View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2859R-Insertion-1 (Length: 1003)
Name: NF2859R-Insertion-1
Description: NF2859R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2859R-Insertion-1 |
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Alignment Details
Target: chr5 (Bit Score: 774; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 774; E-Value: 0
Query Start/End: Original strand, 9 - 929
Target Start/End: Complemental strand, 4272510 - 4271608
Alignment:
| Q |
9 |
gagatgctatgaatccaaatgatttgcttgtccatgactgtgatgttctcattccatgtgctttgggaggtgttctcaacaagtatgttttatctaagtc |
108 |
Q |
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| T |
4272510 |
gagatgctatgaatccaaatgatttgcttgtccatgactgtgatgttctcattccatgtgctttgggaggtgttctcaacaagtatgttttatctaagtc |
4272411 |
T |
|
| Q |
109 |
accttagtttataaatcatcattgttaaaataaataataaattgttggtgtaatttcaacttcatctattgtttcttgaagggaaaatgctaatgatgtg |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4272410 |
accttagtttataaatcatcattgttaaaataaataataaattgttggtgtaatttcaacttcatctattgtttcttgaagggaaaatgctaatgatgtg |
4272311 |
T |
|
| Q |
209 |
aaagcaaaatttattatagaggctgcaaatcatccaactgaccctgatgctgatgaggtaagaatattgaagaacttaaaatgagtctcatatttttcac |
308 |
Q |
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| T |
4272310 |
aaagcaaaatttattatagaggctgcaaatcatccaactgaccctgatgctgatgaggtaagaatattgaagaacttaaaatgagtctcatatttttca- |
4272212 |
T |
|
| Q |
309 |
ttaaaagtgatttttcattcgtaaaatttaagtgatttatttgtcgcagatactgtctaagaaaggagtgattatattaccagacgtttatgccaatgct |
408 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
4272211 |
-----------------ttcgtaaaatttaagtgatttatttgtcgtagatactgtctaagaaaggagtaattatattaccagacgtttatgccaatgct |
4272129 |
T |
|
| Q |
409 |
ggtggagtgacagtaagctactttgaatgggttcaggtaatagttaataagatgagtgtaacagctatttgaaacatgttttattgaaatagattttaaa |
508 |
Q |
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| T |
4272128 |
ggtggagtgacagtaagctactttgaatgggttcaggtaatagttaataagatgagtgtaacagctatttgaaacatgttttattgaaatagattttaaa |
4272029 |
T |
|
| Q |
509 |
cttctctgtatggtttgtgcagaatattcaaggatttatgtgggatgaagagaaagtgaatcaggagctgaaaaggtacatgaccaaagctttcaatgac |
608 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
4272028 |
cttctctatatggtttgtgcagaatattcaaggatttatgtgggatgaagagaaagtgaaccaggagctgaaaaggtacatgaccaaagctttcaatgac |
4271929 |
T |
|
| Q |
609 |
ataaaagcaaactgtaaaactcacaattgtgacttgcgaatgggagctttcactcttggactcaaccgtgtcgctcgcgctacacttttgagaggttggg |
708 |
Q |
| |
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| T |
4271928 |
ataaaagcaaactgtaaaactcacaattgcgacttgcgaatgggagctttcactcttggactcaaccgtgtcgctcgcgctacacttttgagaggttggg |
4271829 |
T |
|
| Q |
709 |
aagcttagagaaacaccaccaccactacttgctatataagcttgtagctgcagttttctagnnnnnnnnnnnnnacctatctgttctcaaatagtctcnn |
808 |
Q |
| |
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| T |
4271828 |
aagcttagagaaacaccaccgccactacttgctatataagcttgtagctgcagttttctagtttttccttttttacctatctgttctcaaatagtctctt |
4271729 |
T |
|
| Q |
809 |
nnnnncttgtcatttatttgttatcttagtttagttttacttcattgttaagtatagacatagttttatgataaaagtatcattattttttgcctgagaa |
908 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
4271728 |
tttttcttgtcatttatttgttatcttagtttagttttacttcattgttaagtatagacttagttttatgataaaagtatcattattttttgcctgagaa |
4271629 |
T |
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| Q |
909 |
tgacatagttatatggtacat |
929 |
Q |
| |
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||||||||||||||||||||| |
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| T |
4271628 |
