View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2859-Insertion-2 (Length: 967)

Name: NF2859-Insertion-2
Description: NF2859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2859-Insertion-2
NF2859-Insertion-2
[»] chr4 (13 HSPs)
chr4 (7-645)||(32224703-32225330)
chr4 (674-967)||(32225355-32225649)
chr4 (154-453)||(32229703-32229983)
chr4 (901-950)||(9199866-9199915)
chr4 (901-950)||(9201405-9201454)
chr4 (901-940)||(23976706-23976745)
chr4 (900-938)||(44376078-44376116)
chr4 (900-941)||(17558824-17558865)
chr4 (373-428)||(32210810-32210865)
chr4 (900-938)||(11238185-11238223)
chr4 (900-938)||(35760773-35760811)
chr4 (901-938)||(19745250-19745287)
chr4 (901-938)||(19794519-19794556)
[»] chr5 (8 HSPs)
chr5 (899-951)||(16349713-16349765)
chr5 (901-951)||(4082578-4082628)
chr5 (901-948)||(40951477-40951524)
chr5 (901-951)||(16222695-16222745)
chr5 (901-938)||(25099236-25099273)
chr5 (901-938)||(25158326-25158363)
chr5 (900-938)||(30096275-30096313)
chr5 (901-938)||(30088702-30088739)
[»] chr8 (6 HSPs)
chr8 (901-951)||(42308123-42308173)
chr8 (899-951)||(16367866-16367918)
chr8 (901-954)||(26960204-26960257)
chr8 (900-938)||(405353-405391)
chr8 (898-943)||(771644-771689)
chr8 (901-938)||(17695625-17695662)
[»] chr1 (12 HSPs)
chr1 (901-954)||(51387129-51387182)
chr1 (901-951)||(47250306-47250356)
chr1 (899-938)||(28947452-28947491)
chr1 (901-951)||(41323362-41323412)
chr1 (900-951)||(27840306-27840357)
chr1 (900-938)||(29387886-29387924)
chr1 (901-951)||(38236310-38236360)
chr1 (904-954)||(40978754-40978804)
chr1 (901-943)||(50293657-50293699)
chr1 (899-948)||(6923521-6923570)
chr1 (900-961)||(33815826-33815887)
chr1 (900-961)||(33875296-33875357)
[»] chr7 (4 HSPs)
chr7 (898-938)||(31097904-31097944)
chr7 (900-938)||(32661061-32661099)
chr7 (903-941)||(2974181-2974219)
chr7 (903-940)||(2976710-2976747)
[»] chr2 (2 HSPs)
chr2 (901-943)||(22136279-22136321)
chr2 (900-948)||(4843570-4843618)
[»] scaffold0896 (1 HSPs)
scaffold0896 (901-938)||(1109-1146)
[»] chr6 (3 HSPs)
chr6 (901-938)||(8657064-8657101)
chr6 (897-938)||(24570750-24570791)
chr6 (901-938)||(33289070-33289107)
[»] chr3 (4 HSPs)
chr3 (897-938)||(37099736-37099777)
chr3 (901-940)||(44708227-44708266)
chr3 (901-948)||(53693211-53693258)
chr3 (900-938)||(5561552-5561590)


