaacatcaggataaaacctgtcatgttc |
12119980 |
T |
|
| Q |
380 |
aatcgagatatgcatccaacataacaacaccctaaataaagaacccatatcattaattcagaaaatcagattcaagattttcataccaaatcacatagcc |
479 |
Q |
| |
|
||||||||||||||| ||||| |||||| || || ||||||||||||||| | ||| || || |||||||||||||||| ||||||||| | | || |
|
|
| T |
12119979 |
aatcgagatatgcattcaacaaaacaacgccaaaactaaagaacccatatcgtcaatccattgaaccagattcaagattttctgaccaaatcaaaga-cc |
12119881 |
T |
|
| Q |
480 |
gaaacaaagccaccacccat |
499 |
Q |
| |
|
| |||||||||||||||||| |
|
|
| T |
12119880 |
ggaacaaagccaccacccat |
12119861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0527 (Bit Score: 93; Significance: 4e-45; HSPs: 4)
Name: scaffold0527
Description:
Target: scaffold0527; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 308 - 500
Target Start/End: Original strand, 3320 - 3512
Alignment:
| Q |
308 |
tactaccgtcaacacggggcatctacacaactaaccctttcgagcaacattaggataaaagcagtcatgttgaatcgagatatgcatccaacataacaac |
407 |
Q |
| |
|
|||||| |||| ||||| ||||||| || ||| |||||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
3320 |
tactacagtcatcacggagcatctatgcacctagccctttcgagcaacatcaggataaaaccagtcatgttgaatagagatatgcatccaacataacaac |
3419 |
T |
|
| Q |
408 |
accctaaataaagaacccatatcattaattcagaaaatcagattcaagattttcataccaaatcacatagccgaaacaaagccaccacccatc |
500 |
Q |
| |
|
|| || ||| ||||||||| | | ||| ||||||| ||||||||||||||| | || ||||| |||||||||||||||| ||||||||||| |
|
|
| T |
3420 |
acaagaattaaggaacccataccttcaatccagaaaaccagattcaagatttttagacaaaatctcatagccgaaacaaagtcaccacccatc |
3512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0527; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 308 - 500
Target Start/End: Original strand, 11383 - 11575
Alignment:
| Q |
308 |
tactaccgtcaacacggggcatctacacaactaaccctttcgagcaacattaggataaaagcagtcatgttgaatcgagatatgcatccaacataacaac |
407 |
Q |
| |
|
|||||| |||| ||||| ||||||| || ||| |||||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
11383 |
tactacagtcatcacggagcatctatgcacctagccctttcgagcaacatcaggataaaaccagtcatgttgaatagagatatgcatccaacataacaac |
11482 |
T |
|
| Q |
408 |
accctaaataaagaacccatatcattaattcagaaaatcagattcaagattttcataccaaatcacatagccgaaacaaagccaccacccatc |
500 |
Q |
| |
|
|| || ||| ||||||||| | | ||| ||||||| ||||||||||||||| | || ||||| |||||||||||||||| ||||||||||| |
|
|
| T |
11483 |
acaagaattaaggaacccataccttcaatccagaaaaccagattcaagatttttagacaaaatctcatagccgaaacaaagtcaccacccatc |
11575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0527; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 138 - 263
Target Start/End: Original strand, 3167 - 3293
Alignment:
| Q |
138 |
tttcgaggtaaatcaaccacctactaactgaattcacagagtcgtagtgatcttgaaatttca-tcgcagtcaagatcgagggatgaacaaacaacataa |
236 |
Q |
| |
|
||||||| ||| |||||| ||| ||| |||| |||| ||||| |||| |||||||| |||| |||||||| ||||| |||||||||||||| |||||| |
|
|
| T |
3167 |
tttcgagtcaaaacaaccaattacgaaccgaatccacaaagtcgcagtggtcttgaaacttcagtcgcagtccagatcaagggatgaacaaacgacataa |
3266 |
T |
|
| Q |
237 |
atatatcattgtctgccaatgatacaa |
263 |
Q |
| |
|
|| || ||||||| |||| ||||||| |
|
|
| T |
3267 |
atctaccattgtccaccaacgatacaa |
3293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0527; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 138 - 263
Target Start/End: Original strand, 11230 - 11356
Alignment:
| Q |
138 |
tttcgaggtaaatcaaccacctactaactgaattcacagagtcgtagtgatcttgaaatttca-tcgcagtcaagatcgagggatgaacaaacaacataa |
236 |
Q |
| |
|
||||||| ||| |||||| ||| ||| |||| |||| ||||| |||| |||||||| |||| |||||||| ||||| |||||||||||||| |||||| |
|
|
| T |
11230 |
tttcgagtcaaaacaaccaattacgaaccgaatccacaaagtcgcagtggtcttgaaacttcagtcgcagtccagatcaagggatgaacaaacgacataa |
11329 |
T |
|
| Q |
237 |
atatatcattgtctgccaatgatacaa |
263 |
Q |
| |
|
|| || ||||||| |||| ||||||| |
|
|
| T |
11330 |
