View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2859-Insertion-7 (Length: 663)
Name: NF2859-Insertion-7
Description: NF2859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2859-Insertion-7 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 299; Significance: 1e-168; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 287 - 663
Target Start/End: Complemental strand, 51958469 - 51958093
Alignment:
| Q |
287 |
ttttattgatatatcgtaataagaaaaaatgacgtggaaactggaaagaagttgagagaaacatgaaagatagggagcgtggaagatctcaattatcgaa |
386 |
Q |
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| T |
51958469 |
ttttattgatatatcgtagtaagaaaaaatgacgtggaaactggaaagaagttgagagaaacatgaaaggtagggagcgtggaagatctcaattatcgaa |
51958370 |
T |
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| Q |
387 |
tgagaagaaagaaagtaaagttggcgccgatttgcgatcatgaaaacgaaatcaatagaactgaatcaatttgtagaagaaatggaaaccgaggaagaan |
486 |
Q |
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| T |
51958369 |
tgagaagaaagaaagtaaagttggcgccgatttgcgatcatgaaaacgaaatcaatagaactgaatcaatttgtagaagaaatggaaaccgaggaagaaa |
51958270 |
T |
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| Q |
487 |
nnnnnnnnnnnnnnnnnnnnnacagaggcgttaagttaggaatgtgggaaactatcctccgtaatcaccacaactctttgaaatctctcttccatcttaa |
586 |
Q |
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| T |
51958269 |
ccaccaccacccccaccaccaacggaggcgttaagttaggaatgtgggaaactatcctccgtaatcaccacaactctttgaaatctctcttccatcttaa |
51958170 |
T |
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| Q |
587 |
aaaacccgattccatcatcaccgatcactcctccgtcaattcccccaaacctattcctcaactctctcccatcgcca |
663 |
Q |
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| T |
51958169 |
aaaacccgattccatcatcaccgatcactcctccgtcaattcccccaaacctattcctcaactctctcccatcgcca |
51958093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 80 - 192
Target Start/End: Complemental strand, 51958710 - 51958598
Alignment:
| Q |
80 |
tttactacactaactcttattgttaatgagactgaatcatctctaaaattgaatttgtaaccattgaaaaataagtcttgttaacaagtatctttagaaa |
179 |
Q |
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| T |
51958710 |
tttactacactaactcttactgataatgagactgaatcatctctaaaattgaatttgtaaccattgaaaaataagtcttgttaacaagtacctttagaaa |
51958611 |
T |
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| Q |
180 |
ttagaacatttat |
192 |
Q |
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| T |
51958610 |
ttagaacatttat |
51958598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 8 - 84
Target Start/End: Complemental strand, 51958821 - 51958744
Alignment:
| Q |
8 |
gttcattctcctcttcttgcacgcacacacgcaagtt-nnnnnnntatataattttgggtctaaagcaaacgttttac |
84 |
Q |
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| T |
51958821 |
gttcattctcctcttcttgcacgcacacacgcaagttaaaaaaaatataaaattttgggtctaaagcaaacgttttac |
51958744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 81 - 171
Target Start/End: Complemental strand, 51960158 - 51960068
Alignment:
| Q |
81 |
ttactacactaactcttattgttaatgagactgaatcatctctaaaattgaatttgtaaccattgaaaaataagtcttgttaacaagtatc |
171 |
Q |
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| T |
51960158 |
ttactacactaactctcactaataatgggactgaataatctctaaaattgtagttggagccattaaaaaataggtcttgctaacaaatatc |
51960068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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