View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2859-Insertion-6 (Length: 672)

Name: NF2859-Insertion-6
Description: NF2859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2859-Insertion-6
NF2859-Insertion-6
[»] chr1 (6 HSPs)
chr1 (212-487)||(12018516-12018785)
chr1 (7-213)||(12018294-12018492)
chr1 (545-672)||(12018780-12018902)
chr1 (65-103)||(7244580-7244618)
chr1 (64-96)||(17009507-17009539)
chr1 (67-103)||(39976138-39976174)
[»] chr2 (4 HSPs)
chr2 (210-258)||(11532994-11533042)
chr2 (65-103)||(2416419-2416457)
chr2 (65-97)||(37419593-37419625)
chr2 (65-101)||(42419901-42419937)
[»] chr4 (6 HSPs)
chr4 (146-213)||(13412729-13412796)
chr4 (64-98)||(25606253-25606287)
chr4 (65-103)||(27043756-27043794)
chr4 (65-103)||(41336866-41336904)
chr4 (65-103)||(52315123-52315161)
chr4 (64-97)||(679403-679436)
[»] chr3 (7 HSPs)
chr3 (65-103)||(25447171-25447209)
chr3 (65-102)||(33405118-33405155)
chr3 (65-101)||(26911699-26911735)
chr3 (212-261)||(23545557-23545606)
chr3 (212-248)||(30672520-30672556)
chr3 (68-104)||(34610735-34610771)
chr3 (65-97)||(36507018-36507050)
[»] chr7 (6 HSPs)
chr7 (65-101)||(9210929-9210965)
chr7 (64-103)||(19302488-19302527)
chr7 (64-98)||(41040276-41040310)
chr7 (65-103)||(44822064-44822102)
chr7 (179-224)||(34478291-34478336)
chr7 (64-101)||(43694493-43694530)
[»] chr8 (2 HSPs)
chr8 (65-103)||(1074194-1074232)
chr8 (65-103)||(38602433-38602471)
[»] chr5 (6 HSPs)
chr5 (65-103)||(9107196-9107234)
chr5 (70-103)||(10640059-10640092)
chr5 (70-103)||(35445775-35445808)
chr5 (65-97)||(6392581-6392613)
chr5 (153-213)||(24089055-24089115)
chr5 (154-214)||(35907846-35907906)
[»] chr6 (3 HSPs)
chr6 (64-97)||(7351596-7351629)
chr6 (67-103)||(1681855-1681891)
chr6 (70-102)||(34910340-34910372)


Alignment Details
Target: chr1 (Bit Score: 180; Significance: 7e-97; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 180; E-Value: 7e-97
Query Start/End: Original strand, 212 - 487
Target Start/End: Original strand, 12018516 - 12018785
Alignment:
212 atgaatctaaaaatgcaaaaattgcttataaatatgatcgaaatgagtaatttataagttattttgagcttattagttctccaagataatgaannnnnnn 311  Q
    |||||||||||||||||||| |||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||            
12018516 atgaatctaaaaatgcaaaagttgcttgtaaatatgaccgaaatgagtaattcataagttattttgagcttattagttctccaagataatga------tt 12018609  T
312 nnnnnnnnntaaatattatagtacaaaagcattacgtgatataattgaaatttcaactatgtttgtcccctaaaccaccgcatatcattcatttacagaa 411  Q
             ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
12018610 ttttttttttaaatattatagtacaaaagcatcacgtgatataattgaaatttcaactatgtttgtcccctaaaccaccgcatatcattcatttacagaa 12018709  T
412 ccctaataattttaataaagaaaaatgatacaacgatttggggaactagaccaaaatctaagataacaatgaagat 487  Q
    |||||||||||||||||||||||||||| ||||||||| ||| ||||||||||||| ||||||||||||| |||||    
12018710 ccctaataattttaataaagaaaaatgaaacaacgattcgggaaactagaccaaaacctaagataacaatcaagat 12018785  T

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Target: chr1; HSP #2
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 7 - 213
Target Start/End: Original strand, 12018294 - 12018492
Alignment:
7 attattaaagtcaatatatcatgcatgaaggctgggaaatagcctaaagtgtttcttaattgacttatttgagtttatctactgatataagttttgtatt 106  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| ||        |||||||||||    
12018294 attattaaagtcaatatatcatgcatgaagactgggaaatagcctaaagtgtttcttaattgacgtatttgagtttattta--------agttttgtatt 12018385  T
107 atgatttgaaaaaggcttatgacatactccctctggtcagtcacatatataaacaacttttgattatttatgttcattaaataaatgatgtatatgggct 206  Q
    ||  |||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||||| ||||||||||||||| ||||| || |||    
12018386 attgtttgaaaaaggcttatgacatactccctctggtcggtcacatatataaacaattttttattatttatattcattaaataaatgttgtatctgagct 12018485  T