Alignment Details
Target: chr4 (Bit Score: 499; Significance: 0; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 7 - 645
Target Start/End: Original strand, 32224703 - 32225330
Alignment:
Q  7 atatgctaccaaggctgctgattttgtgcagtccaaaccagaagagccagccaaacctgaaggtgtgattgctggtgctaaaaatgctgttggaggctta 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32224703 atatgctaccaaggctgctgattttgtgcagtccaaaccagaagagccagccaaacctgaaggtgtgattgctggtgctaaaaatgctgttggaggctta 32224802  T
Q  107 tttaagaaatgaaacatcactgatttcactttagcatcttgtgattaattaattaat--------aaggatactaaacttgtcatccattcaagtatgtg 198  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||        |||||||||||||||||||||| ||||||||||||    
T  32224803 tttaagaaatgaaacatcactgatttcactttagcatcctgtgattaattaattaattaattaataaggatactaaacttgtcatcccttcaagtatgtg 32224902  T
Q  199 tataagttagcactgtgtatcttatcatataaactataggataggatatactaagttagcactgtctgataatggatccaatatatgtaaggtaactgag 298  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||                |||||||||||  |||||||||| |||    
T  32224903 tataagttagcactgtgtatcttatcatataaactataggataggatatactaagtt----------------ggatccaatat--gtaaggtaacagag 32224984  T
Q  299 ctctgctcttcactttactgatcctgcctctgattgtttatgtttttcctaattctgttgcatatttattattattcaattctgtttcctttctcttatt 398  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||    
T  32224985 ctctgctcttcactttactgatcctgcctctgattgtttatgtttttcctaattctgttgcatatttattatt---caattctgtttcctttctcttatt 32225081  T
Q  399 ttgttctcttttggctacttcaaattttgtgctttttctat--gtgttaattaaatttatataaattactcctcctaaataaaaatagataatgtaactg 496  Q
    |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32225082 ttgttctcttttggctacttcaaattttgtgctttttctatatgtgttaattaaatttatataaattactcctcctaaataaaaatagataatgtaactg 32225181  T
Q  497 tacaacaaaattatataaagttatattaaatgaataaaactttcaattatcataagaagtgtatatattaattgggagatctcacaagtaaaatctgatc 596  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||    
T  32225182 tacaaaaaaattatataaagttatattaaatgaataaaactttcaattatcataagaagcgtatatattaattgggagatctcgcaggtaaaatctgatc 32225281  T
Q  597 aatgtttattttagtcaagatttaaatttgggttcctaaatgctttgtt 645  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||    
T  32225282 aatgattattttagtcaagatttaaatttgggttcctaaatgctttgtt 32225330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 674 - 967
Target Start/End: Original strand, 32225355 - 32225649
Alignment:
Q  674 cgaaaatatattgaatttgcaaagaaaattatacaggaatgaaaaacaagtgagtaataagttgcgttgttaaccctttttggaagataaaa-gggttct 772  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |||| |||||||    
T  32225355 cgaaaatatattgaatttgcaaagaaaattatacaggaatgaaaaacaagtgagtaataagttgtgtcgttaaccctttttggaagacaaaaagggttct 32225454  T
Q  773 taattgaagttaattaatcatttaagcataatgacatagttttgggttaccatgttatcggtataaagttttcaccgtcgtttaacaaatgattaatccg 872  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  32225455 taattgaagttaattaatcatttaagcataatgacatagttttgggttaccatgttatcggtataaagttttcaccgtcgttttacaaatgattaatccg 32225554  T
Q  873 tgtcagagaatctgtgggcatatacaaaactagatcgtccacccgtgctgccgcacgagtcatatatagttaaaaacataacgcaatgatcttta 967  Q
    | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  32225555 tttcagagaatctgtgggcatatacaaaactagatcgtccaccggtgctgccgcacgggtcatatatagttaaaaacataacgcaatgatcttta 32225649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 102; E-Value: 4e-50
Query Start/End: Original strand, 154 - 453
Target Start/End: Original strand, 32229703 - 32229983
Alignment:
Q  154 attaattaataaggatactaaacttgtcatccattcaa---gtat-gtgtataagttagcactgtgtatcttatcatataaactataggataggatatac 249  Q
    ||||||||||||||| |||||||||| ||||| ||  |   |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  32229703 attaattaataaggacactaaacttgccatcccttttaagagtattgtgtataagttagcactgtgtatcttatcatataatctataggataggatatac 32229802  T
Q  250 taagttagcactgtctgataatggatccaatatatgtaaggtaactgagctctgctcttcactttactgatcctgcctctgattgtttatgtttttccta 349  Q
    ||||||                |||||||||||  |||||||||| ||| | ||||||| |||||||||||||||||||||    ||||| |||||| ||    
