View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2859-Insertion-28 (Length: 787)
Name: NF2859-Insertion-28
Description: NF2859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2859-Insertion-28 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
| [»] chr4 (2 HSPs) |
| |
|
| [»] scaffold0479 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 744; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 744; E-Value: 0
Query Start/End: Original strand, 8 - 787
Target Start/End: Complemental strand, 12934604 - 12933825
Alignment:
| Q |
8 |
acctgccatatccgcatctgtgtagcctttcaaaatcgaatctgatcctccaaagcataagcacttattagagcttcctttcagatacctcaagatccac |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12934604 |
acctgccatatccgcatctgtgtagcctttcaaaagcgaatctgatcctccaaagcataagcacttattagagcttcctttcagatacctcaagatccac |
12934505 |
T |
|
| Q |
108 |
ttcacagcttcccaatgttcttttcccggattggaaagaaacctgctaacaactccaactgcatgagcaatatctggcctggtgcaaaccattgcataca |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12934504 |
ttcacagcttcccaatgttcttttcccggattggaaagaaacctgctaacaactccaactgcatgagcaatatctggcctggtgcaaaccattgcataca |
12934405 |
T |
|
| Q |
208 |
tcaaactcccaactgctgaggagtaaggtattgcaaccatagcttctttttcatcttgactagtaggacaactcactctgctgagtttaaagtgattggc |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
12934404 |
tcaaactcccaactgctgaggagtaaggtattgcaaccatagcttctttttcatcttgactagtaggacaactcactctgttgagtttaaagtgattggc |
12934305 |
T |
|
| Q |
308 |
taacggcgtgctaactggtttagcacccttcatgttgaatctttctagaacccggtccacatactgttgttgtgacaaccatagctttctagcttttcgg |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12934304 |
taacggcgtgctaactggtttagcacccttcatgttgaatctttctagaacccggtccacatactgttgttgtgacaaccatagctttctagcttttcgg |
12934205 |
T |
|
| Q |
408 |
tctcgcaaaatcttcatgcctaagatttgctttgcagggcctaggtttttcatgtcaaaggattttgacaattccttcttcaaatcaccaatcatatcct |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12934204 |
tctcgcaaaatcttcatgcctaagatttgctttgcagggcctagatttttcatgtcaaaggattttgacaattccttcttcaaatcaccaatcatatcct |
12934105 |
T |
|
| Q |
508 |
cgtcttgccccactatcaacatatcatctacatataacagaaggatgatgaatttgttacctcgaaatgttttgacatatacacaatgatctgcatctgt |
607 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12934104 |
tgtcttgccccactatcaacatatcatctacatataacagaaggatgatgaatttgttacctcgaaatgttttgacatatacacaatgatctgcatctgt |
12934005 |
T |
|
| Q |
608 |
cttggcatattcctgactcatcatgaacgagtcaaatttcttataccattgtctaggtgcttgttttaatccatacaagctcttcttcaatttgcaaacc |
707 |
Q |
| |
|
||||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12934004 |
cttggtatattcatgactcatcatgaacgagtcaaatttcttataccattgtcttggtgcttgttttaatccatacaagctcttcttcaatttgcaaacc |
12933905 |
T |
|
| Q |
708 |
aggtgctcctttcgagtcttctcaaatccttctggttgaaccctgtagatctcttcatctaaatctccatgaagaaatgc |
787 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12933904 |
aagtgctcctttcgagtcttctcaaatccttctggttgaaccatgtagatctcttcatctaaatctccatgaagaaatgc |
12933825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 732; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 732; E-Value: 0
Query Start/End: Original strand, 8 - 787
Target Start/End: Complemental strand, 14177874 - 14177095
Alignment:
| Q |
8 |
acctgccatatccgcatctgtgtagcctttcaaaatcgaatctgatcctccaaagcataagcacttattagagcttcctttcagatacctcaagatccac |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14177874 |
acctgccatatccgcatctgtgtagcctttcaaaatcgaatttgatcctccaaagcataagcacttattagagcttcctttcagatacctcaagatccac |
14177775 |
T |
|
| Q |
108 |
