View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2859-Insertion-20 (Length: 245)

Name: NF2859-Insertion-20
Description: NF2859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2859-Insertion-20
NF2859-Insertion-20
[»] chr4 (1 HSPs)
chr4 (7-245)||(44499214-44499452)
[»] chr8 (1 HSPs)
chr8 (7-245)||(24191753-24191991)
[»] chr7 (2 HSPs)
chr7 (7-245)||(44375964-44376202)
chr7 (7-245)||(44384831-44385069)


Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 7 - 245
Target Start/End: Complemental strand, 44499452 - 44499214
Alignment:
Q  7 aacctgcacagtgaaaagctagaaaggtaagcttcaagatctggagaatcgaacgaaattggagaacaatcggaggagagaggtgcgaatctgagcagtt 106  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44499452 aacctgcgcagtgaaaagctagaaaggtaagcttcaagatctggagaatcgaacgaaattggagaacaatcggaggagagaggtgcgaatctgagcagtt 44499353  T
Q  107 acggaggagaacagagcaaaaccaacgccggaaggagaagcaaggtcacctgtgcgaatctgtccatcaattttctcttcaaaactgatcttccttccac 206  Q
    |||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||    
T  44499352 acggaggagaacagagcaaaaccaacgccgaaaggagaagaaaggtcatctgtgcgaatctgtccatcaattttctcttcaaaactaatctcccttccac 44499253  T
Q  207 gaaagggtcgttctccgttgcgccacgccgccatcatgc 245  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  44499252 gaaagggtcgttctccgttgcgccacgccgccgtcatgc 44499214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 7 - 245
Target Start/End: Original strand, 24191753 - 24191991
Alignment:
Q  7 aacctgcacagtgaaaagctagaaaggtaagcttcaagatctggagaatcgaacgaaattggagaacaatcggaggagagaggtgcgaatctgagcagtt 106  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||    
T  24191753 aacctgcgcagtgaaaagctagaaaggtaagcttcaagatctggagaatcgaccgaaattggagaacaatcggaggagagaggtgcgaatctaagcagtt 24191852  T
Q  107 acggaggagaacagagcaaaaccaacgccggaaggagaagcaaggtcacctgtgcgaatctgtccatcaattttctcttcaaaactgatcttccttccac 206  Q
    |||||||||||  ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  24191853 acggaggagaatggagcaaaaccaacgccggaaggagaagaaaggtctcctgtgcgaatctgtccatcaattttctcttcaaaactgatctcccttccac 24191952  T
Q  207 gaaagggtcgttctccgttgcgccacgccgccatcatgc 245  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  24191953 gaaagggtcgttctccgttgcgccacgccgccgtcatgc 24191991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 171; Significance: 6e-92; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 7 - 245
Target Start/End: Complemental strand, 44376202 - 44375964
Alignment:
Q  7 aacctgcacagtgaaaagctagaaaggtaagcttcaagatctggagaatcgaacgaaattggagaacaatcggaggagagaggtgcgaatctgagcagtt 106  Q
    ||||||| ||| ||||||| ||||||||||||||| ||||| |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||    
T  44376202 aacctgcgcagggaaaagccagaaaggtaagcttcgagatccggagaatcgaccgaaattggagaacagtcggaggagagaggtgcgaatctgagcagtt 44376103  T
Q  107 acggaggagaacagagcaaaaccaacgccggaaggagaagcaaggtcacctgtgcgaatctgtccatcaattttctcttcaaaactgatcttccttccac 206  Q
    |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| |||| |||||||||||||||||||||||||| ||||| ||    
T  44376102 acggaggagaacggagcaaaaccaacgccggaaggagaagaaaggtcacctgtgcgaatatgtcgatcaattttctcttcaaaactgatctcccttctac 44376003  T
Q  207 gaaagggtcgttctccgttgcgccacgccgccatcatgc 245  Q
    |||||||||||||||||| ||| ||| ||||| ||||||    
T  44376002 gaaagggtcgttctccgtcgcgtcaccccgccgtcatgc 44375964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 7 - 245
Target Start/End: Complemental strand, 44385069 - 44384831
Alignment:
Q  7 aacctgcacagtgaaaagctagaaaggtaagcttcaagatctggagaatcgaacgaaattggagaacaatcggaggagagaggtgcgaatctgagcagtt 106  Q
    ||||||| ||| ||||||| ||||||||||||||| ||||| |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||    
T  44385069 aacctgcgcagggaaaagccagaaaggtaagcttcgagatccggagaatcgaccgaaattggagaacagtcggaggagagaggtgcgaatctgagcagtt 44384970  T
Q  107 acggaggagaacagagcaaaaccaacgccggaaggagaagcaaggtcacctgtgcgaatctgtccatcaattttctcttcaaaactgatcttccttccac 206  Q
    |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| |||| |||||||||||||||||||||||||| ||||| ||    
T  44384969 acggaggagaacggagcaaaaccaacgccggaaggagaagaaaggtcacctgtgcgaatatgtcgatcaattttctcttcaaaactgatctcccttctac 44384870  T
Q  207 gaaagggtcgttctccgttgcgccacgccgccatcatgc 245  Q
    |||||||||||||||||| ||| ||| ||||| ||||||    
T  44384869 gaaagggtcgttctccgtcgcgtcaccccgccgtcatgc 44384831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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