View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2859-Insertion-26 (Length: 905)
Name: NF2859-Insertion-26
Description: NF2859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2859-Insertion-26 |
 | |
|
| [»] chr5 (20 HSPs) |
| |
|
| [»] chr4 (4 HSPs) |
| |
|
| [»] chr3 (2 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 810; Significance: 0; HSPs: 20)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 810; E-Value: 0
Query Start/End: Original strand, 8 - 905
Target Start/End: Complemental strand, 37704459 - 37703562
Alignment:
| Q |
8 |
tttggtccttgccccttagtttcaggttatgtttcctatataaatagaggctaatcaattggtatatcctaaatcatcaaaatgcggtccttttttattc |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37704459 |
tttggtccttgccccttagtttcaggttatgtttcctatataaatagaggctaatcaattggtatatcctaaatcatcaaaatgcggtccttttttattc |
37704360 |
T |
|
| Q |
108 |
tattgccttattttacttttcacttgttcttgttattgctgcttactcattttacttcctacactttctcattgtgcagccaacatgatagctccgcctt |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37704359 |
tattgccttattttacttttcacttgttcttgttattgctgcttactcattttacttcctacactttctcattgtgcagccaacatgatagctccgcctt |
37704260 |
T |
|
| Q |
208 |
gttacaattcaaacactcgttttctgtcaacacttcatctaaacccggttttctgtctatgtgttcgtctttttcttttaagacagaatcttggaaaacc |
307 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
37704259 |
gttacaattcaaacactcattttctgtcaacacttcatctaaacccggttttctgtctatgtgtttgtctttttcttttaagacagaatcttggaaaacc |
37704160 |
T |
|
| Q |
308 |
ggcacagattgttgcgagtgggatggtgtcacgtgcgacaccgtgtctgatcacgtgattggtttggatctcagttgcaacaatctgaaaggtgaattac |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37704159 |
ggcacagattgttgcgagtgggatggtgtcacgtgcgacaccgtgtctgatcacgtgattggtttggatctcagttgcaacaatctgaaaggtgaattac |
37704060 |
T |
|
| Q |
408 |
aacctaatagcacaatctacaagcttagacaccttcaacaactcaacttggcttttaatcatttttctggatcttcaatgcctattggtattggcgattt |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37704059 |
aacctaatagcacaatctacaagcttagacaccttcaacaactcaacttggcttttaatcatttttctggatcttcaatgcctattggtattggcgattt |
37703960 |
T |
|
| Q |
508 |
agtgaatctcacacatctaaatttatcattttgtcacctcaagagtagtactccctccacaatctctcatttgtcaaaattaatatcacttgatcttagc |
607 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37703959 |
agtgaatctcacacatctaaatttatcattttgtcacctcaagggtaatactccctccacaatctctcatttgtcaaaattaatatcacttgatcttagc |
37703860 |
T |
|
| Q |
608 |
agttatagttactcgaacatggaaattaatccgttgacatggaagaaactcattcgtaatgctactaatttaagggagcttcatttggatagagtgaata |
707 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| ||| ||| |
|
|
| T |
37703859 |
agttatagttactcgaacatggaaattaatccgttgacatggaagaaactcattcataatgctactaatttaagggagcttcatttgaatagtgtggata |
37703760 |
T |
|
| Q |
708 |
tgtcttcaatcagagagagctctttgttgatgctaaagaatttgtcatcctctttggtttctcttagtctaccaaaaactgagttgcaaggaaatttgtc |
807 |
Q |
| |
|
||||||| || | |||||||| |||| |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
37703759 |
tgtcttccattacggagagctcattgtcaatgctaaagaatttgtcatcctctttggtttctcttagtctatcagaaactgagttgcaaggaaatttgtc |
37703660 |
T |
|
| Q |
808 |
aagtgacatcctctctttacctaatcttcaaagattggatttgtcatctaattataaccttcgtggtcaacttccaaagtccaactggagcactcctc |
905 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |||||||||||| |||||| |
|
|
| T |
37703659 |
aagtgacatcctctctttacctaatcttcaaagattggatttgtcattcaattataaccttagtggtcaacttccaaaatccaactggagctctcctc |
37703562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 95 - 905
Target Start/End: Complemental strand, 37713328 - 37712518
Alignment:
| Q |
95 |
tccttttttattctattgccttattttacttttcacttgttcttgttattgctgcttactcattttacttcctacactttctcattgtgcagccaacatg |
194 |
Q |
| |
|
||||||||||||| ||||||||||||||| |||||||| |||| ||| ||| |||||||||||||||||||| ||||||||||| |||||| | |||||| |
|
|
| T |
37713328 |
tccttttttattccattgccttattttacctttcacttcttctcgttgttgttgcttactcattttacttcccacactttctcactgtgcaacaaacatg |
37713229 |
T |
|
| Q |
195 |
atagctccgccttgttacaattcaaacactcgttttctgtcaacacttcatctaaacccggttttctgt-ctatg--tgttcgtctttttcttttaagac |
291 |
Q |
| |
|
| | ||| |||||||||||||||||| |||| ||||||||||||||||||||| ||||| | | || || || ||||| ||||||||||| ||||| |
|
|
| T |
37713228 |
acaactctgccttgttacaattcaaaaactctttttctgtcaacacttcatctcaacccaat---ccgtactttggttgttcctctttttctttcaagac |
37713132 |
T |
|
| Q |
292 |
agaatcttggaaaaccggcacagattgttgcgagtgggatggtgtcacgtgcgacaccgtgtctgatcacgtgattggtttggatctcagttgcaacaat |
391 |
Q |
| |
|
|||||||||| ||| | | ||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
37713131 |
agaatcttggcaaaacagtacagattgttgtgagtgggatggtgtcacgtgcgacaccatgtcagatcacgtgattggtctggacctcagttgcaacaat |
37713032 |
T |
|
| Q |
392 |
ctgaaaggtgaattacaacctaatagcacaatctacaagcttagacaccttcaacaactcaacttggcttttaatcatttttctggatcttcaatgccta |
491 |
Q |
| |
|
|| |||||||||||||| || |||||||| |||| |||||| |||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |
|
|
| T |
37713031 |
ctaaaaggtgaattacatcccaatagcaccatctttcagcttaaacaccttcaacaactcaacttggcttttaatcatttttcttggtcttcaatgccta |
37712932 |
T |
|
| Q |
492 |
ttggtattggcgatttagtgaatctcacacatctaaatttatcattttgtcacctcaagagtagtactccctccacaatctctcatttgtcaaaattaat |
591 |
Q |
| |
|
||||| |||| ||||||||||| ||||||||||||||| ||||| |||| ||||||| ||| || ||| ||||||||||||||||||||||||||| | |
|
|
| T |
37712931 |
ttggtgttggagatttagtgaaactcacacatctaaatctatcaaattgttacctcaatggtaatattccttccacaatctctcatttgtcaaaattagt |
37712832 |
T |
|
| Q |
592 |
atcacttgatcttagcagttatagttactcgaacatggaaattaatccgttgacatggaagaaactcattcgtaatgctactaatttaagggagcttcat |
691 |
Q |
| |
|
|||||||||||||||||||| | | | | | || || | ||||| |||||||||||||||||||||| ||||||||||||||||||||| ||| || |
|
|
| T |
37712831 |
atcacttgatcttagcagttttggggatgtggaattgaaactaaatccattgacatggaagaaactcattcataatgctactaatttaagggaactttat |
37712732 |
T |
|
| Q |
692 |
ttggatagagtgaatatgtcttcaatcagagagagctctttgttgatgctaaagaatttgtcatcctctttggtttctcttagtctaccaaaaactgagt |
791 |
Q |
| |
|
||||||| ||||| |||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | | |||| || |
|
|
| T |
37712731 |
ttggataatgtgaacatgtcttccatcagagagagctctttgtcaatgctaaagaatttgtcatcctctttggtttctcttagtctacgagacactgtgt |
37712632 |
T |
|
| Q |
792 |
tgcaaggaaatttgtcaagtgacatcctctctttacctaatcttcaaagattggatttgtcatctaattataaccttcgtggtcaacttccaaagtccaa |
891 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||| |||||||||||||||||||||| |
|
|
| T |
37712631 |
tgcaaggaaatatatcaagtgacatcctctctttacctaatcttcaaagattggatttgtcatttaatcaaaaccttagtggtcaacttccaaagtccaa |
37712532 |
T |
|
| Q |
892 |
ctggagcactcctc |
905 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
37712531 |
ctggagcactcctc |
37712518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 95 - 905
Target Start/End: Complemental strand, 37641585 - 37640766
Alignment:
| Q |
95 |
tccttttttattctattgccttattttacttttcacttgttcttgttattgctgcttactcattttacttcctacactttctcattgtgcagccaacatg |
