View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2859-Insertion-9 (Length: 590)
Name: NF2859-Insertion-9
Description: NF2859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2859-Insertion-9 |
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Alignment Details
Target: chr1 (Bit Score: 301; Significance: 1e-169; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 6 - 349
Target Start/End: Complemental strand, 6452642 - 6452301
Alignment:
| Q |
6 |
cattatttactttgaccatgactatcattcttttatatgttttgcaaccaaccacttcaattatgtctatctgcttatttacattatttaagttaatata |
105 |
Q |
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| T |
6452642 |
cattatttactttgaccatgactatcattcttttatatgttttgcaaccaaccacttcaattatgtctatcttcttatttacattatttaagttaatata |
6452543 |
T |
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| Q |
106 |
tatatgtatcctaagtacaaagatttgacttgttcataaaacataaaataaaatatcaaagatttgacaaggtctcggattcaaatatgagtatggaaat |
205 |
Q |
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| T |
6452542 |
tat--gtatcctaagtacaaagatttgacttgttcataaaacataaaataaaaaatcaaagatttgacaaggtctcggattcaaatatgagtttggaaat |
6452445 |
T |
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| Q |
206 |
tcatcaaggttcaagcttttagaaaattgttgcctccatttaggtttggcaaagacttcaagaattagtgttttaaagttgcacgcggaggtagttaatt |
305 |
Q |
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| T |
6452444 |
tcatcaaggttcaagcttttagaaaattgtttcctccatttaggtttggcaaagacttgaagaattagtgttttaaagttgcatgcggaggtagtcaatt |
6452345 |
T |
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| Q |
306 |
tacatgcaaaaatataaagattctagtgaagattcaatgtgatc |
349 |
Q |
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| T |
6452344 |
tacatgcaaaaatataaagattcgagtgaagattcaatgtgatc |
6452301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 415 - 590
Target Start/End: Complemental strand, 6452233 - 6452057
Alignment:
| Q |
415 |
cagatcaacttaattcataagtataagttttcagtcaaaaatcggttttttagtgtttgacaaaggtgtaatatcatttcaaaatgaacaatttggtctt |
514 |
Q |
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| T |
6452233 |
cagatcaacttagttcataagtataagttttcggtcaaaaatcggttttttagtgtttgacaaaggtgtaatatcatttcaaaatgaacaatttggtctt |
6452134 |
T |
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| Q |
515 |
tgatggaac-aaagccttaaatatttcttctcaaactctatcaaaataatgatttggtaatgcatgtatgtgtcata |
590 |
Q |
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| T |
6452133 |
tgatggaacaaaagccttaaatatttcttctcaaactctatcacaataatgatttggtaatgcatgtatgtgtcata |
6452057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 504 - 590
Target Start/End: Complemental strand, 6451881 - 6451794
Alignment:
| Q |
504 |
aatttggtctttgatggaacaaag-ccttaaatatttcttctcaaactctatcaaaataatgatttggtaatgcatgtatgtgtcata |
590 |
Q |
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| T |
6451881 |
aatttggtccttgatggaaaaaaatccttaaatatttcttcttatactctatcaaaacaatgatttggtaatacatatatgtgtcata |
6451794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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