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Target: chr1; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 545 - 672
Target Start/End: Original strand, 12018780 - 12018902
Alignment:
545 caagatgatgagaaaaagggtgcggtgcaaagcaagtaattaagcaacataagataacaatacttatgaatacagtttatagcttatnnnnnnntaattt 644  Q
    |||||||||||||||||| ||||||||||||||||||||    ||||||||||||||||||||||||||| ||||||||||||||||        |||||    
12018780 caagatgatgagaaaaagagtgcggtgcaaagcaagtaa----gcaacataagataacaatacttatgaaaacagtttatagcttataaaaaaacaattt 12018875  T
645 gactttattttttctctttactataaaa 672  Q
    |||||||||||||||| |||||||||||    
12018876 gactttattttttctc-ttactataaaa 12018902  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 65 - 103
Target Start/End: Original strand, 7244580 - 7244618
Alignment:
65 attgacttatttgagtttatctactgatataagttttgt 103  Q
    |||||| |||||||||||||||| |||||||||||||||    
7244580 attgacctatttgagtttatctattgatataagttttgt 7244618  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 64 - 96
Target Start/End: Original strand, 17009507 - 17009539
Alignment:
64 aattgacttatttgagtttatctactgatataa 96  Q
    |||||||||||||||||||||||||||| ||||    
17009507 aattgacttatttgagtttatctactgacataa 17009539  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 67 - 103
Target Start/End: Original strand, 39976138 - 39976174
Alignment:
67 tgacttatttgagtttatctactgatataagttttgt 103  Q
    ||||||||||||| ||||||||||| |||||||||||    
39976138 tgacttatttgagattatctactgacataagttttgt 39976174  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 210 - 258
Target Start/End: Original strand, 11532994 - 11533042
Alignment:
210 ttatgaatctaaaaatgcaaaaattgcttataaatatgatcgaaatgag 258  Q
    |||||||||||||||   |||||||||||||||||||||||||||||||    
11532994 ttatgaatctaaaaaaataaaaattgcttataaatatgatcgaaatgag 11533042  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 65 - 103
Target Start/End: Complemental strand, 2416457 - 2416419
Alignment:
65 attgacttatttgagtttatctactgatataagttttgt 103  Q
    ||||||||||||||||||||||||| | |||||||||||    
2416457 attgacttatttgagtttatctactaacataagttttgt 2416419  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 65 - 97
Target Start/End: Original strand, 37419593 - 37419625
Alignment:
65 attgacttatttgagtttatctactgatataag 97  Q
    ||||||||||||||||||||||||| |||||||    
37419593 attgacttatttgagtttatctacttatataag 37419625  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 65 - 101
Target Start/End: Complemental strand, 42419937 - 42419901
Alignment:
65 attgacttatttgagtttatctactgatataagtttt 101  Q
    |||||||||||||||||||||| |||| |||||||||    
42419937 attgacttatttgagtttatcttctgacataagtttt 42419901  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000006; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 146 - 213
Target Start/End: Complemental strand, 13412796 - 13412729
Alignment:
146 gtcacatatataaacaacttttgattatttatgttcattaaataaatgatgtatatgggctatattat 213  Q
    ||||||| ||||| ||||||||| || || ||||||||||||||| |||||||| ||||| |||||||    
13412796 gtcacatttataagcaacttttgctttttcatgttcattaaataactgatgtatctgggcaatattat 13412729  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 64 - 98
Target Start/End: Complemental strand, 25606287 - 25606253
Alignment:
64 aattgacttatttgagtttatctactgatataagt 98  Q
    ||||||| |||||||||||||||||||||||||||    
25606287 aattgacgtatttgagtttatctactgatataagt 25606253  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 65 - 103
Target Start/End: Original strand, 27043756 - 27043794
Alignment:
65 attgacttatttgagtttatctactgatataagttttgt 103  Q
    ||||||||||||||| ||||||||||| |||||||||||    
27043756 attgacttatttgagcttatctactgacataagttttgt 27043794  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 65 - 103
Target Start/End: Complemental strand, 41336904 - 41336866
Alignment:
65 attgacttatttgagtttatctactgatataagttttgt 103  Q