194 |
Q |
| |
|
||||||||||||| ||||||||||||||| |||||||| || ||||| ||| || ||||||||||||||||||||||||||||| |||||| |||||||| |
|
|
| T |
37641585 |
tccttttttattccattgccttattttacctttcacttcttgttgttgttgttgattactcattttacttcctacactttctcactgtgcaaccaacatg |
37641486 |
T |
|
| Q |
195 |
atagctccgccttgttacaattcaaacactcgttttctgtcaacacttcatctaaacc---cggttttctgtctatgtgttcgtctttttcttttaagac |
291 |
Q |
| |
|
| | ||| |||||||||||||||||| |||| |||||||||||||||||||||||||| || | || |||||| ||| | ||||||||||| ||||| |
|
|
| T |
37641485 |
acacctctgccttgttacaattcaaaaactctttttctgtcaacacttcatctaaaccggacgatattttgtctagttgtccctctttttctttcaagac |
37641386 |
T |
|
| Q |
292 |
agaatcttggaaaaccggcacagattgttgcgagtgggatggtgtcacgtgcgacaccgtgtctgatcacgtgattggtttggatctcagttgcaacaat |
391 |
Q |
| |
|
|||||||||||||| | ||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
37641385 |
agaatcttggaaaaacaatacagattgttgtgagtgggatggtgtcacgtgcgacaccatgtcagatcacgtgattggtctggacctcagttgcaacaat |
37641286 |
T |
|
| Q |
392 |
ctgaaaggtgaattacaacctaatagcacaatctacaagcttagacaccttcaacaactcaacttggcttttaatcatttttctggatcttcaatgccta |
491 |
Q |
| |
|
|| |||||||||||||| || |||||||| |||| |||||| ||||||||| ||||||||||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
37641285 |
ctaaaaggtgaattacatcccaatagcaccatctttcagcttaaacaccttcaccaactcaacttggcttttaataatttttctttgtcttcaatgccta |
37641186 |
T |
|
| Q |
492 |
ttggtattggcgatttagtgaatctcacacatctaaatttatcattttgtcacctcaagagtagtactccctccacaatctctcatttgtcaaaattaat |
591 |
Q |
| |
|
||||| |||| ||||||||||| ||||||||||||||| ||||| ||| ||||||| ||| || ||| ||||||||||||||||||||||||||| | |
|
|
| T |
37641185 |
ttggtgttggagatttagtgaaactcacacatctaaatctatcaaaatgttacctcaatggtaatattccttccacaatctctcatttgtcaaaattagt |
37641086 |
T |
|
| Q |
592 |
atcacttgatcttagcagttatagttactcgaaca--------tggaaattaatccgttgacatggaagaaactcattcgtaatgctactaatttaaggg |
683 |
Q |
| |
|
||||||||||||||||||||| | | | ||||| || || | ||| | || | |||||||||||||||| |||||||||||||||||||| |
|
|
| T |
37641085 |
atcacttgatcttagcagttactggtcc--gaacaagtgggattgaaactcaattcattcatttggaagaaactcattcataatgctactaatttaaggg |
37640988 |
T |
|
| Q |
684 |
agcttcatttggatagagtgaatatgtcttcaatcagagagagctctttgttgatgctaaagaatttgtcatcctctttggtttctcttagtctaccaaa |
783 |
Q |
| |
|
||||||||||| |||| ||| |||||||||| || | ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
37640987 |
agcttcatttgaatagtgtggatatgtcttccattacggagagctctttgtcaatgctaaagaatttgtcatcctctttggtttctcttagtctacgaaa |
37640888 |
T |
|
| Q |
784 |
aactgagttgcaaggaaatttgtcaagtgacatcctctctttacctaatcttcaaagattggatttgtcatctaattataaccttcgtggtcaacttcca |
883 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||| |||||||||||||| |
|
|
| T |
37640887 |
aactgagttgcaaggaaatttgtcaagtgacatcctctctttacctaatcttcaaagattggatttgtcatttaatcaaaaccttagtggtcaacttcca |
37640788 |
T |
|
| Q |
884 |
aagtccaactggagcactcctc |
905 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
37640787 |
aagtccaactggagcactcctc |
37640766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 95 - 905
Target Start/End: Complemental strand, 37534804 - 37533994
Alignment:
| Q |
95 |
tccttttttattctattgccttattttacttttcacttgttcttgttattgctgcttactcattttacttcctacactttctcattgtgcagccaacatg |
194 |
Q |
| |
|
||||||||||||| ||||||||||||||| |||||||| |||||||| ||| || ||||||||||||||||||||||||||||| |||||| | |||||| |
|
|
| T |
37534804 |
tccttttttattccattgccttattttacctttcactttttcttgttgttgttgattactcattttacttcctacactttctcactgtgcaacaaacatg |
37534705 |
T |
|
| Q |
195 |
atagctccgccttgttacaattcaaacactcgttttctgtcaacacttcatctaaacccggttttctgtctatgtgttcgtctttttcttttaagacaga |
294 |
Q |
| |
|
| | ||| |||||||||||||||||| |||| |||||||||| |||||||||| ||| | |||| | |||| ||||||||||| |||||||| |
|
|
| T |
37534704 |
acaactctgccttgttacaattcaaaaactctttttctgtcagcacttcatctcaactctattttgcgc------gttcttctttttctttcaagacaga |
37534611 |
T |
|
| Q |
295 |
atcttggaaaaccggcacagattgttgcgagtgggatggtgtcacgtgcgacaccgtgtctgatcacgtgattggtttggatctcagttgcaacaatctg |
394 |
Q |
| |
|
||||||| ||| | | ||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||| |||| ||||||||||||||||| |
|
|
| T |
37534610 |
atcttgggaaaacagtacagattgttgtgagtgggatggtgtcacgtgcgacaccatgtcagatcacgtgattggtctggacctcagttgcaacaatcta |
37534511 |
T |
|
| Q |
395 |
aaaggtgaattacaacctaatagcacaatctacaagcttagacaccttcaacaactcaacttggcttttaatcatttttctggatcttcaatgcctattg |
494 |
Q |
| |
|
|||||||||||||| || |||||||| |||| |||||| |||||||||||||||||||||||||||||||||||||||| | |||||||| ||||||| |
|
|
| T |
37534510 |
aaaggtgaattacatcccaatagcaccatctttcagcttaaacaccttcaacaactcaacttggcttttaatcatttttcttggtcttcaatacctattg |
37534411 |
T |
|
| Q |
495 |
gtattggcgatttagtgaatctcacacatctaaatttatcattttgtcacctcaagagtagtactccctccacaatctctcatttgtcaaaattaatatc |
594 |
Q |
| |
|
|| |||| ||||||||||| ||||||||||||||| |||||| | | |||||| ||| || ||| ||||||||||||||||||||||||||| |||| |
|
|
| T |
37534410 |
gtgttggagatttagtgaaactcacacatctaaatctatcatactctgacctcagtggtaatattccttccacaatctctcatttgtcaaaattagtatc |
37534311 |
T |
|
| Q |
595 |
acttgatcttagcagttatagttactc-gaac----atggaaatt-aatccgttgacatggaagaaactcattcgtaatgctactaatttaagggagctt |
688 |
Q |
| |
|
|||||||||||||||||| | | | | ||| || |||| | ||| |||| | |||||||||||||||| ||||||||||||||||||||| ||| |
|
|
| T |
37534310 |
acttgatcttagcagttactggtccgcagaagtgggattgaaactcaattcgttcatttggaagaaactcattcataatgctactaatttaagggaactt |
37534211 |
T |
|
| Q |
689 |
catttggatagagtgaatatgtcttcaatcagagagagctctttgttgatgctaaagaatttgtcatcctctttggtttctcttagtctaccaaaaactg |
788 |
Q |
| |
|
||||||||| ||||| |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
37534210 |
tatttggataatgtgaacatgtcttccatcagagagagctctttgtcaatgctaaagaatttgtcatcctctttggtttctcttagtctatcagaaactg |
37534111 |
T |
|
| Q |
789 |
agttgcaaggaaatttgtcaagtgacatcctctctttacctaatcttcaaagattggatttgtcatctaattataaccttcgtggtcaacttccaaagtc |
888 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
37534110 |
agttgcaaggaaatttgtcaagtgacatcctctctttacctaatcttcaaagattggatttgtcatctaatgataaccttagtggtcaacttccaaagtc |
37534011 |
T |
|
| Q |
889 |
caactggagcactcctc |
905 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
37534010 |
caactggagcactcctc |
37533994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 87 - 905
Target Start/End: Complemental strand, 37698505 - 37697681
Alignment:
| Q |
87 |
aaatgcggtccttttttattctattgccttattttacttttcacttgttcttgttattgctgcttactcattttacttcctacactttctcattgtgcag |
186 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| | |||||||| |||||||| ||| ||||||||||||||||||||||||| ||||||| |||| |
|
|
| T |
37698505 |
aaatggggtccttttttattctattgccttattttgcctttcactttttcttgttgttgttgcttactcattttacttcctacacactctcattatgcaa |
37698406 |
T |
|
| Q |
187 |
ccaacatgatagctccgccttgttacaattcaaacactcgttttctgtcaacacttcatctaaacccggttttctgtctatgtgttcgtctttttctttt |