atctaccattgtccaccaacgatacaa |
11356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 88; Significance: 4e-42; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 278 - 500
Target Start/End: Original strand, 32538007 - 32538230
Alignment:
| Q |
278 |
ggataaaatactttaggcccgataaacgactactaccgtcaacacggggcatctacacaactaaccctttcgagcaacattaggataaaagcagtcatgt |
377 |
Q |
| |
|
||||||||| ||||||| |||| || ||| ||||||||||||||| ||||||| || ||| |||||||||||||||| | ||||||| || | |||| |
|
|
| T |
32538007 |
ggataaaatcctttaggtacgatgaatgacccctaccgtcaacacggagcatctatgcacctagccctttcgagcaacatcaagataaaaccaattatgt |
32538106 |
T |
|
| Q |
378 |
tgaatcgagatatgcatccaacataacaacaccctaaataaagaacccatatcattaattcagaaaatcagattcaagattttcatacc-aaatcacata |
476 |
Q |
| |
|
|||||| |||||||||||||||| |||||| || ||| |||||||||| |||| | ||||| ||||||| |||||||||||||| ||| |||||||| | |
|
|
| T |
32538107 |
tgaatctagatatgcatccaacagaacaaccccataactaaagaacccgtatcttcaattcgaaaaatcaaattcaagattttcagaccaaaatcacaga |
32538206 |
T |
|
| Q |
477 |
gccgaaacaaagccaccacccatc |
500 |
Q |
| |
|
|||| |||||| |||||||||||| |
|
|
| T |
32538207 |
gccggaacaaatccaccacccatc |
32538230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 362
Target Start/End: Complemental strand, 1954139 - 1954086
Alignment:
| Q |
309 |
actaccgtcaacacggggcatctacacaactaaccctttcgagcaacattagga |
362 |
Q |
| |
|
|||||||||||||| | || ||||| || ||| ||||||||||||||||||||| |
|
|
| T |
1954139 |
actaccgtcaacacagagcgtctacgcacctagccctttcgagcaacattagga |
1954086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 355
Target Start/End: Complemental strand, 35247529 - 35247476
Alignment:
| Q |
302 |
aacgactactaccgtcaacacggggcatctacacaactaaccctttcgagcaac |
355 |
Q |
| |
|
|||||| |||||||||||||||| |||||||| || ||| | |||||||||||| |
|
|
| T |
35247529 |
aacgacaactaccgtcaacacggagcatctacgcacctagctctttcgagcaac |
35247476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 81; Significance: 6e-38; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 252 - 500
Target Start/End: Original strand, 5999857 - 6000102
Alignment:
| Q |
252 |
ccaatgatacaaaaagaaaccacggtggataaaatactttaggcccgataaacgactactaccgtcaacacggggcatctacacaactaaccctttcgag |
351 |
Q |
| |
|
|||| ||| ||| ||| ||||||| ||||||||||| |||||| ||| ||||| ||||||||||||||| | |||||||| || ||| |||||||||| |
|
|
| T |
5999857 |
ccaacgatgcaagaagcaaccacgatggataaaatattttaggtatgatgaacga-tactaccgtcaacacagagcatctacgcacctagccctttcgag |
5999955 |
T |
|
| Q |
352 |
caacattaggataaaagcagtcatgttgaatcgagatatgcatccaacataacaacaccctaaataaagaacccatatcattaattcagaaaatcagatt |
451 |
Q |
| |
|
||| ||| ||||||| ||||||||||||||||||||||||||||| || || || || || ||||||||||||||| | ||| || |||| |||||| |
|
|
| T |
5999956 |
gaaccttaagataaaaccagtcatgttgaatcgagatatgcatccatca-aagaa-gccagaactaaagaacccatatcttcaatccaaaaaaccagatt |
6000053 |
T |
|
| Q |
452 |
caagattttcataccaaatcacatagccgaaacaaagccaccacccatc |
500 |
Q |
| |
|
| ||||||| | || |||||||| ||||||||||||| ||||||||||| |
|
|
| T |
6000054 |
cgagatttttagacaaaatcacagagccgaaacaaagtcaccacccatc |
6000102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 309 - 357
Target Start/End: Complemental strand, 23780014 - 23779966
Alignment:
| Q |
309 |
actaccgtcaacacggggcatctacacaactaaccctttcgagcaacat |
357 |
Q |
| |
|
|||||||||||||||| || ||||| || |||||||||||||||||||| |
|
|
| T |
23780014 |
actaccgtcaacacggagcgtctacgcacctaaccctttcgagcaacat |
23779966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 81; Significance: 6e-38; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 201 - 500
Target Start/End: Complemental strand, 36658658 - 36658363
Alignment:
| Q |
201 |
tcgcagtcaagatcgagggatgaacaaacaacataaatatatcattgtctgccaatgatacaaaaagaaaccacggtggataaaatactttaggcccgat |
300 |
Q |
| |
|