    ||||||||||||||||||||||||| | |||||||||||    
41336904 attgacttatttgagtttatctactcacataagttttgt 41336866  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 65 - 103
Target Start/End: Original strand, 52315123 - 52315161
Alignment:
65 attgacttatttgagtttatctactgatataagttttgt 103  Q
    |||||||||||||||||||||||||||  ||||||||||    
52315123 attgacttatttgagtttatctactgacgtaagttttgt 52315161  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 97
Target Start/End: Complemental strand, 679436 - 679403
Alignment:
64 aattgacttatttgagtttatctactgatataag 97  Q
    ||||||||||||||||||||||||||| ||||||    
679436 aattgacttatttgagtttatctactggtataag 679403  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 65 - 103
Target Start/End: Original strand, 25447171 - 25447209
Alignment:
65 attgacttatttgagtttatctactgatataagttttgt 103  Q
    ||||||||||||||||||||||||||| |||||||||||    
25447171 attgacttatttgagtttatctactgacataagttttgt 25447209  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 102
Target Start/End: Original strand, 33405118 - 33405155
Alignment:
65 attgacttatttgagtttatctactgatataagttttg 102  Q
    ||||||||||||||||||||||||||| ||||||||||    
33405118 attgacttatttgagtttatctactgacataagttttg 33405155  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 65 - 101
Target Start/End: Complemental strand, 26911735 - 26911699
Alignment:
65 attgacttatttgagtttatctactgatataagtttt 101  Q
    ||||||||||||||||||||||||||| |||||||||    
26911735 attgacttatttgagtttatctactgacataagtttt 26911699  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 261
Target Start/End: Original strand, 23545557 - 23545606
Alignment:
212 atgaatctaaaaatgcaaaaattgcttataaatatgatcgaaatgagtaa 261  Q
    |||||||||||||  |||||| ||||||||||| || |||||||||||||    
23545557 atgaatctaaaaaaacaaaaagtgcttataaatgtggtcgaaatgagtaa 23545606  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 212 - 248
Target Start/End: Complemental strand, 30672556 - 30672520
Alignment:
212 atgaatctaaaaatgcaaaaattgcttataaatatga 248  Q
    ||||||||||||||| |||| ||||||||||||||||    
30672556 atgaatctaaaaatggaaaatttgcttataaatatga 30672520  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 68 - 104
Target Start/End: Original strand, 34610735 - 34610771
Alignment:
68 gacttatttgagtttatctactgatataagttttgta 104  Q
    |||||||||||| ||||||||||| ||||||||||||    
34610735 gacttatttgagcttatctactgacataagttttgta 34610771  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 65 - 97
Target Start/End: Original strand, 36507018 - 36507050
Alignment:
65 attgacttatttgagtttatctactgatataag 97  Q
    |||| ||||||||||||||||||||||||||||    
36507018 attggcttatttgagtttatctactgatataag 36507050  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 65 - 101
Target Start/End: Complemental strand, 9210965 - 9210929
Alignment:
65 attgacttatttgagtttatctactgatataagtttt 101  Q
    ||||||||||||||| |||||||||||||||||||||    
9210965 attgacttatttgagcttatctactgatataagtttt 9210929  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 103
Target Start/End: Original strand, 19302488 - 19302527
Alignment:
64 aattgacttatttgagtttatctactgatataagttttgt 103  Q
    |||||||||||||||| ||||||||||| |||||||||||    
19302488 aattgacttatttgagcttatctactgacataagttttgt 19302527  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 64 - 98
Target Start/End: Complemental strand, 41040310 - 41040276
Alignment:
64 aattgacttatttgagtttatctactgatataagt 98  Q
    |||||| ||||||||||||||||||||||||||||    
41040310 aattgatttatttgagtttatctactgatataagt 41040276  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 65 - 103
Target Start/End: Complemental strand, 44822102 - 44822064
Alignment:
65 attgacttatttgagtttatctactgatataagttttgt 103  Q
    |||||||||||||||||||||| |||| |||||||||||    
44822102 attgacttatttgagtttatctgctgacataagttttgt 44822064  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 224
