View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2859-Insertion-5 (Length: 732)
Name: NF2859-Insertion-5
Description: NF2859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2859-Insertion-5 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 458; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 218 - 732
Target Start/End: Original strand, 41722317 - 41722831
Alignment:
| Q |
218 |
ggggaggagcatgtggggttaccagacattaggcaagtctttcactgaaaaccaggaaccaaaattcataatcatatagtacttttatctttctttcatt |
317 |
Q |
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| T |
41722317 |
ggggaggagcatgtggggttaccagacattaggcaagtctttcactgaaaaccaggaaccaaaattcataatcatatagtacttttttctttctttcatt |
41722416 |
T |
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| Q |
318 |
catttcagtattatagagtatagagtacacaatgtgcagtccaacacgtgtaaatgtaaacacctatcttttttattttctgcattctctaaccatttat |
417 |
Q |
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| T |
41722417 |
catttcggtattatagagtatagagtacacaatgtgcagtccaacacgtgtaaatgtaaacacctatcttttttattttctgcattctctaaccatttat |
41722516 |
T |
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| Q |
418 |
ttatagattatagaagataccaatttcacatcagttacatatcagtctttgctgtttggtgtgactgctgaagttaacttgtccgttggaaaaatacnnn |
517 |
Q |
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| T |
41722517 |
ttatagattatagaagataccaatttcacatcagttacatatcagtctttgctgtttggtgtgactgctgaagttaacttgtccattggaaaaatacttt |
41722616 |
T |
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| Q |
518 |
nnnnccttattctactttcagtttcttcagcttcctatttccatttgtgtccttagatgtgaattgcataaggtaaacaaacatgttaacttcttcaaca |
617 |
Q |
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| T |
41722617 |
ttttccttattctactttctttttcttcaacttcctatttccatttttgtccttagatgtgaattgcataaggtaaacaaacatgttaacttcttcaaca |
41722716 |
T |
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| Q |
618 |
ttcttaacagcatccatcaattttatgttcctcaattattgatgaactatttaggacctataacccttttatttgaattattttgattcatgtgagtttt |
717 |
Q |
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| T |
41722717 |
ttcttaacagcatccatcaattttatgttcctcaattattgttgaactatttaggatctataacccttttatttgaattattttgattcatgtgagtttt |
41722816 |
T |
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| Q |
718 |
tatgtaatgtaagac |
732 |
Q |
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| T |
41722817 |
tatgtaatgtaagac |
41722831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 11 - 196
Target Start/End: Original strand, 41721857 - 41722042
Alignment:
| Q |
11 |
ataaccatctagatggtccgagtggtcatgactcggacaccttaaacaaatggtcagagtttaattcgtaactaggcaaaacttactcagttgatcgagg |
110 |
Q |
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| T |
41721857 |
ataaccatctagatggtccgagtggtcatgactcagacaccttaaacaagtggtcagagtttaattcgtaaccaggcaaaacttactcagttgatcgagg |
41721956 |
T |
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| Q |
111 |
agtatcccccttgcgaaataagtttttcgactgagattgattaatgtttaacggtggtggatacttcgtatctatgtcatgattat |
196 |
Q |
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| T |
41721957 |
agtatcccccttgcgaaataattttttcgactgagattgattaatgtttaacggtggtggatacttcgtatcaatgtcatgattat |
41722042 |
T |
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