286 |
Q |
| |
|
||| ||||| || || |||||||||||||||||| |||| ||||| || |||||||| ||| |||| | | || ||||| ||||| |||||||||| |
|
|
| T |
37698405 |
ccatcatgacagttctgccttgttacaattcaaaaactcattttcagttaacacttcgtctcaacctgatatttggtctagatgttcctctttttcttcc |
37698306 |
T |
|
| Q |
287 |
aagacagaatcttggaaaaccggcacagattgttgcgagtgggatggtgtcacgtgcgacaccgtgtctgatcacgtgattggtttggatctcagttgca |
386 |
Q |
| |
|
| ||||||||||||||||| | |||||||||||| ||||||||||||||||||| ||||| | ||| ||| |||||||||||||||| |||||||||| |
|
|
| T |
37698305 |
aggacagaatcttggaaaaacaatacagattgttgcaagtgggatggtgtcacgtgtgacactgagtcggattacgtgattggtttggacctcagttgca |
37698206 |
T |
|
| Q |
387 |
acaatctgaaaggtgaattacaacctaatagcacaatctacaagcttagacaccttcaacaactcaacttggcttttaatcatttttctggatcttcaat |
486 |
Q |
| |
|
||||| |||||||||||||||| || |||||||| |||| | ||||||||| |||||||||||| || |||||||||||| |||||||| | |||||||| |
|
|
| T |
37698205 |
acaatttgaaaggtgaattacatcccaatagcactatcttccagcttagacgccttcaacaacttaatttggcttttaataatttttcttggtcttcaat |
37698106 |
T |
|
| Q |
487 |
gcctattggtattggcgatttagtgaatctcacacatctaaatttatcattttgtcacctcaagagtagtactccctccacaatctctcatttgtcaaaa |
586 |
Q |
| |
|
||||||||| | || ||||||||||| ||||||||||||||| ||||| |||| ||||||| ||| || ||| |||||||||||||||||||||||| |
|
|
| T |
37698105 |
acctattggtgtcggagatttagtgaaactcacacatctaaatctatcaaattgttacctcaatggtaatattccttccacaatctctcatttgtcaaaa |
37698006 |
T |
|
| Q |
587 |
ttaatatcacttgatcttagcagttatagttactcgaaca--------tggaaattaatccgttgacatggaagaaactcattcgtaatgctactaattt |
678 |
Q |
| |
|
||| |||||||||||||||||||||| | || |||||| || || | ||| | || | |||||||||||||||| ||||||||||||||| |
|
|
| T |
37698005 |
ttagtatcacttgatcttagcagttactggta--cgaacaagtgggattgaaactcaattcattcatttggaagaaactcattcataatgctactaattt |
37697908 |
T |
|
| Q |
679 |
aagggagcttcatttggatagagtgaatatgtcttcaatcagagagagctctttgttgatgctaaagaatttgtcatcctctttggtttctcttagtcta |
778 |
Q |
| |
|
|||||| |||||| | || ||||||| |||||||||||| |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37697907 |
aagggatcttcatcttaatggagtgaacatgtcttcaatcggagagagctcattgtcaatgctaaagaatttgtcatcctctttggtttctcttagtcta |
37697808 |
T |
|
| Q |
779 |
ccaaaaactgagttgcaaggaaatttgtcaagtgacatcctctctttacctaatcttcaaagattggatttgtcatctaattataaccttcgtggtcaac |
878 |
Q |
| |
|
| ||| |||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||| ||||||||| |
|
|
| T |
37697807 |
cgaaacactgtgttgcaaggaaatatatcaagtgacatcctctctttacctaatcttcaaagattggatttgtcatttaatcaaaaccttagtggtcaac |
37697708 |
T |
|
| Q |
879 |
ttccaaagtccaactggagcactcctc |
905 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
37697707 |
ttccaaagtccaactggagcactcctc |
37697681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 87 - 905
Target Start/End: Complemental strand, 37437413 - 37436601
Alignment:
| Q |
87 |
aaatgcggtccttttttattctattgccttattttacttttcacttgttcttgttattgctgcttactcattttacttcctacactttctcattgtgcag |
186 |
Q |
| |
|
||||| |||||||||||||||| ||||||| |||| | |||||||||||| ||| ||| |||||||||| |||||| || ||||||||||||| |||| |
|
|
| T |
37437413 |
aaatggggtccttttttattcttttgccttgttttgcccttcacttgttctcgttgttgttgcttactcactttactacccacactttctcattatgcaa |
37437314 |
T |
|
| Q |
187 |
ccaacatgatagctccgccttgttacaattcaaacactcgttttctgtcaacacttcatctaaacccggttttctgt-ctatg--tgttcgtctttttct |
283 |
Q |
| |
|
||| ||||| | ||| ||||| |||||||||||| |||| ||| | |||||||||||||| ||||| | | || || || |||| ||||||||| |
|
|
| T |
37437313 |
ccatcatgacacctctgccttattacaattcaaaaactcttttcttctcaacacttcatctcaacccaat---ccgtactttggttgtttctctttttct |
37437217 |
T |
|
| Q |
284 |
tttaagacagaatcttggaaaaccggcacagattgttgcgagtgggatggtgtcacgtgcgacaccgtgtctgatcacgtgattggtttggatctcagtt |
383 |
Q |
| |
|
|| ||||||||||||||| ||| | | ||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||| |||| ||||||| |
|
|
| T |
37437216 |
ttcaagacagaatcttgggaaaacagtacagattgttgtgagtgggatggtgtcacgtgcgacaccatgtcagatcacgtgattggtctggacctcagtt |
37437117 |
T |
|
| Q |
384 |
gcaacaatctgaaaggtgaattacaacctaatagcacaatctacaagcttagacaccttcaacaactcaacttggcttttaatcatttttctggatcttc |
483 |
Q |
| |
|
||||||||||||||||||||||||| || |||||||| |||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
37437116 |
gcaacaatctgaaaggtgaattacatcccaatagcaccatctttcagcttaaacaccttcaacaactcaacttggcttttaatcatttttctgagtcttc |
37437017 |
T |
|
| Q |
484 |
aatgcctattggtattggcgatttagtgaatctcacacatctaaatttatcattttgtcacctcaagagtagtactccctccacaatctctcatttgtca |
583 |
Q |
| |
|
||| |||||||||||| | ||||||||||| |||||||||||||| |||||| ||| |||||| ||| || ||| |||| |||||||||||||||| |
|
|
| T |
37437016 |
aatacctattggtattagtgatttagtgaaactcacacatctaaacctatcatactgtgacctcagtggtaatattccttccaaaatctctcatttgtca |
37436917 |
T |
|
| Q |
584 |
aaattaatatcacttgatcttagcagttatagttactcgaacatggaaattaatccgttgacatggaagaaactcattcgtaatgctactaatttaaggg |
683 |
Q |
| |
|
|||||| |||| |||||||||| || |||| || | ||||| | ||||| || |||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
37436916 |
aaattagtatcccttgatcttaacaattatgattctt------tggaactcaatccattcgcatggaagaaactcattcataatgctactaatttaaggg |
37436823 |
T |
|
| Q |
684 |
agcttcatttggatagagtgaatatgtcttcaatcagagagagctctttgttgatgctaaagaatttgtcatcctctttggtttctcttagtctaccaaa |
783 |
Q |
| |
|
|||||||| || || ||||||| ||||||||||| ||||||||||||||| | || ||| |||||||||||| ||||||||||||||||||||| || |
|
|
| T |
37436822 |
agcttcatctgaatggagtgaaaatgtcttcaattggagagagctctttgtcgttgttaacgaatttgtcatcttctttggtttctcttagtctagcatc |
37436723 |
T |
|
| Q |
784 |
aactgagttgcaaggaaatttgtcaagtgacatcctctctttacctaatcttcaaagattggatttgtcatctaattataaccttcgtggtcaacttcca |
883 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||| |||||||||||||| |
|
|
| T |
37436722 |
cactcagttgcaaggaaatttgtcaagtgacatcctctctttacctaatcttcaaagattggatttgtcatttaatcaaaaccttagtggtcaacttcca |
37436623 |
T |
|
| Q |
884 |
aagtccaactggagcactcctc |
905 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
37436622 |
aagtccaactggagcactcctc |
37436601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 269 - 905
Target Start/End: Original strand, 37399451 - 37400078
Alignment:
| Q |
269 |
tgttcgtctttttcttttaagacagaatcttggaaaaccggcacagattgttgcgagtgggatggtgtcacgtgcgacaccgtgtctgatcacgtgattg |
368 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||| ||| | | ||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||| |
|
|
| T |
37399451 |
tgttcctctttttctttcaagacagaatcttgggaaaacagtacagattgttgtgagtgggatggtgtcacgtgcgacaccatgtcagatcacgtgattg |
37399550 |
T |
|
| Q |
369 |
gtttggatctcagttgcaacaatctgaaaggtgaattacaacctaatagcacaatctacaagcttagacaccttcaacaactcaacttggcttttaatca |
468 |
Q |
| |
|
|| |||| |||||||||||||| || |||||||||||||| || ||||||| |||| |||||||||||||||||||||| || |||||||||||| | |
|
|
| T |
37399551 |
gtctggacctcagttgcaacaaactaaaaggtgaattacatcccaatagcatcatctttcagcttagacaccttcaacaacttaatttggcttttaataa |
37399650 |