T  32229803 taagtt----------------ggatccaatat--gtaaggtaacagagttatgctctttactttactgatcctgcctctg----tttatatttttctta 32229880  T
Q  350 attctgttgcatatttattattattcaattctgtttcctttctcttattttgttctcttttggctacttcaaattttgtgctttttc--tatgtgttaat 447  Q
    |||||||||||||| ||||   |||||||||||||||||||||| |||||| ||||||||||||||  |||||||||||||| ||||   ||||||||||    
T  32229881 attctgttgcatatatatt---attcaattctgtttcctttctcgtattttcttctcttttggctaagtcaaattttgtgctctttcaacatgtgttaat 32229977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 901 - 950
Target Start/End: Original strand, 9199866 - 9199915
Alignment:
Q  901 actagatcgtccacccgtgctgccgcacgagtcatatatagttaaaaaca 950  Q
    ||||||||||| ||||||||||||||||| |||||||| |||||||||||    
T  9199866 actagatcgtctacccgtgctgccgcacgggtcatatacagttaaaaaca 9199915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 901 - 950
Target Start/End: Original strand, 9201405 - 9201454
Alignment:
Q  901 actagatcgtccacccgtgctgccgcacgagtcatatatagttaaaaaca 950  Q
    ||||||||||| ||||||||||||||||| |||||||| |||||||||||    
T  9201405 actagatcgtctacccgtgctgccgcacgggtcatatacagttaaaaaca 9201454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 901 - 940
Target Start/End: Original strand, 23976706 - 23976745
Alignment:
Q  901 actagatcgtccacccgtgctgccgcacgagtcatatata 940  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  23976706 actagatcgtccacccgtgctgccgcacgggtcatatata 23976745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 900 - 938
Target Start/End: Original strand, 44376078 - 44376116
Alignment:
Q  900 aactagatcgtccacccgtgctgccgcacgagtcatata 938  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  44376078 aactagatcgtccacccgtgctgccgcacgggtcatata 44376116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 900 - 941
Target Start/End: Original strand, 17558824 - 17558865
Alignment:
Q  900 aactagatcgtccacccgtgctgccgcacgagtcatatatag 941  Q
    |||||||||||| ||||||||||||||||| |||||||||||    
T  17558824 aactagatcgtctacccgtgctgccgcacgggtcatatatag 17558865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 373 - 428
Target Start/End: Original strand, 32210810 - 32210865
Alignment:
Q  373 ttcaattctgtttcctttctcttattttgttctcttttggctacttcaaattttgt 428  Q
    |||||| |||||||||||||  |||||||||||||||||||| | | |||||||||    
T  32210810 ttcaatcctgtttcctttctagtattttgttctcttttggcttcatgaaattttgt 32210865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 900 - 938
Target Start/End: Complemental strand, 11238223 - 11238185
Alignment:
Q  900 aactagatcgtccacccgtgctgccgcacgagtcatata 938  Q
    |||||||||| ||||||||||||||||||| ||||||||    
T  11238223 aactagatcggccacccgtgctgccgcacgggtcatata 11238185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 900 - 938
Target Start/End: Complemental strand, 35760811 - 35760773
Alignment:
Q  900 aactagatcgtccacccgtgctgccgcacgagtcatata 938  Q
    ||||||||  |||||||||||||||||||||||||||||    
T  35760811 aactagattttccacccgtgctgccgcacgagtcatata 35760773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 901 - 938
Target Start/End: Complemental strand, 19745287 - 19745250
Alignment:
Q  901 actagatcgtccacccgtgctgccgcacgagtcatata 938  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  19745287 actagatcgtccacccgtgcggccgcacgggtcatata 19745250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 901 - 938
Target Start/End: Original strand, 19794519 - 19794556
Alignment:
Q  901 actagatcgtccacccgtgctgccgcacgagtcatata 938  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  19794519 actagatcgtccacccgtgcggccgcacgggtcatata 19794556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 2e-18; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 899 - 951
Target Start/End: Original strand, 16349713 - 16349765
Alignment:
Q  899 aaactagatcgtccacccgtgctgccgcacgagtcatatatagttaaaaacat 951  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  16349713 aaactagatcgtccacccgtgctgccgcacgggtcatatatagttaaaaacat 16349765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 901 - 951