tgacatagttatatggtacat |
4271608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 4e-19; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 367 - 448
Target Start/End: Original strand, 41212400 - 41212481
Alignment:
| Q |
367 |
aagaaaggagtgattatattaccagacgtttatgccaatgctggtggagtgacagtaagctactttgaatgggttcaggtaa |
448 |
Q |
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| T |
41212400 |
aagaaaggagtcactatattacctgatatttatgctaatgctggtggagtgactgtgagctactttgaatgggttcaggtaa |
41212481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 526 - 715
Target Start/End: Original strand, 41212601 - 41212790
Alignment:
| Q |
526 |
tgcagaatattcaaggatttatgtgggatgaagagaaagtgaatcaggagctgaaaaggtacatgaccaaagctttcaatgacataaaagcaaactgtaa |
625 |
Q |
| |
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||||||| |||||||| ||||||||||||||||| |||||||| | |||||||| | ||||||| ||| |||||| ||||| || |||| || || |
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| T |
41212601 |
tgcagaacattcaaggttttatgtgggatgaagaaaaagtgaaccgcgagctgaagaaatacatgagcaaggctttcttggacattaaggcaatgtgcaa |
41212700 |
T |
|
| Q |
626 |
aactcacaattgtgacttgcgaatgggagctttcactcttggactcaaccgtgtcgctcgcgctacacttttgagaggttgggaagctta |
715 |
Q |
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| T |
41212701 |
aattcatgactgtgatctaagaatgggagccttcactctgggagtgaaccgtgtcgcccgggcaacacttttgaggggttgggaagctta |
41212790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 99
Target Start/End: Original strand, 41211950 - 41212038
Alignment:
| Q |
11 |
gatgctatgaatccaaatgatttgcttgtccatgactgtgatgttctcattccatgtgctttgggaggtgttctcaacaagtatgtttt |
99 |
Q |
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| T |
41211950 |
gatgccatggatccaaatgaattacttgttcatgaatgtgatgttcttatcccctgtgccttgggtggagttctaaacaagtatgtttt |
41212038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 184 - 268
Target Start/End: Original strand, 41212219 - 41212303
Alignment:
| Q |
184 |
ttgaagggaaaatgctaatgatgtgaaagcaaaatttattatagaggctgcaaatcatccaactgaccctgatgctgatgaggta |
268 |
Q |
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||||||||| |||||| |||||||||||| || ||||| | || || |||||||| || ||||||||||| |||||||||||| |
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| T |
41212219 |
ttgaagggataatgctgctgatgtgaaagctaagcttattgttgaagccgcaaatcaccccactgaccctgaagctgatgaggta |
41212303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 184 - 267
Target Start/End: Original strand, 33197932 - 33198015
Alignment:
| Q |
184 |
ttgaagggaaaatgctaatgatgtgaaagcaaaatttattatagaggctgcaaatcatccaactgaccctgatgctgatgaggt |
267 |
Q |
| |
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||||||||||||||| ||||| | || ||||||||||| | || || || ||||| |||||||||||||||||||||||||| |
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| T |
33197932 |
ttgaagggaaaatgcaaatgaaattaaggcaaaatttatagttgaagcagctaatcacccaactgaccctgatgctgatgaggt |
33198015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 185 - 267
Target Start/End: Original strand, 10152815 - 10152897
Alignment:
| Q |
185 |
tgaagggaaaatgctaatgatgtgaaagcaaaatttattatagaggctgcaaatcatccaactgaccctgatgctgatgaggt |
267 |
Q |
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|||||||||||||| ||||| | ||||| ||||||||| | || || || ||||| ||||||||||| ||||| |||||||| |
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| T |
10152815 |
tgaagggaaaatgcaaatgagattaaagccaaatttattgtggaagcagccaatcacccaactgacccagatgcagatgaggt |
10152897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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