T |
|
| Q |
469 |
tttttctggatcttcaatgcctattggtattggcgatttagtgaatctcacacatctaaatttatcattttgtcacctcaagagtagtactccctccaca |
568 |
Q |
| |
|
||||||||| |||||||||||||||||| |||| ||||||||||| ||||||||||||||| ||||| |||| ||||||| ||| || ||| |||||| |
|
|
| T |
37399651 |
tttttctgggtcttcaatgcctattggtgttggagatttagtgaaactcacacatctaaatacatcatattgtaacctcaatggtaatattccttccaca |
37399750 |
T |
|
| Q |
569 |
atctctcatttgtcaaaattaatatcacttgatcttagcagttatagttactcgaacatggaaattaatccgttgacatggaagaaactcattcgtaatg |
668 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| || | || |||||| || || | |||||||||||||||||||||| ||||| |
|
|
| T |
37399751 |
atctctcatttgtcaaaattagtatcacttgatcttagc--tttaactttgtcgaacttg-------attcattgacatggaagaaactcattcataatg |
37399841 |
T |
|
| Q |
669 |
ctactaatttaagggagcttcatttggatagagtgaatatgtcttcaatcagagagagctctttgttgatgctaaagaatttgtcatcctctttggtttc |
768 |
Q |
| |
|
|||||||||||||||||||||||||| ||| ||||| |||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
37399842 |
ctactaatttaagggagcttcatttgaatattgtgaacatgtcttccctcagagagagctctttgtcaatgctaaagaatttgtcatcctctttggtttc |
37399941 |
T |
|
| Q |
769 |
tcttagtctaccaaaaactgagttgcaaggaaatttgtcaagtgacatcctctctttacctaatcttcaaagattggatttgtcatctaattataacctt |
868 |
Q |
| |
|
|||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||| |
|
|
| T |
37399942 |
tcttagtctatcagaaactgagttgcaaggaaatttgtcaagtgacatcctctctttacctaatcttcaaagattggatttgtcatttaatcaaaacctt |
37400041 |
T |
|
| Q |
869 |
cgtggtcaacttccaaagtccaactggagcactcctc |
905 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
37400042 |
agtggtcaacttccaaagtccaactggagcactcctc |
37400078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 269 - 905
Target Start/End: Complemental strand, 37825425 - 37824789
Alignment:
| Q |
269 |
tgttcgtctttttcttttaagacagaatcttggaaaaccggcacagattgttgcgagtgggatggtgtcacgtgcgacaccgtgtctgatcacgtgattg |
368 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||| ||| | | ||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||| |
|
|
| T |
37825425 |
tgttcctctttttctttcaagacagaatcttgggaaaacagtacagattgttgtgagtgggatggtgtcacgtgcgacaccatgtcagatcacgtgattg |
37825326 |
T |
|
| Q |
369 |
gtttggatctcagttgcaacaatctgaaaggtgaattacaacctaatagcacaatctacaagcttagacaccttcaacaactcaacttggcttttaatca |
468 |
Q |
| |
|
|| |||| ||||||||||||||||| |||||||||||||| || |||||||| |||| |||||| ||||||||||||||||||||||||||||||| | |
|
|
| T |
37825325 |
gtctggacctcagttgcaacaatctaaaaggtgaattacatcccaatagcaccatctttcagcttaaacaccttcaacaactcaacttggcttttaatga |
37825226 |
T |
|
| Q |
469 |
tttttctggatcttcaatgcctattggtattggcgatttagtgaatctcacacatctaaatttatcattttgtcacctcaagagtagtactccctccaca |
568 |
Q |
| |
|
||||||| |||||||||||||||||| |||| ||||||||||| ||||||||||||||| ||||| ||| ||||||| ||| || ||| |||||| |
|
|
| T |
37825225 |
tttttctttgtcttcaatgcctattggtgttggagatttagtgaaactcacacatctaaatctatcaaaatgttacctcaatggtaatattccttccaca |
37825126 |
T |
|
| Q |
569 |
atctctcatttgtcaaaattaatatcacttgatcttagcagttatagttactcgaacatggaaattaatccgttgacatggaagaaactcattcgtaatg |
668 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| ||||| | | || | || || | ||| | || | |||||||||||||||| ||||| |
|
|
| T |
37825125 |
atctctcatttgtcaaaattagtatcacttgatctcagcagaaactggcacgtgggattgaaactcaattcattcatttggaagaaactcattcataatg |
37825026 |
T |
|
| Q |
669 |
ctactaatttaagggagcttcatttggatagagtgaatatgtcttcaatcagagagagctctttgttgatgctaaagaatttgtcatcctctttggtttc |
768 |
Q |
| |
|
|||||||||||||||| |||||| | || ||||||| |||||||||||| |||||||||| |||| |||||||||||||||||||||||||||||||| |
|
|
| T |
37825025 |
ctactaatttaagggatcttcatcttaatggagtgaacatgtcttcaatcggagagagctcattgtcaatgctaaagaatttgtcatcctctttggtttc |
37824926 |
T |
|
| Q |
769 |
tcttagtctaccaaaaactgagttgcaaggaaatttgtcaagtgacatcctctctttacctaatcttcaaagattggatttgtcatctaattataacctt |
868 |
Q |
| |
|
||||||||||| ||| |||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |
|
|
| T |
37824925 |
tcttagtctacgaaacactgtgttgcaaggaaatatatcaagtgacatcctctctttacctaatcttcaaagattggatttgtcatttaatcataacctt |
37824826 |
T |
|
| Q |
869 |
cgtggtcaacttccaaagtccaactggagcactcctc |
905 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
37824825 |
agtggtcaacttccaaagtccaactggagcactcctc |
37824789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 309; E-Value: 1e-173
Query Start/End: Original strand, 118 - 904
Target Start/End: Original strand, 37380802 - 37381600
Alignment:
| Q |
118 |
ttttacttttcacttgttcttgttattgctgcttactcattttacttcctacactttctcattgtgcagccaacatgatagctccgccttgttacaattc |
217 |
Q |
| |
|
|||||| ||||||||||||||||| ||| |||||||||||||||||||| |||||||||||||||||| ||||||||||| || ||||||||||| ||| |
|
|
| T |
37380802 |
ttttacctttcacttgttcttgttgttgttgcttactcattttacttcccacactttctcattgtgcaaccaacatgatacatctgccttgttacatttc |
37380901 |
T |
|
| Q |
218 |
aaacactcgttttctgtcaacacttcatctaaacccggt------tttctgtctatgtgttcgtctttttcttttaagacagaatcttggaaaaccggca |
311 |
Q |
| |
|
||| |||| |||||| ||||||||||||| ||| ||| | ||| | ||| ||||| |||||||||| |||| |||||||||||||| | |
|
|
| T |
37380902 |
aaaaactcattttctttcaacacttcatcgaaatccgatatacatttttggcctagatgttccactttttctttcaagatagaatcttggaaaaataata |
37381001 |
T |
|
| Q |
312 |
cagattgttgcgagtgggatggtgtcacgtgcgacaccgtgtctgatcacgtgattggtttggatctcagttgcaacaatctgaaaggtgaattacaacc |
411 |
Q |
| |
|
|||||||||| | |||||||||||||||||||||| || |||| ||||| ||||||||| |||| |||||||||| ||||||||| ||||||||||| || |
|
|
| T |
37381002 |
cagattgttgtgggtgggatggtgtcacgtgcgactccatgtcagatcatgtgattggtctggacctcagttgcagcaatctgaatggtgaattacatcc |
37381101 |
T |
|
| Q |
412 |
taatagcacaatctacaagcttagacaccttcaacaactcaacttggcttttaatcatttttctggatcttcaatgcctattggtattggcgatttagtg |
511 |
Q |
| |
|
||||||||||||| | |||||||||||||||||||||||||||||||||||||| |||||||||| |||| | ||| | || |||||| ||||||||| |
|
|
| T |
37381102 |
caatagcacaatcttccagcttagacaccttcaacaactcaacttggcttttaataatttttctgggtctttattgcatgttagtattgatgatttagtg |
37381201 |
T |
|
| Q |
512 |
aatctcacacatctaaatttatcattttgtcacctcaagagtagtactccctccacaatctctcatttgtcaaaattaatatcacttgatcttagcagtt |
611 |
Q |
| |
|
|||||||||||||||||| ||||| ||| |||| ||| || ||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
37381202 |
aatctcacacatctaaatctatcacactgttccctcggtggtaatattccctccacaatctctcatttgtcaaaattagtatcacttgatctcagcagtt |
37381301 |
T |
|
| Q |
612 |
atagttactcgaacatgg------aaattaatccgttgacatggaagaaactcattcgtaatgctactaatttaagggagcttcatttggatagagtgaa |
705 |
Q |
| |
|
|| | | | | | |||| || | ||||| |||||||||||||||||||||| ||||||||||||||||||||||||| ||| | | | ||||| |
|
|
| T |
37381302 |
attatgattggcatatgggattgaaactcaatccattgacatggaagaaactcattcataatgctactaatttaagggagctttctttaggttgtgtgaa |
37381401 |
T |
|
| Q |
706 |
tatgtcttcaatcagagagagctctttgttgatgctaaagaatttgtcatcctctttggtttctcttagtctaccaaaaactgagttgcaaggaaatttg |
805 |
Q |
| |
|