ttcacagcttcccaatgttcttttcccggattggaaagaaacctgctaacaactccaactgcatgagcaatatctggcctggtgcaaaccattgcataca |
207 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14177774 |
ttcacagcttcccagtgttcttttcccggattggaaagaaacctgctaacaactccaactacatgagcaatatctggcctggtgcaaaccattgcataca |
14177675 |
T |
|
| Q |
208 |
tcaaactcccaactgctgaggagtaaggtattgcaaccatagcttctttttcatcttgactagtaggacaactcactctgctgagtttaaagtgattggc |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
14177674 |
tcaaactcccaactgctgaggagtaaggtattgcaaccatagcttctttttcatcttgactagtaggacaactcactatgctgagtttaaagtgattggc |
14177575 |
T |
|
| Q |
308 |
taacggcgtgctaactggtttagcacccttcatgttgaatctttctagaacccggtccacatactgttgttgtgacaaccatagctttctagcttttcgg |
407 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14177574 |
taacggtgtgctaactggtttagcacccttcatgttgaatctttctagaacccggtccacatactgttgttgtgacaaccatagctttctagcttttcgg |
14177475 |
T |
|
| Q |
408 |
tctcgcaaaatcttcatgcctaagatttgctttgcagggcctaggtttttcatgtcaaaggattttgacaattccttcttcaaatcaccaatcatatcct |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14177474 |
tctcgcaaaatcttcatgcctaagatttgctttgcagggcctagatttttcatgtcaaaggattttgacaattccttcttcaaatcaccaatcatatcct |
14177375 |
T |
|
| Q |
508 |
cgtcttgccccactatcaacatatcatctacatataacagaaggatgatgaatttgttacctcgaaatgttttgacatatacacaatgatctgcatctgt |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14177374 |
cgtcttgccccactatcaacatatcatctacatataacagaaggatgatgaatttgttacctcgaaatgttttgacatatacacaatgatctgcatctgt |
14177275 |
T |
|
| Q |
608 |
cttggcatattcctgactcatcatgaacgagtcaaatttcttataccattgtctaggtgcttgttttaatccatacaagctcttcttcaatttgcaaacc |
707 |
Q |
| |
|
||||| |||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14177274 |
cttggtatattcatgactcatcatgaacgagtcgaatttcttataccattgtcttggtgcttgttttaatccatacaagctcttcttcaatttgcaaacc |
14177175 |
T |
|
| Q |
708 |
aggtgctcctttcgagtcttctcaaatccttctggttgaaccctgtagatctcttcatctaaatctccatgaagaaatgc |
787 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14177174 |
aagtgctcctttcgagtcttctcaaatccttctggttgaaccatgtagatctcttcatctaaatctccatgaagaaatgc |
14177095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 722; E-Value: 0
Query Start/End: Original strand, 8 - 787
Target Start/End: Original strand, 28607999 - 28608780
Alignment:
| Q |
8 |
acctgccatatccgcatctgtgtagcctttcaaaatcgaatctgatcctccaaagcataagcacttattagagcttcctttcagatacctcaagatccac |
107 |
Q |
| |
|
|||||||||||| |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28607999 |
acctgccatatcagcatctgtgtaggctttcaaaatcgaatttgatcctccaaagcataagcacttattagagcttcctttcagatacctcaagatccac |
28608098 |
T |
|
| Q |
108 |
ttcacagcttcccaatgttctttt-cccggattggaaagaaacctgctaacaactccaactgcatgagcaatatctggcctggtgcaaaccattgcatac |
206 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28608099 |
ttcacagcttcccaatgttctttttcccggattggaaagaaacctgctaacaactccaactgcatgagcaatatctggcctggtgcaaaccattgcatac |
28608198 |
T |
|
| Q |
207 |
atcaaactcccaactgctgaggagtaaggtattgcaaccatagcttctttt-tcatcttgactagtaggacaactcactctgctgagtttaaagtgattg |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28608199 |
atcaaactcccaactgctgaggagtaaggtattgcaaccatagcttcttttttcatcttgactagtaggacaactcactctgctgagtttaaagtgattg |
28608298 |
T |
|
| Q |
306 |
gctaacggcgtgctaactggtttagcacccttcatgttgaatctttctagaacccggtccacatactgttgttgtgacaaccatagctttctagcttttc |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28608299 |
gctaacggcgtgctaactggtttagcacccttcatgttgaatctttctagaacccggtccacatactgttgttgtgacaaccatagctttctagcttttc |
28608398 |
T |
|
| Q |
406 |