|||||||| ||||| ||||| |||||||| |||||||| || ||||||| ||| ||| ||| |||||||||| |||||| |||| |||||| ||| |
|
|
| T |
36658658 |
tcgcagtccagatcaagggaagaacaaacgacataaatctaccattgtccatcaacgatgcaagaagaaaccacaatggatacaatattttaggtatgat |
36658559 |
T |
|
| Q |
301 |
aaacgactactaccgtcaac-acggggcatctacacaactaaccctttcgagcaacattaggataaaagcagtcatgttgaatcgagatatgcatccaac |
399 |
Q |
| |
|
||||||||||||| ||||| || | |||||||| || ||| | ||||||||||||| ||||||||| |||||||||||||||||| ||||||||| |
|
|
| T |
36658558 |
gaacgactactaccatcaaccacagagcatctacgcacctagctgtttcgagcaacatcaggataaaaccagtcatgttgaatcgagctatgcatcc--- |
36658462 |
T |
|
| Q |
400 |
ataacaacaccctaaataaagaacccatatcattaattcagaaaatcagattcaagattttcataccaaatcacatagccgaaacaaagccaccacccat |
499 |
Q |
| |
|
||||| | || ||||||||||||| | | ||| |||||||||||| | |||||||||| || |||||||| || |||||||||| |||||||||| |
|
|
| T |
36658461 |
--aacaatgctagaactaaagaacccataccttcaatccagaaaatcagacttaagattttcaaacaaaatcacagagtcgaaacaaagtcaccacccat |
36658364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 269 - 479
Target Start/End: Complemental strand, 31266997 - 31266786
Alignment:
| Q |
269 |
aaccacggtggataaaatactttaggcccgataaacgactactaccgtcaacacggggcatctacacaactaaccctttcgagcaacattaggataaaag |
368 |
Q |
| |
|
||||| || ||| ||||| ||||||| |||| |||||||||||| ||||||||| |||||||| || ||| ||||||||| |||||| | ||||||| |
|
|
| T |
31266997 |
aaccatggaggaaaaaatcctttaggtacgatgaacgactactactatcaacacggagcatctacgcacctagccctttcgaacaacatcaagataaaac |
31266898 |
T |
|
| Q |
369 |
cagtcatgttgaatcgagatatgcatccaacataacaacaccctaaataaagaaccc-atatcattaattcagaaaatcagattcaagattttcatacca |
467 |
Q |
| |
|
|| ||||||||| ||||||||||||||||| | |||||| || || |||||||||| | || | ||| || |||| ||| ||||||||||||| |||| |
|
|
| T |
31266897 |
caatcatgttgagtcgagatatgcatccaatagaacaaccccaaaactaaagaaccccaggtcttcaatccaaaaaaccagcttcaagattttcagacca |
31266798 |
T |
|
| Q |
468 |
aatcacatagcc |
479 |
Q |
| |
|
||||||| |||| |
|
|
| T |
31266797 |
aatcacaaagcc |
31266786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 283 - 500
Target Start/End: Complemental strand, 29463956 - 29463740
Alignment:
| Q |
283 |
aaatactttaggcccgataaacgactactaccgtcaacacggggcatctacacaactaaccctttcgagcaacattaggataaaagcagtcatgttgaat |
382 |
Q |
| |
|
|||| ||||||| |||| ||||||| |||| ||||||| |||| |||||| || ||| | ||||||| ||||||||||||||| |||||||||||||| |
|
|
| T |
29463956 |
aaatcctttaggaacgatgaacgactgctactgtcaacatggggaatctacgcacctagctatttcgagtaacattaggataaaatcagtcatgttgaat |
29463857 |
T |
|
| Q |
383 |
cgagatatgcatccaacataacaacaccctaaataaagaacccatatcattaattcagaaaatcagattcaagattttcataccaaatcacatagccgaa |
482 |
Q |
| |
|
|||||||||||||||||| ||||| | || ||||||||||| ||| | ||| ||| ||| || ||||||||| || | | ||||||| | || |||| |
|
|
| T |
29463856 |
cgagatatgcatccaacaaaacaatgctaaaactaaagaacccagatcttcaatccag-aaaccaaattcaagatatttagatcaaatcagagagacgaa |
29463758 |
T |
|
| Q |
483 |
acaaagccaccacccatc |
500 |
Q |
| |
|
||||||| ||||||||| |
|
|
| T |
29463757 |
acaaagctgccacccatc |
29463740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 345 - 430
Target Start/End: Complemental strand, 923856 - 923771
Alignment:
| Q |
345 |
tttcgagcaacattaggataaaagcagtcatgttgaatcgagatatgcatccaacataacaacaccctaaataaagaacccatatc |
430 |
Q |
| |
|
|||||| |||| | ||||||||| || |||||||||||||| |||||||||||||| |||||| || || ||||||||||||||| |
|
|
| T |
923856 |
tttcgatcaacttcaggataaaaccaatcatgttgaatcgaaatatgcatccaacaaaacaacgccagaactaaagaacccatatc |
923771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 210 - 249
Target Start/End: Complemental strand, 923943 - 923904
Alignment:
| Q |
210 |
agatcgagggatgaacaaacaacataaatatatcattgtc |
249 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
923943 |
agatcgagggatgaacaaacaacataaatctatcactgtc |
923904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University