||||| || || |||| ||||||||| | |||||||||||||||||||||||||||||||||||| ||||| | |||||| |||||||||||||||| |
|
|
| T |
37381402 |
catgtcctctattagagcgagctctttatctatgctaaagaatttgtcatcctctttggtttctcttggtctaggagaaactgggttgcaaggaaatttg |
37381501 |
T |
|
| Q |
806 |
tcaagtgacatcctctctttacctaatcttcaaagattggatttgtcatctaattataaccttcgtggtcaacttccaaagtccaactggagcactcct |
904 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| | | ||||| ||||||||| | | || | |||||||||| || |||||||||||||||||| |
|
|
| T |
37381502 |
tcaagtgacatcctctctttacctaatctccaaacactagatttatcatctaataaatatctgagcagtcaacttccgaaatccaactggagcactcct |
37381600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 268 - 905
Target Start/End: Original strand, 37391584 - 37392224
Alignment:
| Q |
268 |
gtgttcgtctttttcttttaagacagaatcttggaaaaccggcacagattgttgcgagtgggatggtgtcacgtgcgacaccgtgtctgatcacgtgatt |
367 |
Q |
| |
|
|||||| ||||||||||| ||||||||||||||||||| | | ||| |||||||| |||||||||||||||||||||||||| |||| |||||||||||| |
|
|
| T |
37391584 |
gtgttcctctttttctttcaagacagaatcttggaaaaacagtacaaattgttgcaagtgggatggtgtcacgtgcgacaccatgtcagatcacgtgatt |
37391683 |
T |
|
| Q |
368 |
ggtttggatctcagttgcaacaatctgaaaggtgaattacaacctaatagcacaatctacaagcttagacaccttcaacaactcaacttggcttttaatc |
467 |
Q |
| |
|
| | || ||||||||||||||| |||| ||||| ||||| || |||||||| |||| ||||||||||||||||||||||||||||| |||| ||| |
|
|
| T |
37391684 |
gaactagacctcagttgcaacaatttgaatggtgatttacatcccaatagcactatctttcagcttagacaccttcaacaactcaacttgtctttaaatt |
37391783 |
T |
|
| Q |
468 |
atttttctggatcttcaatgcctattggtattggcgatttagtgaatctcacacatctaaatttatcattttgtcacctcaagagtagtactccctccac |
567 |
Q |
| |
|
||||| ||| |||||| ||| | |||||||||| |||||||||||||||||| |||||||| ||||| |||| |||||| ||| || ||||||||| |
|
|
| T |
37391784 |
ttttttttgggtcttcattgcatgttggtattggtgatttagtgaatctcacatatctaaatctatcaaattgttacctcagtggtaatattccctccac |
37391883 |
T |
|
| Q |
568 |
aatctctcatttgtcaaaattaatatcacttgatcttagcagttatagttac-tcgaaca-----tggaaattaatccgttgacatggaagaaactcatt |
661 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||| ||| | || | ||||| | || || || | ||||||||||||||||||||| |
|
|
| T |
37391884 |
aatctctcatttgtcaaaattagtatcacttgatcttagcaattaccggcacttggaacaacaactcaaacttgatacattgacatggaagaaactcatt |
37391983 |
T |
|
| Q |
662 |
cgtaatgctactaatttaagggagcttcatttggatagagtgaatatgtcttcaatcagagagagctctttgttgatgctaaagaatttgtcatcctctt |
761 |
Q |
| |
|
| ||||||||||||||||||||||||||||||| |||||||| |||||| ||| || |||||||||||||||| |||||||||||| |||||||||||| |
|
|
| T |
37391984 |
cataatgctactaatttaagggagcttcatttgaatagagtggatatgtattccattagagagagctctttgtctatgctaaagaatgtgtcatcctctt |
37392083 |
T |
|
| Q |
762 |
tggtttctcttagtctaccaaaaactgagttgcaaggaaatttgtcaagtgacatcctctctttacctaatcttcaaagattggatttgtcatctaatta |
861 |
Q |
| |
|
||||||||||||| ||| | ||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||| | ||||||||| ||| | |
|
|
| T |
37392084 |
tggtttctcttaggctaggagaaattgggttgcaaggaaatttgtcaagtgccatcctctctttacctaatcttcaaagactagatttgtca---aataa |
37392180 |
T |
|
| Q |
862 |
taaccttcgtggtcaacttccaaagtccaactggagcactcctc |
905 |
Q |
| |
|
| | ||| | ||| |||||||||| || |||||||||||||||| |
|
|
| T |
37392181 |
tgaacttagcggtaaacttccaaaatcaaactggagcactcctc |
37392224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 95 - 612
Target Start/End: Complemental strand, 37596037 - 37595517
Alignment:
| Q |
95 |
tccttttttattctattgccttattttacttttcacttgttcttgttattg---ctgcttactcattttacttcctacactttctcattgtgcagccaac |
191 |
Q |
| |
|
||||||||||||| ||||||||||||||| |||||||| |||||||| ||| |||||||||||||||||||||||||||||||||||||||| | ||| |
|
|
| T |
37596037 |
tccttttttattccattgccttattttacctttcactttttcttgttgttgttgctgcttactcattttacttcctacactttctcattgtgcaacaaac |
37595938 |
T |
|
| Q |
192 |
atgatagctccgccttgttacaattcaaacactcgttttctgtcaacacttcatctaaacccggttttctgt-ctatg--tgttcgtctttttcttttaa |
288 |
Q |
| |
|
|||| | ||| |||||||||||||||||| |||| ||||||||||||||||||||| ||||| | | || || || ||||| ||||||||||| || |
|
|
| T |
37595937 |
atgacaactctgccttgttacaattcaaaaactctttttctgtcaacacttcatctcaacccaat---ccgtactttggttgttcctctttttctttcaa |
37595841 |
T |
|
| Q |
289 |
gacagaatcttggaaaaccggcacagattgttgcgagtgggatggtgtcacgtgcgacaccgtgtctgatcacgtgattggtttggatctcagttgcaac |
388 |
Q |
| |
|
||||||||||||| ||| | | ||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||| |||| |||||||||||| |
|
|
| T |
37595840 |
gacagaatcttgggaaaacagtacagattgttgtgagtgggatggtgtcacgtgcgacaccatgtcagatcacgtgattggtctggacctcagttgcaac |
37595741 |
T |
|
| Q |
389 |
aatctgaaaggtgaattacaacctaatagcacaatctacaagcttagacaccttcaacaactcaacttggcttttaatcatttttctggatcttcaatgc |
488 |
Q |
| |
|
||||| |||||||||||||| || |||||||| |||| |||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||||| |
|
|
| T |
37595740 |
aatcttaaaggtgaattacatcccaatagcaccatctttcagcttaaacaccttcaacaactcaacttggcttttaataatttttctgagtcttcaatgc |
37595641 |
T |
|
| Q |
489 |
ctattggtattggcgatttagtgaatctcacacatctaaatttatcattttgtcacctcaagagtagtactccctccacaatctctcatttgtcaaaatt |
588 |
Q |
| |
|
|||||||| |||| ||||||||||| ||||||||||||||| |||||| |||| |||||| ||| || ||| |||||||||||||||||||||||||| |
|
|
| T |
37595640 |
ctattggtgttggagatttagtgaaactcacacatctaaatctatcatattgttacctcagtggtaatattccttccacaatctctcatttgtcaaaatt |
37595541 |
T |
|
| Q |
589 |
aatatcacttgatcttagcagtta |
612 |
Q |
| |
|
| |||||||||||||||||||||| |
|
|
| T |
37595540 |
agtatcacttgatcttagcagtta |
37595517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 87 - 903
Target Start/End: Complemental strand, 37430469 - 37429637
Alignment:
| Q |
87 |
aaatgcggtccttttttattctattgccttattttacttttcacttgttcttgttattgctgcttactcattttacttcctacactttctcattgtgcag |
186 |
Q |
| |
|
||||| ||||||||| | ||||||| |||||| || | ||||||||||||||||| ||||||| |||| |||||||||||| || || ||| |||||| |
|
|
| T |
37430469 |
aaatggggtccttttgttttctatttccttatcttgcctttcacttgttcttgttgatgctgctaactctttttacttcctatacattttcaatgtgcaa |
37430370 |
T |
|
| Q |
187 |
ccaacatgatagctccgccttgttacaattcaaacactcgttttctgtcaacacttcatctaaacccggttttctgtctatgtgttcgtctttttctttt |
286 |
Q |
| |
|
|| ||||| || || ||||||||||||||||| | || |||| | |||||||||||||| |||| |||||| |||| ||||| ||||||||||| |
|
|
| T |
37430369 |
gcatcatgacagttctgccttgttacaattcaagaattcattttttatcaacacttcatctcaacctggtttttggtctcactgttcctctttttctttc |
37430270 |
T |
|
| Q |
287 |
aagacagaatcttggaaaaccggcacagattgttgcgagtgggatggtgtcacgtgcgacaccgtgtctgatcacgtgattggtttggatctcagttgca |
386 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | ||| ||| | ||||||||| |||| || ||||||| |
|
|
| T |
37430269 |
aagacagaatcttggaaaaccggcacagattgctgcgagtgggatggtgtcacgtgcgacatcatgtacgattatgtgattggtctggaccttagttgca |
37430170 |
T |
|
| Q |
387 |
acaatctgaaaggtgaattacaacctaatagcacaatctacaagcttagacaccttcaacaactcaacttggcttttaatcatttttctggatcttcaat |
486 |
Q |
| |
|
|||||||||| ||||||||| | |||||||| |||| | |||| ||||||||||||||||||||||||||||||| |||||| || ||||| | |