ggtctcgcaaaatcttcatgcctaagatttgctttgcagggcctaggtttttcatgtcaaaggattttgacaattccttcttcaaatcaccaatcatatc |
505 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28608399 |
ggtctcgcaaaatcttcatgcctaagatttgctttgcagggcctagatttttcatgtcaaaggattttgacaattccttcttcaaatcaccaatcatatc |
28608498 |
T |
|
| Q |
506 |
ctcgtcttgccccactatcaacatatcatctacatataacagaaggatgatgaatttgttacctcgaaatgttttgacatatacacaatgatctgcatct |
605 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28608499 |
ctcgtcttgccccactatcaacatatcatctacatataacagaatgatgatgaatttgttacctcgaaatgttttgacatatacacaatgatctgcatct |
28608598 |
T |
|
| Q |
606 |
gtcttggcatattcctgactcatcatgaacgagtcaaatttcttataccattgtctaggtgcttgttttaatccatacaagctcttcttcaatttgcaaa |
705 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28608599 |
gtcttggtatattcatgactcatcatgaacgagtcaaatttcttataccattgtcttggtgcttgttttaatccatacaagctcttcttcaatttgcaaa |
28608698 |
T |
|
| Q |
706 |
ccaggtgctcctttcgagtcttctcaaatccttctggttgaaccctgtagatctcttcatctaaatctccatgaagaaatgc |
787 |
Q |
| |
|
||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28608699 |
ccaagtgctcctttcgagtcttcttaaatccttctggttgaaccatgtagatctcttcatctaaatctccatgaagaaatgc |
28608780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 655; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 655; E-Value: 0
Query Start/End: Original strand, 8 - 782
Target Start/End: Complemental strand, 15300390 - 15299616
Alignment:
| Q |
8 |
acctgccatatccgcatctgtgtagcctttcaaaatcgaatctgatcctccaaagcataagcacttattagagcttcctttcagatacctcaagatccac |
107 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15300390 |
acctgccatatccgcatatgtgtagcctttcaaaatcgaatctgatcctccaaagcataagcacttattagagcttcctttcagatacctcaagatccac |
15300291 |
T |
|
| Q |
108 |
ttcacagcttcccaatgttcttttcccggattggaaagaaacctgctaacaactccaactgcatgagcaatatctggcctggtgcaaaccattgcataca |
207 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15300290 |
ttcacaacttcccaatgttcttttcccggattggaaagaaacctgctaacaactccaactgcatgagcaatatctggcctggtgcaaaccattgcataca |
15300191 |
T |
|
| Q |
208 |
tcaaactcccaactgctgaggagtaaggtattgcaaccatagcttctttttcatcttgactagtaggacaactcactctgctgagtttaaagtgattggc |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || ||||||||| ||||| ||||||||||||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
15300190 |
tcaaactcccaactgctgaggagtaaggtatttcagccatagcttgttttttatcttgactagtaggacaacttactctactgagtttaaagtgattggc |
15300091 |
T |
|
| Q |
308 |
taacggcgtgctaactggtttagcacccttcatgttgaatctttctagaacccggtccacatactgttgttgtgacaaccatagctttctagcttttcgg |
407 |
Q |
| |
|
|||||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||| ||| |
|
|
| T |
15300090 |
taacggcgtgctaactagtttagcaccctttatgttgaatctttctagaacccgttccacttactgttgttgtgacaaccatagctttctagatttccgg |
15299991 |
T |
|
| Q |
408 |
tctcgcaaaatcttcatgcctaagatttgctttgcagggcctaggtttttcatgtcaaaggattttgacaattccttcttcaaatcaccaatcatatcct |
507 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| || |||||||||||||||||||||| |
|
|
| T |
15299990 |
tctcgcaaagtcttcatgcctaagatttgctttgcagggcctagatttttcatgtcgaaggattttgacaattcatttttcaaatcaccaatcatatcct |
15299891 |
T |
|
| Q |
508 |
cgtcttgccccactatcaacatatcatctacatataacagaaggatgatgaatttgttacctcgaaatgttttgacatatacacaatgatctgcatctgt |
607 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
15299890 |
cgtcttgccccactatcaacttatcatctacatataacagaaggatgataaatttgttacctcgaaatattttgacatatacacaatgatctgcatctgt |
15299791 |
T |
|
| Q |
608 |
cttggcatattcctgactcatcatgaacgagtcaaatttcttataccattgtctaggtgcttgttttaatccatacaagctcttcttcaatttgcaaacc |