Target Start/End: Complemental strand, 4082628 - 4082578
Alignment:
Q  901 actagatcgtccacccgtgctgccgcacgagtcatatatagttaaaaacat 951  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  4082628 actagatcgtccacccgtgctgccgcacgggtcatatatagttaaaaacat 4082578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 901 - 948
Target Start/End: Complemental strand, 40951524 - 40951477
Alignment:
Q  901 actagatcgtccacccgtgctgccgcacgagtcatatatagttaaaaa 948  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||||    
T  40951524 actagatcgtctacccgtgctgccgcacgggtcatatatagttaaaaa 40951477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 901 - 951
Target Start/End: Complemental strand, 16222745 - 16222695
Alignment:
Q  901 actagatcgtccacccgtgctgccgcacgagtcatatatagttaaaaacat 951  Q
    ||||||||||| ||||||||||||||||  ||||||||||| |||||||||    
T  16222745 actagatcgtctacccgtgctgccgcacatgtcatatatagctaaaaacat 16222695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 901 - 938
Target Start/End: Original strand, 25099236 - 25099273
Alignment:
Q  901 actagatcgtccacccgtgctgccgcacgagtcatata 938  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  25099236 actagatcgtccacccgtgctgccgcacgggtcatata 25099273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 901 - 938
Target Start/End: Original strand, 25158326 - 25158363
Alignment:
Q  901 actagatcgtccacccgtgctgccgcacgagtcatata 938  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  25158326 actagatcgtccacccgtgctgccgcacgggtcatata 25158363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 900 - 938
Target Start/End: Original strand, 30096275 - 30096313
Alignment:
Q  900 aactagatcgtccacccgtgctgccgcacgagtcatata 938  Q
    ||||||||||||||||||||||||||||||  |||||||    
T  30096275 aactagatcgtccacccgtgctgccgcacggatcatata 30096313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 901 - 938
Target Start/End: Original strand, 30088702 - 30088739
Alignment:
Q  901 actagatcgtccacccgtgctgccgcacgagtcatata 938  Q
    ||||||||||||| ||||||||||||||| ||||||||    
T  30088702 actagatcgtccatccgtgctgccgcacgggtcatata 30088739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 901 - 951
Target Start/End: Original strand, 42308123 - 42308173
Alignment:
Q  901 actagatcgtccacccgtgctgccgcacgagtcatatatagttaaaaacat 951  Q
    ||||||||||||||| ||||||||||||| |||||||||||||||||||||    
T  42308123 actagatcgtccacctgtgctgccgcacgggtcatatatagttaaaaacat 42308173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 899 - 951
Target Start/End: Complemental strand, 16367918 - 16367866
Alignment:
Q  899 aaactagatcgtccacccgtgctgccgcacgagtcatatatagttaaaaacat 951  Q
    ||||||||||||| ||||||||||||||||| ||||||||||||| |||||||    
T  16367918 aaactagatcgtctacccgtgctgccgcacgggtcatatatagtttaaaacat 16367866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 901 - 954
Target Start/End: Complemental strand, 26960257 - 26960204
Alignment:
Q  901 actagatcgtccacccgtgctgccgcacgagtcatatatagttaaaaacataac 954  Q
    ||||||||||| | ||||||||||||||| ||||||||||||||||||| ||||    
T  26960257 actagatcgtctatccgtgctgccgcacgggtcatatatagttaaaaacgtaac 26960204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 900 - 938
Target Start/End: Original strand, 405353 - 405391
Alignment:
Q  900 aactagatcgtccacccgtgctgccgcacgagtcatata 938  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  405353 aactagatcgtccacccgtgctgccgcacgggtcatata 405391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 898 - 943
Target Start/End: Complemental strand, 771689 - 771644
Alignment:
Q  898 aaaactagatcgtccacccgtgctgccgcacgagtcatatatagtt 943  Q
    |||||||| ||||| ||||||||||||||||| |||||||||||||    
T  771689 aaaactaggtcgtctacccgtgctgccgcacgggtcatatatagtt 771644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 901 - 938
Target Start/End: Complemental strand, 17695662 - 17695625
Alignment:
Q  901 actagatcgtccacccgtgctgccgcacgagtcatata 938  Q
    ||||||||||||||||||||||||||||| || |||||    
T  17695662 actagatcgtccacccgtgctgccgcacgggtaatata 17695625  T