|
|
| T |
37430169 |
acaatctgaacggtgaattagcggccaatagcaccatctttcaacttaaacaccttcaacaactcaacttggcttttaatgattttttcgggtcttcggt |
37430070 |
T |
|
| Q |
487 |
gcctattggtattggcgatttagtgaatctcacacatctaaatttatcattttgtcacctcaagagtagtactccctccacaatctctcatttgtcaaaa |
586 |
Q |
| |
|
|| | ||||||||| ||| ||||||| ||||||||||||||| ||||| | | | ||| || | |||||||||||||||||||||||||| |
|
|
| T |
37430069 |
gcatgctggtattggtgatctagtgaagctcacacatctaaatctatcaaacaccggcattagtggtaatatttcctccacaatctctcatttgtcaaaa |
37429970 |
T |
|
| Q |
587 |
ttaatatcacttgatcttagcagttatagttactcgaacatg------------gaaattaatccgttgacatggaagaaactcattcgtaatgctacta |
674 |
Q |
| |
|
||| |||||||||||||||||||||||||||||| ||||||| ||| || ||| | ||||||||||||||||||| ||||||||||| |
|
|
| T |
37429969 |
ttagtatcacttgatcttagcagttatagttactggaacatggaacagaaactcgaacttggtccactcacatggaagaaactcattcttaatgctacta |
37429870 |
T |
|
| Q |
675 |
atttaagggagcttcatttggatagagtgaatatgtcttcaatcagagagagctctttgttgatgctaaagaatttgtcatcctctttggtttctcttag |
774 |
Q |
| |
|
|||||||||||||||||||| ||| ||| |||| |||| |||||||||||| ||||||| | |||||| |||||| || ||||||||||| ||||| |
|
|
| T |
37429869 |
atttaagggagcttcatttgaatactgtggatatatctttaatcagagagagatctttgtcgctgctaaggaatttatcgtcctctttggtcgctcttga |
37429770 |
T |
|
| Q |
775 |
tctaccaaaaactgagttgcaaggaaatttgtca----agtgacatcctctctttacctaatcttcaaagattggatttgtcatctaattataaccttcg |
870 |
Q |
| |
|
|||| ||| |||| ||||||| |||||| || |||||||||||||||||||| ||||||||| | | |||||||| | |||| | ||||| | |
|
|
| T |
37429769 |
tctatcaatcactggcttgcaagaaaattttccaagctagtgacatcctctctttaccaaatcttcaagaactagatttgtcttttaatgaggaccttag |
37429670 |
T |
|
| Q |
871 |
tggtcaacttccaaagtccaactggagcactcc |
903 |
Q |
| |
|
||| |||||||| |||||||||||||||||| |
|
|
| T |
37429669 |
tgggaaacttccactgtccaactggagcactcc |
37429637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 179; E-Value: 4e-96
Query Start/End: Original strand, 647 - 905
Target Start/End: Complemental strand, 37595476 - 37595218
Alignment:
| Q |
647 |
tggaagaaactcattcgtaatgctactaatttaagggagcttcatttggatagagtgaatatgtcttcaatcagagagagctctttgttgatgctaaaga |
746 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||| |||| ||| |||||||||| || | ||||||||||||| |||||||||| |
|
|
| T |
37595476 |
tggaagaaactcattcataatgctactaatttaagggagcttcatttgaatagtgtggatatgtcttccattacggagagctctttgtccatgctaaaga |
37595377 |
T |
|
| Q |
747 |
atttgtcatcctctttggtttctcttagtctaccaaaaactgagttgcaaggaaatttgtcaagtgacatcctctctttacctaatcttcaaagattgga |
846 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37595376 |
atttttcatcctctttggtttctcttcttctacgaaacactgggttgcaaggaaatttgtcaagtgacatcctctctttacctaatcttcaaagattgga |
37595277 |
T |
|
| Q |
847 |
tttgtcatctaattataaccttcgtggtcaacttccaaagtccaactggagcactcctc |
905 |
Q |
| |
|
|||||||| |||| |||||||| |||||||||||||||||||||||| ||||||||||| |
|
|
| T |
37595276 |
tttgtcatttaatgataaccttagtggtcaacttccaaagtccaacttgagcactcctc |
37595218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 162; E-Value: 5e-86
Query Start/End: Original strand, 87 - 829
Target Start/End: Original strand, 37411754 - 37412504
Alignment:
| Q |
87 |
aaatgcggtccttttttattctattgccttattttacttttcacttgttcttgttattgctgcttactcattttacttcctacactttctcattgtgcag |
186 |
Q |
| |
|
||||| |||||| |||| |||||||| | |||||||| ||||||||||||||||| ||||| |||||||||||||||||||||| |||||||| |||| |
|
|
| T |
37411754 |
aaatggggtcctgttttgttctattgtcctattttacctttcacttgttcttgttgctgctgtttactcattttacttcctacaccttctcattatgcaa |
37411853 |
T |
|
| Q |
187 |
ccaacatgatagctccgccttgttacaattcaaacactcgttttctgtcaa---cacttcatctaaacccggttttctgtctatgtgttcgtctttttct |
283 |
Q |
| |
|
| | ||||| |||| ||||||||||||||||| ||| || |||||| || ||||||| | | | | || | ||| ||||| ||||||||| |
|
|
| T |
37411854 |
ctatcatgacagctttgccttgttacaattcaagaacttacttcttgtcaatggcatttcatctcagcatgatatttggcctagttgttcctctttttct |
37411953 |
T |
|
| Q |
284 |
tttaagacagaatcttggaaaaccggcacagattgttgcgagtgggatggtgtcacgtgcgacaccgtgtctgatcacgtgattggtttggatctcagtt |
383 |
Q |
| |
|
|| || ||||| |||||||||| |||||||||||||||||| ||||||||| |||||||||||| | ||||| |||||||||||||| || || | |
|
|
| T |
37411954 |
ttgaaaacagattcttggaaaaataatacagattgttgcgagtggtatggtgtcatgtgcgacaccgttttggatcatgtgattggtttggaccttaggt |
37412053 |
T |
|
| Q |
384 |
gcaacaatctgaaaggtgaattacaacctaatagcacaatctacaagcttagacaccttcaacaactcaacttggcttttaatcatttttctggatcttc |
483 |
Q |
| |
|
|||||||||| |||||||||||||| | |||||||| |||| ||| |||| ||||||||||| ||||||| ||||||||||| |||||| | ||||| |
|
|
| T |
37412054 |
gcaacaatcttaaaggtgaattacatctcaatagcactatcttcaaacttaaacaccttcaacgactcaac-tggcttttaatgattttttcaggtcttc |
37412152 |
T |
|
| Q |
484 |
aatgcctattggtattggcgatttagtgaatctcacacatctaaatttatcattttgtcacctcaagagtagtactccctccacaatctctcatttgtca |
583 |
Q |
| |
|
||| | || |||| | ||||| ||||||||||||||||| ||||||||| | ||| ||| || ||| |||||||||||||| |||||| |
|
|
| T |
37412153 |
ggtgcatgatgatattagtgatttggtgaatctcacacatcttaatttatcaaacactggaatcatttgtaatattccttccacaatctctcacttgtca |
37412252 |
T |
|
| Q |
584 |
aaattaatatcacttgatcttagcagttatagttac-tcgaaca-----tggaaattaatccgttgacatggaagaaactcattcgtaatgctactaatt |
677 |
Q |
| |
|
|||||| |||||||||||||||||||| | | ||| | || || | || || |||| || ||||||||| ||||||||| ||||| ||| |||| |
|
|
| T |
37412253 |
aaattagtatcacttgatcttagcagtaactgatacatggatcaaaaactcaaacttgatcccttcacatggaaggaactcattcataatgttacaaatt |
37412352 |
T |
|
| Q |
678 |
taagggagcttcatttggatagagtgaatatgtcttcaatcagagagagctctttgttgatgctaaagaatttgtcatcctctttggtttctcttagtct |
777 |
Q |
| |
|
|||| ||||||||| || |||| || |||||||||| |||||||||| ||||||| | ||||||||||||||||||||||| |||| ||||||||||| |
|
|
| T |
37412353 |
taagcgagcttcatctgaatagtgttgatatgtcttccatcagagagaattctttgtcgctgctaaagaatttgtcatcctctctggtctctcttagtct |
37412452 |
T |
|
| Q |
778 |
accaaaaactgagttgcaaggaaatttgtcaagtgacatcctctctttacct |
829 |
Q |
| |
|
| || ||| |||||||||||||| |||||||||| | |||||||||| |
|
|
| T |
37412453 |
agggaacactagtttgcaaggaaatttagcaagtgacattccctctttacct |
37412504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 87 - 252
Target Start/End: Original strand, 37391389 - 37391554
Alignment:
| Q |
87 |
aaatgcggtccttttttattctattgccttattttacttttcacttgttcttgttattgctgcttactcattttacttcctacactttctcattgtgcag |
186 |
Q |
| |
|
||||| ||||||| |||||| |||||||||||||||| |||||||||||| |||| ||| |||||||||||||||||||||| ||| |||||||||||| |
|
|
| T |
37391389 |
aaatggggtccttgtttattttattgccttattttacctttcacttgttcatgttgttgttgcttactcattttacttcctatactctctcattgtgcaa |
37391488 |
T |
|
| Q |
187 |
ccaacatgatagctccgccttgttacaattcaaacactcgttttctgtcaacacttcatctaaacc |
252 |
Q |
| |
|
|| ||||||||||| |||||| ||||||||||| |||| |||| ||||||||||||||| ||||| |
|
|
| T |
37391489 |
ccttcatgatagctctgccttgctacaattcaaaaactcattttttgtcaacacttcatcaaaacc |