707 |
Q |
| |
|
||||| |||||| ||||||||||||||||||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
15299790 |
cttggtatattcatgactcatcatgaacgagtaaaatttcttataccattgtcttggtgcttgtcttaatccatacaagctcttcttcaatttgcaaacc |
15299691 |
T |
|
| Q |
708 |
aggtgctcctttcgagtcttctcaaatccttctggttgaaccctgtagatctcttcatctaaatctccatgaaga |
782 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |
|
|
| T |
15299690 |
aagtgctcctttcgagtcttctcaaatccttctggttgaaccatgtagatctcttcatctaaatatccatgaaga |
15299616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 90 - 226
Target Start/End: Complemental strand, 6692801 - 6692665
Alignment:
| Q |
90 |
agatacctcaagatccacttcacagcttcccaatgttcttttcccggattggaaagaaacctgctaacaactccaactgcatgagcaatatctggcctgg |
189 |
Q |
| |
|
||||||||||| ||||| || || ||||||||||| |||| || ||||| || | |||||||||||||||||| |||||||| |||| |||||||| | |
|
|
| T |
6692801 |
agatacctcaaaatccatttaaccgcttcccaatgagctttacctggatttgacataaacctgctaacaactcccactgcatggccaatgtctggccttg |
6692702 |
T |
|
| Q |
190 |
tgcaaaccattgcatacatcaaactcccaactgctga |
226 |
Q |
| |
|
| ||||||||||| ||||||||||| |||| |||||| |
|
|
| T |
6692701 |
tacaaaccattgcgtacatcaaacttccaattgctga |
6692665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 165 - 211
Target Start/End: Original strand, 33415690 - 33415736
Alignment:
| Q |
165 |
actgcatgagcaatatctggcctggtgcaaaccattgcatacatcaa |
211 |
Q |
| |
|
||||||||||| |||||||| || ||||||||||||||||||||||| |
|
|
| T |
33415690 |
actgcatgagctatatctggtctagtgcaaaccattgcatacatcaa |
33415736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 639 - 694
Target Start/End: Complemental strand, 6692255 - 6692200
Alignment:
| Q |
639 |
tcaaatttcttataccattgtctaggtgcttgttttaatccatacaagctcttctt |
694 |
Q |
| |
|
||||| ||| ||||||||||||| || |||||||||| ||||||||||||||||| |
|
|
| T |
6692255 |
tcaaacttcatataccattgtcttggagcttgttttaggccatacaagctcttctt |
6692200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 61; Significance: 9e-26; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 90 - 226
Target Start/End: Original strand, 796020 - 796156
Alignment:
| Q |
90 |
agatacctcaagatccacttcacagcttcccaatgttcttttcccggattggaaagaaacctgctaacaactccaactgcatgagcaatatctggcctgg |
189 |
Q |
| |
|
||||||||||| ||||| || || ||||||||||| |||| || ||||| || | |||||||||||||||||| |||||||| |||| |||||||| | |
|
|
| T |
796020 |
agatacctcaaaatccatttaaccgcttcccaatgagctttacctggatttgacataaacctgctaacaactcccactgcatggccaatgtctggccttg |
796119 |
T |
|
| Q |
190 |
tgcaaaccattgcatacatcaaactcccaactgctga |
226 |
Q |
| |
|
| ||||||||||||||||||||||| |||| |||||| |
|
|
| T |
796120 |
tacaaaccattgcatacatcaaacttccaattgctga |
796156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 90 - 226
Target Start/End: Complemental strand, 8273768 - 8273632
Alignment:
| Q |
90 |
agatacctcaagatccacttcacagcttcccaatgttcttttcccggattggaaagaaacctgctaacaactccaactgcatgagcaatatctggcctgg |
189 |
Q |
| |
|
||||||||||| ||||| || || ||||||||||| |||| || ||||| || | |||||||||||||||||| |||||||| |||| |||||||| | |
|
|
| T |
8273768 |
agatacctcaaaatccatttaaccgcttcccaatgagctttacctggatttgacataaacctgctaacaactcccactgcatggccaatgtctggccttg |
8273669 |
T |
|
| Q |
190 |
tgcaaaccattgcatacatcaaactcccaactgctga |
226 |
Q |
| |
|
| ||||||||||||||||||||||| |||| |||||| |
|
|
| T |
8273668 |
tacaaaccattgcatacatcaaacttccaattgctga |
8273632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 639 - 694
Target Start/End: Original strand, 796566 - 796621
Alignment:
| Q |
639 |