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Target: chr1 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 901 - 954
Target Start/End: Original strand, 51387129 - 51387182
Alignment:
Q  901 actagatcgtccacccgtgctgccgcacgagtcatatatagttaaaaacataac 954  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||    
T  51387129 actagatcgtctacccgtgctgccgcacgggtcatatatagttaaaaacgtaac 51387182  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 901 - 951
Target Start/End: Complemental strand, 47250356 - 47250306
Alignment:
Q  901 actagatcgtccacccgtgctgccgcacgagtcatatatagttaaaaacat 951  Q
    ||||||||||||| ||| ||||||||||| |||||||||||||||||||||    
T  47250356 actagatcgtccatccgagctgccgcacgggtcatatatagttaaaaacat 47250306  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 899 - 938
Target Start/End: Original strand, 28947452 - 28947491
Alignment:
Q  899 aaactagatcgtccacccgtgctgccgcacgagtcatata 938  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  28947452 aaactagatcgtccacccgtgctgccgcacgggtcatata 28947491  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 901 - 951
Target Start/End: Original strand, 41323362 - 41323412
Alignment:
Q  901 actagatcgtccacccgtgctgccgcacgagtcatatatagttaaaaacat 951  Q
    |||||||||| || || |||||||||||| |||||||||||||||||||||    
T  41323362 actagatcgtacatccatgctgccgcacgggtcatatatagttaaaaacat 41323412  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 900 - 951
Target Start/End: Original strand, 27840306 - 27840357
Alignment:
Q  900 aactagatcgtccacccgtgctgccgcacgagtcatatatagttaaaaacat 951  Q
    |||||||||||| |||||||||| |||||| ||||| ||||||| |||||||    
T  27840306 aactagatcgtctacccgtgctgtcgcacgggtcatttatagtttaaaacat 27840357  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 900 - 938
Target Start/End: Original strand, 29387886 - 29387924
Alignment:
Q  900 aactagatcgtccacccgtgctgccgcacgagtcatata 938  Q
    ||||||||||||||||||| |||||||||| ||||||||    
T  29387886 aactagatcgtccacccgtactgccgcacgggtcatata 29387924  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 901 - 951
Target Start/End: Original strand, 38236310 - 38236360
Alignment:
Q  901 actagatcgtccacccgtgctgccgcacgagtcatatatagttaaaaacat 951  Q
    ||||||||||| |||||||| || ||||| ||||||||||| |||||||||    
T  38236310 actagatcgtctacccgtgcggcagcacgggtcatatatagctaaaaacat 38236360  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 904 - 954
Target Start/End: Original strand, 40978754 - 40978804
Alignment:
Q  904 agatcgtccacccgtgctgccgcacgagtcatatatagttaaaaacataac 954  Q
    |||||||| ||||||||||||||||| ||||||||   |||||||||||||    
T  40978754 agatcgtctacccgtgctgccgcacgggtcatatacgattaaaaacataac 40978804  T