37391554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 93 - 254
Target Start/End: Complemental strand, 37441650 - 37441491
Alignment:
| Q |
93 |
ggtccttttttattctattgccttattttacttttcacttgttcttgttattgctgcttactcattttacttcctacactttctcattgtgcagccaaca |
192 |
Q |
| |
|
|||||||||||||| |||||||||||||||| |||||| ||||||| || |||||||||||||||||||||||||| ||||||||| |||| | | |||| |
|
|
| T |
37441650 |
ggtccttttttattttattgccttattttacctttcacatgttcttcttgttgctgcttactcattttacttcctatactttctcactgtgaaacaaaca |
37441551 |
T |
|
| Q |
193 |
tgatagctccgccttgttacaattcaaacactcgttttctgtcaacacttcatctaaacccg |
254 |
Q |
| |
|
||| | ||| |||||||||||||||||| |||| |||| |||||||||||||| ||||||| |
|
|
| T |
37441550 |
tgacacctctgccttgttacaattcaaaaactc--tttcagtcaacacttcatcgaaacccg |
37441491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #17
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 130 - 252
Target Start/End: Complemental strand, 37825582 - 37825460
Alignment:
| Q |
130 |
cttgttcttgttattgctgcttactcattttacttcctacactttctcattgtgcagccaacatgatagctccgccttgttacaattcaaacactcgttt |
229 |
Q |
| |
|
|||||||||||| ||| || ||||||||||||||||||||||||||||| |||||| | ||||||| | ||| |||||||||||||||||| |||| ||| |
|
|
| T |
37825582 |
cttgttcttgttgttgttgattactcattttacttcctacactttctcactgtgcaacaaacatgacaactctgccttgttacaattcaaaaactctttt |
37825483 |
T |
|
| Q |
230 |
tctgtcaacacttcatctaaacc |
252 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
37825482 |
tctgtcaacacttcatctaaacc |
37825460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #18
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 37437525 - 37437445
Alignment:
| Q |
8 |
tttggtccttgccccttagtttcaggttatgtttcctatataaatagaggctaatcaattggtatatcctaaatcatcaaa |
88 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
37437525 |
tttggtccttgccccttagtttcaagttatgtttcctatataaatagaggctaatcatttggtatatcctaaatcatcaaa |
37437445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #19
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 8 - 78
Target Start/End: Complemental strand, 37698641 - 37698571
Alignment:
| Q |
8 |
tttggtccttgccccttagtttcaggttatgtttcctatataaatagaggctaatcaattggtatatccta |
78 |
Q |
| |
|
|||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37698641 |
tttggtcctttccccgtagtttcaggttatgtttcctatataaatagaggctaatcaattggtatatccta |
37698571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #20
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 125 - 252
Target Start/End: Original strand, 37399289 - 37399416
Alignment:
| Q |
125 |
tttcacttgttcttgttattgctgcttactcattttacttcctacactttctcattgtgcagccaacatgatagctccgccttgttacaattcaaacact |
224 |
Q |
| |
|
||||||||||||||||| ||| || |||||||||||||||| |||||||||||| | |||| ||| ||||| | ||| |||||||||||||||||| | | |
|
|
| T |
37399289 |
tttcacttgttcttgttgttgttgattactcattttacttcatacactttctcactatgcaaccatcatgacacctctgccttgttacaattcaaaaatt |
37399388 |
T |
|
| Q |
225 |
cgttttctgtcaacacttcatctaaacc |
252 |
Q |
| |
|
| |||| ||| |||||||||| ||||| |
|
|
| T |
37399389 |
cattttttgttgacacttcatcaaaacc |
37399416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 290; Significance: 1e-162; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 87 - 905
Target Start/End: Original strand, 16841327 - 16842142
Alignment:
| Q |
87 |
aaatgcggtccttttttattctattgccttattttacttttcacttgttcttgttattgctgcttactcattttacttcctacactttctcattgtgcag |
186 |
Q |
| |
|
||||| |||||||||||||| | ||||||| |||| | ||||||||||||| | ||||||||||||| |||||||| ||||||| ||||| |||| |
|
|
| T |
16841327 |
aaatggggtccttttttattgttttgccttgttttgcccttcacttgttctttgtgctgctgcttactcactttacttcacacactttgtcattctgcaa |
16841426 |
T |
|
| Q |
187 |
ccaacatgatagctccgccttgttacaattcaaacactcgttttctgtcaacacttcatctaaacccggttttctgtctatgtgttcgtctttttctttt |
286 |
Q |
| |
|
||||||||| ||||| || |||||||| |||||| |||| ||||||||||||||||||||| ||| | | || ||||| ||| |||||| |
|
|
| T |
16841427 |
ccaacatgacagctctgctttgttacatttcaaaaactcattttctgtcaacacttcatctcaacttgatatt---------tgttcctctacttctttc |
16841517 |
T |
|
| Q |
287 |
aagacagaatcttggaaaaccggcacagattgttgcgagtgggatggtgtcacgtgcgacaccgtgtctgatcacgtgattggtttggatctcagttgca |
386 |
Q |
| |
|
|||||| |||||||||||| ||| || ||||||||| ||||||||||||||||||| ||||| | || ||| ||||| |||||||||| |||||||||| |
|
|
| T |
16841518 |
aagacaaaatcttggaaaaacggtacggattgttgcaagtgggatggtgtcacgtgtgacactgaatcagattacgtggttggtttggacctcagttgca |
16841617 |
T |
|
| Q |
387 |
acaatctgaaaggtgaattacaacctaatagcacaatctacaagcttagacaccttcaacaactcaacttggcttttaatcatttttctggatcttcaat |
486 |
Q |
| |
|
||||| |||||||||||||||| || |||||||| ||| | || | ||||||||||||||||||||||||||||||||| |||||||||| |||||||| |
|
|
| T |
16841618 |
acaatttgaaaggtgaattacatcccaatagcactatcctccagttaagacaccttcaacaactcaacttggcttttaataatttttctgggtcttcaat |
16841717 |
T |
|
| Q |
487 |
gcctattggtattggcgatttagtgaatctcacacatctaaatttatcattttgtcacctcaagagtagtactccctccacaatctctcatttgtcaaaa |
586 |
Q |
| |
|
||||||||||||| |||||||||||||| |||||||||||||| |||||| ||| ||||||| || | || ||||||||||||||||||||||||| |
|
|
| T |
16841718 |
gcctattggtattagcgatttagtgaatatcacacatctaaatctatcatactgtgacctcaatggtgacattcactccacaatctctcatttgtcaaaa |
16841817 |
T |
|
| Q |
587 |
ttaatatcacttgatcttagcagttatagttactcgaacatgg------aaattaatccgttgacatggaagaaactcattcgtaatgctactaatttaa |
680 |
Q |
| |
|
||| |||| |||||||||||| |||| ||| || ||| || | ||| |||| || |||||||||||||||| |||||||||||| |||| |
|
|
| T |
16841818 |
ttagtatctcttgatcttagcggttactcgtacgaaaaagtgggattgaaactcaattcgttcacttggaagaaactcattcataatgctactaaattaa |
16841917 |
T |
|
| Q |
681 |
gggagcttcatttggatagagtgaatatgtcttcaatcagagagagctctttgttgatgctaaagaatttgtcatcctctttggtttctcttagtctacc |
780 |
Q |
| |
|
|||| ||| || | || ||||||| ||||||||||| ||||||||||||||| |||||||| ||||||||||||||||||||||||||| |||| | |
|
|
| T |
16841918 |
gggatctttatctaaatggagtgaacatgtcttcaattggagagagctctttgtcaatgctaaacaatttgtcatcctctttggtttctcttcatctagc |
16842017 |
T |
|
| Q |
781 |
aaaaactgagttgcaaggaaatttgtcaagtgacatcctctctttacctaatcttcaaagattggatttgtcatctaattataaccttcgtggtcaactt |
880 |
Q |
| |
|
||| |||| |||||||||||||||| ||||||||| |||||||| | |||||||||||| | ||||||||| |||| | ||||| ||||||||||| |
|
|
| T |
16842018 |
aaacactggtttgcaaggaaatttgttaagtgacatactctctttgtcaaatcttcaaagactagatttgtcacataatcaagaccttagtggtcaactt |
16842117 |
T |
|
| Q |
881 |
ccaaagtccaactggagcactcctc |
905 |
Q |
| |
|
||||| ||||||||||||||||||| |
|
|
| T |
16842118 |
ccaaaatccaactggagcactcctc |
16842142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 195; E-Value: 1e-105
Query Start/End: Original strand, 95 - 605
Target Start/End: Original strand, 24216193 - 24216703
Alignment:
| Q |
95 |
tccttttttattctattgccttattttacttttcacttgttcttgttattgctgcttactcattttacttcctacactttctcattgtgcagccaacatg |
194 |
Q |
| |
|
||||||||||||||| ||||| |||| || |||||||||||| |||| ||| ||||||||||||||||||| ||||||| |||||| |||| ||| |||| |
