View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2859-Insertion-8 (Length: 692)
Name: NF2859-Insertion-8
Description: NF2859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2859-Insertion-8 |
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Alignment Details
Target: chr7 (Bit Score: 169; Significance: 3e-90; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 7 - 228
Target Start/End: Original strand, 28961309 - 28961538
Alignment:
| Q |
7 |
aggttatgatgtgttggtggtttcgtcgcgttgtctcgttatgggt--------gatggtacttttctaactctatccttttttaaggttttgattcttg |
98 |
Q |
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| T |
28961309 |
aggttacgatgtgttggtggtttcgtctcgttgtctcgttatgggtttttcttcgatggtacttttctaactctatcttgatttaaggttttgattcttg |
28961408 |
T |
|
| Q |
99 |
aatttacataaaccctatgctatacaattggtacgtgttgggaattttgttgttaggatagccattccattattcttgcttattcaatcttctgctttaa |
198 |
Q |
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| T |
28961409 |
aattttcataaaccctatgctatacaattggtacgtgttgggaattttgttgttgggatagccattccatcattcttgcttattcaatcttctgctttaa |
28961508 |
T |
|
| Q |
199 |
caacaaatttaaaaaggttatatacaaaac |
228 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
28961509 |
caacaaatttaaaaaggttatatacaaaac |
28961538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 317 - 365
Target Start/End: Original strand, 14701569 - 14701617
Alignment:
| Q |
317 |
ttttgttgagagattgatgatttcattgttagttatactatttcaattt |
365 |
Q |
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| T |
14701569 |
ttttgttgagagattgatgattccattgttagttatactatttcaattt |
14701617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 317 - 364
Target Start/End: Original strand, 14702973 - 14703020
Alignment:
| Q |
317 |
ttttgttgagagattgatgatttcattgttagttatactatttcaatt |
364 |
Q |
| |
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| T |
14702973 |
ttttgttgagagattgatgattccattgttagttatactatttcaatt |
14703020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 362 - 408
Target Start/End: Original strand, 14703036 - 14703082
Alignment:
| Q |
362 |
atttcattgacggtttctgcttttgatttgtttctactataggtttc |
408 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
14703036 |
atttcattgacggtttctgcttttgatttgtttctactttaggtttc |
14703082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 491 - 527
Target Start/End: Complemental strand, 34145806 - 34145770
Alignment:
| Q |
491 |
agcttgagtattctatagtgtcacctaaatagcttgg |
527 |
Q |
| |
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| T |
34145806 |
agcttgagtattctatagtgtcacctaaatagcttgg |
34145770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 3e-16; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 317 - 365
Target Start/End: Complemental strand, 46231638 - 46231590
Alignment:
| Q |
317 |
ttttgttgagagattgatgatttcattgttagttatactatttcaattt |
365 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
46231638 |
ttttgttgagagattgatgattccattgttagttatactatttcaattt |
46231590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 317 - 364
Target Start/End: Complemental strand, 46230232 - 46230185
Alignment:
| Q |
317 |
ttttgttgagagattgatgatttcattgttagttatactatttcaatt |
364 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
46230232 |
ttttgttgagagattgatgattccattgttagttatactatttcaatt |
46230185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 326 - 373
Target Start/End: Complemental strand, 46230129 - 46230082
Alignment:
| Q |
326 |
gagattgatgatttcattgttagttatactatttcaatttcattgacg |
373 |
Q |
| |
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||||||||||||| ||||||||||||||||||| ||||||||||||| |
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| T |
46230129 |
gagattgatgattccattgttagttatactattctaatttcattgacg |
46230082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 160
Target Start/End: Original strand, 31230927 - 31230966
Alignment:
| Q |
121 |
tacaattggtacgtgttgggaattttgttgttaggatagc |
160 |
Q |
| |
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|||||||||||||||||| |||||||||||||||| |||| |
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| T |
31230927 |
tacaattggtacgtgttgagaattttgttgttaggctagc |
31230966 |
T |
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