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Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 901 - 943
Target Start/End: Complemental strand, 50293699 - 50293657
Alignment:
Q  901 actagatcgtccacccgtgctgccgcacgagtcatatatagtt 943  Q
    ||||||||||| |||| |||||||||||| |||||||||||||    
T  50293699 actagatcgtctacccatgctgccgcacgggtcatatatagtt 50293657  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 899 - 948
Target Start/End: Complemental strand, 6923570 - 6923521
Alignment:
Q  899 aaactagatcgtccacccgtgctgccgcacgagtcatatatagttaaaaa 948  Q
    ||||||||||||| |||||||| || ||||| ||||||||||| ||||||    
T  6923570 aaactagatcgtctacccgtgcagcagcacgggtcatatatagctaaaaa 6923521  T

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Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 900 - 961
Target Start/End: Complemental strand, 33815887 - 33815826
Alignment:
Q  900 aactagatcgtccacccgtgctgccgcacgagtcatatatagttaaaaacataacgcaatga 961  Q
    ||||||||||||  ||||| |||||||||  || ||||||||||||||||| ||| ||||||    
T  33815887 aactagatcgtctgcccgtactgccgcacaggttatatatagttaaaaacacaactcaatga 33815826  T

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Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 900 - 961
Target Start/End: Complemental strand, 33875357 - 33875296
Alignment:
Q  900 aactagatcgtccacccgtgctgccgcacgagtcatatatagttaaaaacataacgcaatga 961  Q
    ||||||||||||  ||||| |||||||||  || ||||||||||||||||| ||| ||||||    
T  33875357 aactagatcgtctgcccgtactgccgcacaggttatatatagttaaaaacacaactcaatga 33875296  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 898 - 938
Target Start/End: Complemental strand, 31097944 - 31097904
Alignment:
Q  898 aaaactagatcgtccacccgtgctgccgcacgagtcatata 938  Q
    |||||||||||||||||||||||||||||||| ||||||||    
T  31097944 aaaactagatcgtccacccgtgctgccgcacgggtcatata 31097904  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 900 - 938
Target Start/End: Complemental strand, 32661099 - 32661061
Alignment:
Q  900 aactagatcgtccacccgtgctgccgcacgagtcatata 938  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  32661099 aactagatcgtctacccgtgctgccgcacgagtcatata 32661061  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 903 - 941
Target Start/End: Original strand, 2974181 - 2974219
Alignment:
Q  903 tagatcgtccacccgtgctgccgcacgagtcatatatag 941  Q
    |||||||||||||||||||||||||| ||| ||||||||    
T  2974181 tagatcgtccacccgtgctgccgcacaagttatatatag 2974219  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 903 - 940
Target Start/End: Original strand, 2976710 - 2976747
Alignment:
Q  903 tagatcgtccacccgtgctgccgcacgagtcatatata 940  Q
    ||||||||||||||||||||||||||| || |||||||    
T  2976710 tagatcgtccacccgtgctgccgcacgggttatatata 2976747  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 901 - 943
Target Start/End: Original strand, 22136279 - 22136321
Alignment:
Q  901 actagatcgtccacccgtgctgccgcacgagtcatatatagtt 943  Q
    ||||||||||||||||||| ||||||||| |||||||||||||    
T  22136279 actagatcgtccacccgtgttgccgcacgggtcatatatagtt 22136321  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 900 - 948
Target Start/End: Original strand, 4843570 - 4843618
Alignment:
Q  900 aactagatcgtccacccgtgctgccgcacgagtcatatatagttaaaaa 948  Q
    ||||||||| ||||||||||||||||||||  || ||||||||||||||    
T  4843570 aactagatcatccacccgtgctgccgcacggttcttatatagttaaaaa 4843618  T

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Target: scaffold0896 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0896
Description:

Target: scaffold0896; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 901 - 938
Target Start/End: Complemental strand, 1146 - 1109
Alignment:
Q  901 actagatcgtccacccgtgctgccgcacgagtcatata 938  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  1146 actagatcgtccacccgtgctgccgcacgggtcatata 1109  T

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Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 901 - 938
Target Start/End: Original strand, 8657064 - 8657101
Alignment:
Q  901 actagatcgtccacccgtgctgccgcacgagtcatata 938  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  8657064 actagatcgtccacccgtgctgccgcacgggtcatata 8657101  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 897 - 938
Target Start/End: Original strand, 24570750 - 24570791
Alignment:
Q  897 caaaactagatcgtccacccgtgctgccgcacgagtcatata 938  Q
    |||||||||||||||||||||||||||| |||| ||||||||    
T  24570750 caaaactagatcgtccacccgtgctgccacacgggtcatata 24570791  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 901 - 938
Target Start/End: Original strand, 33289070 - 33289107
Alignment:
Q  901 actagatcgtccacccgtgctgccgcacgagtcatata 938  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  33289070 actagatcgtccacccgtgctgccgcacgggtcatata 33289107  T

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Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 897 - 938
Target Start/End: Complemental strand, 37099777 - 37099736
Alignment:
Q  897 caaaactagatcgtccacccgtgctgccgcacgagtcatata 938  Q
    ||||| ||||||||||||||||||||||||||| ||||||||    
T  37099777 caaaattagatcgtccacccgtgctgccgcacgggtcatata 37099736  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 901 - 940
Target Start/End: Original strand, 44708227 - 44708266
Alignment:
Q  901 actagatcgtccacccgtgctgccgcacgagtcatatata 940  Q
    ||||||||||| ||||||||||||||||| ||||||||||    
T  44708227 actagatcgtctacccgtgctgccgcacgggtcatatata 44708266  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 901 - 948
Target Start/End: Complemental strand, 53693258 - 53693211
Alignment:
Q  901 actagatcgtccacccgtgctgccgcacgagtcatatatagttaaaaa 948  Q
    ||||||||||| ||||||||||||||||  ||||||||||||| ||||    
T  53693258 actagatcgtctacccgtgctgccgcacaggtcatatatagtttaaaa 53693211  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 900 - 938
Target Start/End: Original strand, 5561552 - 5561590
Alignment:
Q  900 aactagatcgtccacccgtgctgccgcacgagtcatata 938  Q
    |||||||||||| ||||||||||||||||| ||||||||    
T  5561552 aactagatcgtctacccgtgctgccgcacgggtcatata 5561590  T

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