View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2859-Insertion-21 (Length: 228)

Name: NF2859-Insertion-21
Description: NF2859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2859-Insertion-21
NF2859-Insertion-21
[»] chr8 (3 HSPs)
chr8 (6-228)||(35594012-35594234)
chr8 (6-222)||(35568105-35568321)
chr8 (6-222)||(35582836-35583052)


Alignment Details
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 6 - 228
Target Start/End: Original strand, 35594012 - 35594234
Alignment:
Q  6 catgaggtgcccttttgtcaagatcacatattggcatcaaaggataccactgtgagtaccagtcaaatttctctgaacctgtttcatcttctggttcatc 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  35594012 catgaggtgcccttttgtcaagatcacatattggcatcaaaggataccactgtgagtaccagtcaaatttctctgaacctgtttcaacttctggttcatc 35594111  T
Q  106 atccacttcaaggttactagtactagactctgttaatggagaaggtgataaggcggtgaaaagcttgaattttgaagcgttcccaccaattaatggaagt 205  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||    
T  35594112 atccacttcaaggttactactactagactctgttaatggagaaggtgataaggcagtgaaaagcttgaattttgaagcgttcccacgaattaatggaagt 35594211  T
Q  206 gttgaatgcacttgtgagttgaa 228  Q
    |||||||||||||||||||||||    
T  35594212 gttgaatgcacttgtgagttgaa 35594234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 6 - 222
Target Start/End: Original strand, 35568105 - 35568321
Alignment:
Q  6 catgaggtgcccttttgtcaagatcacatattggcatcaaaggataccactgtgagtaccagtcaaatttctctgaacctgtttcatcttctggttcatc 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  35568105 catgaggtgcccttttgtcaagatcacatattggcatcaaaggataccactgtgagtaccagtcaaatttctctgaacctgtttcaacttctggttcatc 35568204  T
Q  106 atccacttcaaggttactagtactagactctgttaatggagaaggtgataaggcggtgaaaagcttgaattttgaagcgttcccaccaattaatggaagt 205  Q
    ||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||||| |||||||||||||    
T  35568205 atccacttcaaggttactactactagactctgttaacggagaaggtgataaggcagtgaaaagcttgaattttgaagtgttcccacgaattaatggaagt 35568304  T
Q  206 gttgaatgcacttgtga 222  Q
    |||||||| | ||||||    
T  35568305 gttgaatggatttgtga 35568321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 6 - 222
Target Start/End: Original strand, 35582836 - 35583052
Alignment:
Q  6 catgaggtgcccttttgtcaagatcacatattggcatcaaaggataccactgtgagtaccagtcaaatttctctgaacctgtttcatcttctggttcatc 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  35582836 catgaggtgcccttttgtcaagatcacatattggcatcaaaggataccactgtgagtaccagtcaaatttctctgaacctgtttcaacttctggttcatc 35582935  T
Q  106 atccacttcaaggttactagtactagactctgttaatggagaaggtgataaggcggtgaaaagcttgaattttgaagcgttcccaccaattaatggaagt 205  Q
    ||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||||| |||||||||||||    
T  35582936 atccacttcaaggttactactactagactctgttaacggagaaggtgataaggcagtgaaaagcttgaattttgaagtgttcccacgaattaatggaagt 35583035  T
Q  206 gttgaatgcacttgtga 222  Q
    |||||||| | ||||||    
T  35583036 gttgaatggatttgtga 35583052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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