tcaaatttcttataccattgtctaggtgcttgttttaatccatacaagctcttctt |
694 |
Q |
| |
|
||||| ||| ||||||||||||| || |||||||||| ||||||||||||||||| |
|
|
| T |
796566 |
tcaaacttcatataccattgtcttggagcttgttttaggccatacaagctcttctt |
796621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 639 - 694
Target Start/End: Complemental strand, 8273261 - 8273206
Alignment:
| Q |
639 |
tcaaatttcttataccattgtctaggtgcttgttttaatccatacaagctcttctt |
694 |
Q |
| |
|
||||| ||| ||||||||||||| || |||||||||| ||||||||||||||||| |
|
|
| T |
8273261 |
tcaaacttcatataccattgtcttggagcttgttttaggccatacaagctcttctt |
8273206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 9e-26; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 90 - 226
Target Start/End: Complemental strand, 19944751 - 19944615
Alignment:
| Q |
90 |
agatacctcaagatccacttcacagcttcccaatgttcttttcccggattggaaagaaacctgctaacaactccaactgcatgagcaatatctggcctgg |
189 |
Q |
| |
|
||||||||||| ||||| || || ||||||||||| |||| || ||||| || | |||||||||||||||||| |||||||| |||| |||||||| | |
|
|
| T |
19944751 |
agatacctcaaaatccatttaaccgcttcccaatgagctttacctggatttgacataaacctgctaacaactcccactgcatggccaatgtctggccttg |
19944652 |
T |
|
| Q |
190 |
tgcaaaccattgcatacatcaaactcccaactgctga |
226 |
Q |
| |
|
| ||||||||||||||||||||||| |||| |||||| |
|
|
| T |
19944651 |
tacaaaccattgcatacatcaaacttccaattgctga |
19944615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 639 - 694
Target Start/End: Complemental strand, 19944205 - 19944150
Alignment:
| Q |
639 |
tcaaatttcttataccattgtctaggtgcttgttttaatccatacaagctcttctt |
694 |
Q |
| |
|
||||| ||| ||||||||||||| || |||||||||| ||||||||||||||||| |
|
|
| T |
19944205 |
tcaaacttcatataccattgtcttggagcttgttttaggccatacaagctcttctt |
19944150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 90 - 208
Target Start/End: Original strand, 54968395 - 54968513
Alignment:
| Q |
90 |
agatacctcaagatccacttcacagcttcccaatgttcttttcccggattggaaagaaacctgctaacaactccaactgcatgagcaatatctggcctgg |
189 |
Q |
| |
|
||||||||||| ||||| |||||||| | |||||| |||||||| ||||| || || || || || |||||||| || |||| |||||| ||||| || | |
|
|
| T |
54968395 |
agatacctcaatatccatttcacagcattccaatgctcttttcctggattcgacaggaatctactcacaactcctaccgcataagcaatgtctggtcttg |
54968494 |
T |
|
| Q |
190 |
tgcaaaccattgcatacat |
208 |
Q |
| |
|
||||||||||||| ||||| |
|
|
| T |
54968495 |
tgcaaaccattgcgtacat |
54968513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 751 - 784
Target Start/End: Complemental strand, 50060113 - 50060080
Alignment:
| Q |
751 |
tgtagatctcttcatctaaatctccatgaagaaa |
784 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| |
|
|
| T |
50060113 |
tgtagatctcttcctctaaatctccatgaagaaa |
50060080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0479 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0479
Description:
Target: scaffold0479; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 90 - 208
Target Start/End: Complemental strand, 1752 - 1634
Alignment:
| Q |
90 |
agatacctcaagatccacttcacagcttcccaatgttcttttcccggattggaaagaaacctgctaacaactccaactgcatgagcaatatctggcctgg |
189 |
Q |
| |
|
||||||||||| ||||| |||||| | | |||||| |||||||| ||||| || || || || || |||||||| || |||| |||||| ||||| || | |
|
|
| T |
1752 |
agatacctcaatatccatttcacatcattccaatgctcttttcctggattcgacaggaatctactcacaactcctaccgcataagcaatgtctggtcttg |
1653 |
T |
|
| Q |
190 |
tgcaaaccattgcatacat |
208 |
Q |
| |
|
||||||||||||| ||||| |
|
|
| T |
1652 |
tgcaaaccattgcgtacat |
1634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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