View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2859-Insertion-15 (Length: 365)
Name: NF2859-Insertion-15
Description: NF2859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2859-Insertion-15 |
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Alignment Details
Target: chr7 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 8 - 267
Target Start/End: Original strand, 11464717 - 11464976
Alignment:
| Q |
8 |
agatcagcagcgttgccatgagagtaaagaagagttgaagtagccattggatgacgaacataaacagccacaatctccgttcctcgacgtgtcgaaagtt |
107 |
Q |
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| T |
11464717 |
agatcagcagcgttgccatgagagtaaagaagagttgaagtagccattggatgacgaacataaacagccacaatctccgttcctcgacgcgtcgaaagtt |
11464816 |
T |
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| Q |
108 |
tcataatttcaacgttttcacggtgaggaaatggtgttaacagaagtagacctgttaaatcatctttgattagcttgtatgatggtgggtttggtggaaa |
207 |
Q |
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| T |
11464817 |
tcataatctcaacgttttcacggtgaggataaggtgttagtagaagaagacctgttaaatcatctttgattagtttgtatgatggtgggtttggtggaaa |
11464916 |
T |
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| Q |
208 |
gaatgcaaattttgatgccattgatgatgttaccccacccatcacataaacataaacaat |
267 |
Q |
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| T |
11464917 |
gaatgcaaattttgatgccattgatgatgttaccccacccatcacataaacataaacaat |
11464976 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 335 - 365
Target Start/End: Original strand, 11465045 - 11465075
Alignment:
| Q |
335 |
ggtgaattgagttagatcttgtaatgtgttt |
365 |
Q |
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| T |
11465045 |
ggtgaattgagttagatcttgtaatgtgttt |
11465075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 170 - 234
Target Start/End: Original strand, 34325455 - 34325519
Alignment:
| Q |
170 |
tctttgattagcttgtatgatggtgggtttggtggaaagaatgcaaattttgatgccattgatga |
234 |
Q |
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| T |
34325455 |
tctttgatgagtttgtatgatggtgggtttggtggaaagaatgctaatttcgctgccattgatga |
34325519 |
T |
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