View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2859-Insertion-13 (Length: 464)
Name: NF2859-Insertion-13
Description: NF2859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2859-Insertion-13 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 8 - 464
Target Start/End: Original strand, 5273320 - 5273770
Alignment:
| Q |
8 |
gaaactacgatctcttttctttgcctcaattctacagctactaattctcaccctctactattccactaccacctcagcacaaatctcaccagttcaatct |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5273320 |
gaaactacgatctcttttctttgcctcaattctacagctactaattctcaccctctactattccactaccacctcagcacaaatctcaccagttcaatct |
5273419 |
T |
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| Q |
108 |
ccacaagcctctacaccagcaccaggtttcaacacagtcccccttgtaccagtaaccccgagtggggcccccaccccaaatattctcccaaaatcaccat |
207 |
Q |
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| T |
5273420 |
ccacaagcctctacaccagcaccaggtttcaacacagtcccccttgtaccagtaaccccgagtggggcccccacccctaatattctcccaaaatcaccat |
5273519 |
T |
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| Q |
208 |
ccatagacattatccaaatcctcnnnnnnnnnnnnngattctcagttctcattcgtcttctcaaaacaactcagttaataaaccaactcaactcacaact |
307 |
Q |
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| T |
5273520 |
ccatagacattatccaaatcctcaaaaaagcaaaaagattctcagttctcattcgtcttctcaaaacaactcagttaataaaccaactcaactcacaact |
5273619 |
T |
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| Q |
308 |
agttannnnnnnnnnnnnnnnnnnngattctagcagtggtggcttaaccctttttgcaccagaagacaatgccttttcaaaactcaaaccaggtttcctt |
407 |
Q |
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| T |
5273620 |
agtta------catcatcatcatcagattctagcagtggtggcttaaccctttttgcaccagaagacaatgccttttcaaaactcaaaccaggtttcctt |
5273713 |
T |
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| Q |
408 |
aattccctcagtgacagacacaaagtagaactgttacaattccatacactttcctca |
464 |
Q |
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| T |
5273714 |
aattccctcagtgacagacacaaagtagaactgttacaattccacacactttcctca |
5273770 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 345 - 445
Target Start/End: Original strand, 36151143 - 36151243
Alignment:
| Q |
345 |
ggtggcttaaccctttttgcaccagaagacaatgccttttcaaaactcaaaccaggtttccttaattccctcagtgacagacacaaagtagaactgttac |
444 |
Q |
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| T |
36151143 |
ggtgggttaaccatttttgcaccagaagattctgcattctccaaactcaaagcagggttcctcaactccctcactgatagacaaaaagtcgaactcttac |
36151242 |
T |
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| Q |
445 |
a |
445 |
Q |
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| T |
36151243 |
a |
36151243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 351 - 445
Target Start/End: Original strand, 36154535 - 36154629
Alignment:
| Q |
351 |
ttaaccctttttgcaccagaagacaatgccttttcaaaactcaaaccaggtttccttaattccctcagtgacagacacaaagtagaactgttaca |
445 |
Q |
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|||||| |||||||||||||||| ||| || || ||||||||| |||| ||||| || ||||||| ||| ||||| ||||| ||||| ||||| |
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| T |
36154535 |
ttaaccatttttgcaccagaagattctgcattctccaaactcaaagcagggttcctcaactccctcactgatagacaaaaagtcgaactcttaca |
36154629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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