Target Start/End: Complemental strand, 34478336 - 34478291
Alignment:
179 ttcattaaataaatgatgtatatgggctatattatgaatctaaaaa 224  Q
    |||||| | |||||||||||| ||| ||||||||||||||||||||    
34478336 ttcatttactaaatgatgtatttggtctatattatgaatctaaaaa 34478291  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 101
Target Start/End: Original strand, 43694493 - 43694530
Alignment:
64 aattgacttatttgagtttatctactgatataagtttt 101  Q
    |||||| ||||||||||||||||||| |||||||||||    
43694493 aattgatttatttgagtttatctactaatataagtttt 43694530  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 65 - 103
Target Start/End: Original strand, 1074194 - 1074232
Alignment:
65 attgacttatttgagtttatctactgatataagttttgt 103  Q
    |||||||||||||||||||| |||| |||||||||||||    
1074194 attgacttatttgagtttatttactcatataagttttgt 1074232  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 65 - 103
Target Start/End: Complemental strand, 38602471 - 38602433
Alignment:
65 attgacttatttgagtttatctactgatataagttttgt 103  Q
    ||||||||||||||| ||||||||||| |||||||||||    
38602471 attgacttatttgagcttatctactgacataagttttgt 38602433  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 65 - 103
Target Start/End: Complemental strand, 9107234 - 9107196
Alignment:
65 attgacttatttgagtttatctactgatataagttttgt 103  Q
    ||||||||||||||||||||||| ||| |||||||||||    
9107234 attgacttatttgagtttatctagtgacataagttttgt 9107196  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 103
Target Start/End: Complemental strand, 10640092 - 10640059
Alignment:
70 cttatttgagtttatctactgatataagttttgt 103  Q
    |||||||||||||||||||||| |||||||||||    
10640092 cttatttgagtttatctactgacataagttttgt 10640059  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 103
Target Start/End: Original strand, 35445775 - 35445808
Alignment:
70 cttatttgagtttatctactgatataagttttgt 103  Q
    |||||||||||||||||||||| |||||||||||    
35445775 cttatttgagtttatctactgacataagttttgt 35445808  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 65 - 97
Target Start/End: Original strand, 6392581 - 6392613
Alignment:
65 attgacttatttgagtttatctactgatataag 97  Q
    ||||||||||||||||||||||||| |||||||    
6392581 attgacttatttgagtttatctactaatataag 6392613  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 153 - 213
Target Start/End: Original strand, 24089055 - 24089115
Alignment:
153 atataaacaacttttgattatttatgttcattaaataaatgatgtatatgggctatattat 213  Q
    ||||||||||||||| | | |||| ||||||| |||||||||||||| ||| | |||||||    
24089055 atataaacaactttttactttttaggttcattcaataaatgatgtatgtggtccatattat 24089115  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 154 - 214
Target Start/End: Original strand, 35907846 - 35907906
Alignment:
154 tataaacaacttttgattatttatgttcattaaataaatgatgtatatgggctatattatg 214  Q
    ||||||||| |||||||| || | ||||||| ||| |||||||||||||  ||||||||||    
35907846 tataaacaaattttgatttttaaggttcattcaattaatgatgtatatgatctatattatg 35907906  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 97
Target Start/End: Original strand, 7351596 - 7351629
Alignment:
64 aattgacttatttgagtttatctactgatataag 97  Q
    |||||||||||||||||||||||||||| |||||    
7351596 aattgacttatttgagtttatctactgacataag 7351629  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 67 - 103
Target Start/End: Original strand, 1681855 - 1681891
Alignment:
67 tgacttatttgagtttatctactgatataagttttgt 103  Q
    ||||||||||||||||||||| || ||||||||||||    
1681855 tgacttatttgagtttatctattggtataagttttgt 1681891  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 70 - 102
Target Start/End: Original strand, 34910340 - 34910372
Alignment:
70 cttatttgagtttatctactgatataagttttg 102  Q
    ||||||||||||||||||||||||| |||||||    
34910340 cttatttgagtttatctactgatatcagttttg 34910372  T

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