View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2859-Insertion-3 (Length: 822)
Name: NF2859-Insertion-3
Description: NF2859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2859-Insertion-3 |
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| [»] scaffold0351 (3 HSPs) |
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| [»] scaffold1325 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 535; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 535; E-Value: 0
Query Start/End: Original strand, 18 - 731
Target Start/End: Complemental strand, 11567354 - 11566628
Alignment:
| Q |
18 |
ctcaaattgtctaatcaatatgacatgaattaataattaatcaatataactaaaaaataattagaaaggtagagatattaaagttagaggagaaatggtt |
117 |
Q |
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|||||||||||||||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| | |
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| T |
11567354 |
ctcaaattgtctaatcaacataacaggaattaataattaatcaatataactaaaaaataattagaaaggtagagatattaaacttactggagaaatggct |
11567255 |
T |
|
| Q |
118 |
cgacttcttcgcaatttacaagcacgtaagtctcggcgattggaagctcctcatttgtcaagaatctgtttctacatttcccaataggacgacaagggta |
217 |
Q |
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||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
11567254 |
cgacttctttgcaatttacaagcacataagtctcggcgatttgaagctcctcatttgtcaagaatctgtttctacctttcccaataggacgacaagggta |
11567155 |
T |
|
| Q |
218 |
tttaaaaatagacaggcattcatcaaccataccctccccaccatcatcatttcgaggaactttggtgttccttgtttgcaatttgggatcaagatacttg |
317 |
Q |
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||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |
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| T |
11567154 |
tttaaaaatagacaggcattcatcaacgataccgtgcccaccatcatcatttcgaggaactttggtgtgccttgtttgcaatttgggatcaatatacttg |
11567055 |
T |
|
| Q |
318 |
gaaa--------------tctcttccaaaatatatgcttcacaaatagattcttcaactctcgccttatatcgagcctttcttttcaaatataatataca |
403 |
Q |
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|||| |||||||||| ||||||||||||||||||||| ||||||||| ||||||| ||| |||||||||||||||||||||||||| |
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| T |
11567054 |
gaaacgtaattggaaaaatctcttccaatatatatgcttcacaaatagatccttcaactc--gccttatttcgtgcctttcttttcaaatataatataca |
11566957 |
T |
|
| Q |
404 |
cctctcaaatggatacatccacctatattgcacagatcctccaaccttagcttcatatgggagatgaacaagtaaatgctccatgacatcaaagaatgct |
503 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |
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| T |
11566956 |
actctcaaatggatacatccacctatattgcacaggtcctccaaccttagcttcatatgggagatgcacaagtaaatgctccattacatcaaagaatgct |
11566857 |
T |
|
| Q |
504 |
ggaggaaatatcttctctaacttgcaaactaattcaataatggcaagctctgcattctccatatctgaaacacgtaacacatttgcacaaatttctttaa |
603 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
11566856 |
ggaggaaatatcttctctaacttgcaaactatttcaataatggcaagctctgcattctccatatctgaaacacgtaactcatttgcacaaatttctttaa |
11566757 |
T |
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| Q |
604 |
ggaacaagctaagttccgttaatgccctccattta-gttttggcaacatatcacgaaatgccaaaggaatcagcctttgcatgaaaacatgacagtcatg |
702 |
Q |
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|||||||||||||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||| |
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| T |
11566756 |
agaacaagctaagttccgttaatgctctccatataggttttggcaacatatcacgaaatgccaaaggaatcaacctttccatgaaaacatgacattcatg |
11566657 |
T |
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| Q |
703 |
acttttcattccatttatttttccctctt |
731 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
11566656 |
acttttcattccatttatttttccctctt |
11566628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 732 - 822
Target Start/End: Complemental strand, 11566253 - 11566161
Alignment:
| Q |
732 |
attatgtgaagtaaaaccaaaactgaaatcatctagc-gattcactctatttaggatctctatcccggaacgtc-gtgtagtggtaaagactt |
822 |
Q |
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|||||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
11566253 |
attatgtgaagttaaaccaaaaccaaaatcatctaggtgattcactctatttaggatctctatcccggaacgtcggtgtagtggtaaagactt |
11566161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0351 (Bit Score: 174; Significance: 3e-93; HSPs: 3)
Name: scaffold0351
Description:
Target: scaffold0351; HSP #1
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 527 - 731
Target Start/End: Original strand, 3640 - 3845
Alignment:
| Q |
527 |
gcaaactaattcaataatggcaagctctgcattctccatatctgaaacacgtaacacatttgcacaaatttctttaaggaacaagctaagttccgttaat |
626 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||| |
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| T |
3640 |
gcaaactatttcaataatggcaagctctgcattctccatatctgaaacacgtaactcatttgcacaaatttctgtaaagaacaagctaagttccgttaat |
3739 |
T |
|
| Q |
627 |
gccctccattta-gttttggcaacatatcacgaaatgccaaaggaatcagcctttgcatgaaaacatgacagtcatgacttttcattccatttatttttc |
725 |
Q |
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| T |
3740 |
gccctccatataggttttggcaacatatcacgaaatgccaaaggaatcaacctttgcatgaaaacatgacagtcatgacttttcattccatttatttttc |
3839 |
T |
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| Q |
726 |
cctctt |
731 |
Q |
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|||||| |
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| T |
3840 |
cctctt |
3845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0351; HSP #2
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 727 - 822
Target Start/End: Original strand, 11846 - 11943
Alignment:
| Q |
727 |
ctcttattatgtgaagtaaaaccaaaactgaaatcatctag-cgattcactctatttaggatctctatcccggaacgtc-gtgtagtggtaaagactt |
822 |
Q |
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||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
11846 |
ctcttattatgtgaagttaaaccaaaactgaaatcatctaggcgattcactctatttaggatctctatcccggaacgtcggtgtagtggtaaagactt |
11943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0351; HSP #3
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 727 - 822
Target Start/End: Original strand, 4206 - 4303
Alignment:
| Q |
727 |
ctcttattatgtgaagtaaaaccaaaactgaaatcatcta-gcgattcactctatttaggatctctatcccggaacgtc-gtgtagtggtaaagactt |
822 |
Q |
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||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |
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| T |
4206 |
ctcttattatgtgaagttaaaccaaaactgaaatcatctaggcgattcactctatttaggatctctatcctggaacgtcggtgtagtggtaaagactt |
4303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1325 (Bit Score: 80; Significance: 4e-37; HSPs: 1)
Name: scaffold1325
Description:
Target: scaffold1325; HSP #1
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 8 - 99
Target Start/End: Complemental strand, 92 - 1
Alignment:
| Q |
8 |
ttggcgagttctcaaattgtctaatcaatatgacatgaattaataattaatcaatataactaaaaaataattagaaaggtagagatattaaa |
99 |
Q |
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||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
92 |
ttggcgagtcctcaaattgtctaatcattatgacaggaattaataattaatcaatataactaaaaaataattagaaaggtagagatattaaa |
1 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 403 - 463
Target Start/End: Complemental strand, 13941582 - 13941522
Alignment:
| Q |
403 |
acctctcaaatggatacatccacctatattgcacagatcctccaaccttagcttcatatgg |
463 |
Q |
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|||||||||||||||||||||| ||||||||||| | |||||||| | ||||||||||| |
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| T |
13941582 |
acctctcaaatggatacatccatctatattgcactggacctccaactcttgcttcatatgg |
13941522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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