|
|
| T |
24216193 |
tccttttttattctaatgcctcatttgacctttcacttgttcatgttgttgttgcttactcattttacttcttacacttactcattctgcaaccatcatg |
24216292 |
T |
|
| Q |
195 |
atagctccgccttgttacaattcaaacactcgttttctgtcaacacttcatctaaacccggttttctgtctatgtgttcgtctttttcttttaagacaga |
294 |
Q |
| |
|
| || || || |||||||||||||| |||| ||| |||||||||||||||| |||||| | || |||||||||||| |||||| ||| | ||| || |
|
|
| T |
24216293 |
acagttctgcattgttacaattcaagaactcatttgttgtcaacacttcatctgaacccgatatttggtctatgtgttccactttttatttcaggacgga |
24216392 |
T |
|
| Q |
295 |
atcttggaaaaccggcacagattgttgcgagtgggatggtgtcacgtgcgacaccgtgtctgatcacgtgattggtttggatctcagttgcaacaatctg |
394 |
Q |
| |
|
||| ||||||| || |||||||||||||||||||||| |||| ||| ||||| ||| || ||||||||||| |||| || ||||||||||||||| |
|
|
| T |
24216393 |
atcctggaaaaatggtgcagattgttgcgagtgggatggggtcatgtgtgacactaggtcaaattacgtgattggtctggaccttagttgcaacaatctg |
24216492 |
T |
|
| Q |
395 |
aaaggtgaattacaacctaatagcacaatctacaagcttagacaccttcaacaactcaacttggcttttaatcatttttctggatcttcaatgcctattg |
494 |
Q |
| |
|
|||||||| ||||| || ||| |||| |||| ||||||||||||||||||||||||||||||||| |||||| |||||||| | |||||||||| | ||| |
|
|
| T |
24216493 |
aaaggtgagttacatccaaattgcactatcttcaagcttagacaccttcaacaactcaacttggcctttaataatttttcttggtcttcaatgcatgttg |
24216592 |
T |
|
| Q |
495 |
gtattggcgatttagtgaatctcacacatctaaatttatcattttgtcacctcaagagtagtactccctccacaatctctcatttgtcaaaattaatatc |
594 |
Q |
| |
|
| ||||| ||| |||||||||||||| |||||||||||||| ||| |||| | ||| || |||||||||||||||||| ||||||||| || | || |
|
|
| T |
24216593 |
ggattggtgatctagtgaatctcacatatctaaatttatcaagctgttaccttactggtaatattccctccacaatctctcagttgtcaaaactagtgtc |
24216692 |
T |
|
| Q |
595 |
acttgatctta |
605 |
Q |
| |
|
||||||||||| |
|
|
| T |
24216693 |
acttgatctta |
24216703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 129; E-Value: 3e-66
Query Start/End: Original strand, 644 - 903
Target Start/End: Original strand, 24216751 - 24217004
Alignment:
| Q |
644 |
acatggaagaaactcattcgtaatgctactaatttaagggagcttcatttggatagagtgaatatgtcttcaatcagagagagctctttgttgatgctaa |
743 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||| | || || ||||| | || |||||||||||||||||||||||| |||| |
|
|
| T |
24216751 |
acatggaagaaactcattcataatgctactaatttaagggagctttacctgaatggagtggacatatcttcaatcagagagagctctttg------ctaa |
24216844 |
T |
|
| Q |
744 |
agaatttgtcatcctctttggtttctcttagtctaccaaaaactgagttgcaaggaaatttgtcaagtgacatcctctctttacctaatcttcaaagatt |
843 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || |||| |||||||||||| ||||||||||||||||||||||||| |||||||||| | | |
|
|
| T |
24216845 |
agaatttgtcatcctctttggtttctcttagtctagcatccactggattgcaaggaaatatgtcaagtgacatcctctctttaccaaatcttcaaaaact |
24216944 |
T |
|
| Q |
844 |
ggatttgtcatctaattataaccttcgtggtcaacttccaaagtccaactggagcactcc |
903 |
Q |
| |
|
||||||||||| ||| | ||||||||||| || |||||| |||||||||||||||||| |
|
|
| T |
24216945 |
agatttgtcatcgaatcaagaccttcgtggtaaatttccaacgtccaactggagcactcc |
24217004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 22 - 88
Target Start/End: Original strand, 16841203 - 16841272
Alignment:
| Q |
22 |
cttagtttcaggttatgtttcctatataaata---gaggctaatcaattggtatatcctaaatcatcaaa |
88 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||||||||||| |
|
|
| T |
16841203 |
cttagtttcaggttatgtttcctatataaatagaggaggctaatcagttggtatatcgtaaatcatcaaa |
16841272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 275; Significance: 1e-153; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 275 - 905
Target Start/End: Complemental strand, 14554556 - 14553932
Alignment:
| Q |
275 |
tctttttcttttaagacagaatcttggaaaaccggcacagattgttgcgagtgggatggtgtcacgtgcgacaccgtgtctgatcacgtgattggtttgg |
374 |
Q |
| |
|
||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| | || | ||||||||||| | | |
|
|
| T |
14554556 |
tctttttctttcaagacagaatcttggaaaaagagtacagattgttgcgagtgggatggtgtcacgtgcgacaccatatcaggtcacgtgattgaactag |
14554457 |
T |
|
| Q |
375 |
atctcagttgcaacaatctgaaaggtgaattacaacctaatagcacaatctacaagcttagacaccttcaacaactcaacttggcttttaatcatttttc |
474 |
Q |
| |
|
| || |||||||||||| |||| ||||||||||| ||||||||||| |||| | |||||||||||||||||||||||||| | ||||||||| || ||| |
|
|
| T |
14554456 |
accttagttgcaacaatttgaatggtgaattacatcctaatagcactatcttccagcttagacaccttcaacaactcaacctagcttttaatgatatttt |
14554357 |
T |
|
| Q |
475 |
tggatcttcaatgcctattggtattggcgatttagtgaatctcacacatctaaatttatcattttgtcacctcaagagtagtactccctccacaatctct |
574 |
Q |
| |
|
||| |||||||||||| |||||||||||||||||||||| |||| ||||||||| |||| |||| |||| | ||| || ||| |||||||||||| |
|
|
| T |
14554356 |
tgggtcttcaatgcctcttggtattggcgatttagtgaaactcatgcatctaaatatatccaattgttaccttagtggtaatattccttccacaatctct |
14554257 |
T |
|
| Q |
575 |
catttgtcaaaattaatatcacttgatcttagcagttatagttactcgaacatggaaattaatccgttgacatggaagaaactcattcgtaatgctacta |
674 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| ||| ||| | | ||||||||||||| || |||||||| |||||||||| ||||||||||| |
|
|
| T |
14554256 |
catttgtcaaaattagtatcacttgatcttagca-tta-----actggttcttggaaattaatccatttacatggaataaactcattcataatgctacta |
14554163 |
T |
|
| Q |
675 |
atttaagggagcttcatttggatagagtgaatatgtcttcaatcagagagagctctttgttgatgctaaagaatttgtcatcctctttggtttctcttag |
774 |
Q |
| |
|
|||||||||| ||| || || || ||||||| |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14554162 |
atttaagggatctttatctgaatggagtgaacatgtcttccatcagagagagctctttgtcaatgctaaagaatttgtcatcctctttggtttctcttag |
14554063 |
T |
|
| Q |
775 |
tctaccaaaaactgagttgcaaggaaatttgtcaagtgacatcctctctttacctaatcttcaaagattggatttgtcatctaattataaccttcgtggt |
874 |
Q |
| |
|
|||| |||| || | ||||||||||||||||||||||||||| |||||||| || |||||||||| | | |||||| | |||| || ||| ||||| |
|
|
| T |
14554062 |
tctagcaaacaccgggttgcaaggaaatttgtcaagtgacatactctctttgccaaatcttcaaaaactagatttggtaggtaatgatggtcttagtggt |
14553963 |
T |
|
| Q |
875 |
caacttccaaagtccaactggagcactcctc |
905 |
Q |
| |
|
||||||||||| ||||||||||| ||||||| |
|
|
| T |
14553962 |
caacttccaaaatccaactggagtactcctc |
14553932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 95 - 252
Target Start/End: Complemental strand, 14554760 - 14554606
Alignment:
| Q |
95 |
tccttttttattctattgccttattttacttttcacttgttcttgttattgctgcttactcattttacttcctacactttctcattgtgcagccaacatg |
194 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| ||||| |||| |||||||||||||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
14554760 |
tccttttttattctattgccttattttacctttcactttttctt---attgttgcttactcattttacttcctatactttctcattgtgcaaccaacatg |
14554664 |
T |
|
| Q |
195 |
atagctccgccttgttacaattcaaacactcgttttctgtcaacacttcatctaaacc |
252 |
Q |
| |
|
| | ||| |||||||||||||||||| |||| ||||||||||||||||| || ||||| |
|
|
| T |
14554663 |
acacctctgccttgttacaattcaaaaactctttttctgtcaacacttcttcgaaacc |
14554606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University