View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2859-Insertion-4 (Length: 712)

Name: NF2859-Insertion-4
Description: NF2859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2859-Insertion-4
NF2859-Insertion-4
[»] chr3 (1 HSPs)
chr3 (7-712)||(43489071-43489786)


Alignment Details
Target: chr3 (Bit Score: 606; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 606; E-Value: 0
Query Start/End: Original strand, 7 - 712
Target Start/End: Complemental strand, 43489786 - 43489071
Alignment:
Q  7 atcttcatcatcgtcgccagcttcttctttgtcatcatcttcttctgcatttgtttcttctatgcagggcaatacttcagtttcctcgtatttttctact 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43489786 atcttcatcatcgtcgccagcttcttctttgtcatcatcttcttctgcatttgtttcttctatgcagggcaatacttcagtttcctcgtatttttctact 43489687  T
Q  107 cagttgccaccttggtctacttcggatcatagctcttctccttcttgatgattaattttcaatgaatcagaggcaaaaacatggataccaaacacgatac 206  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  43489686 cagttgccaccttggtctacttcggatcagagctcttctccttcttgatgattaattttcaatgaatcacaggcaaaaacatggataccaaacacgatac 43489587  T
Q  207 tgataca------cctgtctgaagtgtcaatgctacatcgtccatttttatctggtgtaatttttggataccaaacacgatactgatattgatacgcctg 300  Q
    ||||||       ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  43489586 tgatactgatacgcctgtctgaagtgtcgatgctacatcgtccatttttatctggtgtaatttttggataccaaacacgatattgatactgatacgcctg 43489487  T
Q  301 cccgaagtgtcattgctacatcctccatttttatctggtgtaattttcttgaatttagatcatgtggaccttctgctgctgaagatccaaacacaaattt 400  Q
     ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||    
T  43489486 tccgaagtgtcaatgctacatcgtccatttttatctggtgtaattttcttgaatttagatcatgtgcacctcctcctgctgaagatccaaacacaaattt 43489387  T
Q  401 gctcttttattacattttatatttccaatagctaatgcaattcattcacaattcatgacattttttgtggtgataatgtttctagaaatgcaaattttaa 500  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  43489386 gctcttttattacattttatatttccaata-ctaatgcaattcattcgcaattcatgacattttttgtggtgataatttttctagaaatgcaaattttaa 43489288  T
Q  501 tttttctttgttagatagtagtactcaatatttgaaagaaatttgattccctaccaattggagtaattgtatttagtttgcaagttatgttccattgttt 600  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  43489287 tttttctttgttagatagtagtactcaatatttgaaagaaatttgattccctaccaattggagtaattgtatttagtttgcaagctatgttccattgttt 43489188  T
Q  601 tgaaattttgaaagtggcacgttagcgacatcata-----acatgacaagagaataatgtgtttgaccatttgtattcatgtaacgaggtcttcttctac 695  Q
    |||||||||||||||||||||||||||||||||||     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43489187 tgaaattttgaaagtggcacgttagcgacatcataacataacatgacaagagaataatgtgtttgaccatttgtattcatgtaacgaggtcttcttctac 43489088  T
Q  696 caattcttttctcacta 712  Q
    |||||||||||||||||    
T  43489087 caattcttttctcacta 43489071  T

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