View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2859-Insertion-29 (Length: 529)
Name: NF2859-Insertion-29
Description: NF2859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2859-Insertion-29 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 157; Significance: 3e-83; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 354 - 529
Target Start/End: Complemental strand, 6452233 - 6452057
Alignment:
| Q |
354 |
cagatcaacttaattcataagtataagttttcagtcaaaaatcggttttttagtgtttgacaaaggtgtaatatcatttcaaaatgaacaatttggtctt |
453 |
Q |
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| T |
6452233 |
cagatcaacttagttcataagtataagttttcggtcaaaaatcggttttttagtgtttgacaaaggtgtaatatcatttcaaaatgaacaatttggtctt |
6452134 |
T |
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| Q |
454 |
tgatggaac-aaagccttaaatatttcttctcaaactctatcaaaataatgatttggtaatgcatgtatgtgtcata |
529 |
Q |
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| T |
6452133 |
tgatggaacaaaagccttaaatatttcttctcaaactctatcacaataatgatttggtaatgcatgtatgtgtcata |
6452057 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 443 - 529
Target Start/End: Complemental strand, 6451881 - 6451794
Alignment:
| Q |
443 |
aatttggtctttgatggaacaaag-ccttaaatatttcttctcaaactctatcaaaataatgatttggtaatgcatgtatgtgtcata |
529 |
Q |
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| T |
6451881 |
aatttggtccttgatggaaaaaaatccttaaatatttcttcttatactctatcaaaacaatgatttggtaatacatatatgtgtcata |
6451794 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 248 - 288
Target Start/End: Complemental strand, 6452341 - 6452301
Alignment:
| Q |
248 |
atgcaaaaatataaagattctagtgaagattcaatgtgatc |
288 |
Q |
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| T |
6452341 |
atgcaaaaatataaagattcgagtgaagattcaatgtgatc |
6452301 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 150; Significance: 5e-79; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 67 - 227
Target Start/End: Complemental strand, 24743693 - 24743532
Alignment:
| Q |
67 |
tgatagactatattcgatgttcatgatttctttatcatgttgttcatctgcattttatttggtaaa-ctgttgaaattttattgtgggtttagatgatat |
165 |
Q |
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| T |
24743693 |
tgatagactagattcgatgttcatgatttctttatcatgttgttcatctgcattttatttggtaaaactgttgaaattttattgtgggtttagatgatat |
24743594 |
T |
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| Q |
166 |
gttctgatagctgccagcaatactaggactgcacttttaaaactacataaattaaagtaggt |
227 |
Q |
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| T |
24743593 |
gttctgatagctgccagcaatactaggactgcacttttaaaactacataaattaaagtaggt |
24743532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 8 - 49
Target Start/End: Complemental strand, 24743722 - 24743681
Alignment:
| Q |
8 |
gttatcactgtttgaagggctaatgaaggtgattgactagat |
49 |
Q |
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| T |
24743722 |
gttatcactgcttgaagggctaatgaaggtgatagactagat |
24743681 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 111
Target Start/End: Complemental strand, 45911624 - 45911532
Alignment:
| Q |
19 |
ttgaagggctaatgaaggtgattgactagatatttgtcttttgctctttgatagactatattcgatgttcatgatttctttatcatgttgttc |
111 |
Q |
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| T |
45911624 |
ttgaagagctaatgaaggtgacttacttactatttgtcttctgccttttgatagactagattcaatgtggatattttctttatcatgttgttc |
45911532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 111
Target Start/End: Complemental strand, 19675318 - 19675226
Alignment:
| Q |
19 |
ttgaagggctaatgaaggtgattgactagatatttgtcttttgctctttgatagactatattcgatgttcatgatttctttatcatgttgttc |
111 |
Q |
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| T |
19675318 |
ttgaagagctaatgaaggtgacttacttactatttgtcttctgccttttgatagactagattcaatgtggatattttctttatcatgttgttc |
19675226 |
T |
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