View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2859R-Insertion-10 (Length: 438)

Name: NF2859R-Insertion-10
Description: NF2859R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2859R-Insertion-10
NF2859R-Insertion-10
[»] chr3 (2 HSPs)
chr3 (9-438)||(43489781-43490210)
chr3 (303-418)||(45013921-45014036)
[»] chr8 (2 HSPs)
chr8 (253-438)||(38653101-38653286)
chr8 (381-427)||(41747949-41747995)
[»] chr1 (1 HSPs)
chr1 (254-434)||(44331736-44331916)
[»] chr6 (3 HSPs)
chr6 (253-434)||(13409874-13410055)
chr6 (303-430)||(10554595-10554722)
chr6 (302-365)||(4038752-4038815)
[»] chr7 (3 HSPs)
chr7 (331-430)||(6568891-6568990)
chr7 (331-430)||(6583050-6583149)
chr7 (303-365)||(3160284-3160346)
[»] chr4 (4 HSPs)
chr4 (306-366)||(1726250-1726310)
chr4 (306-358)||(2428679-2428731)
chr4 (387-430)||(33718963-33719006)
chr4 (387-433)||(33720979-33721025)
[»] chr2 (2 HSPs)
chr2 (306-358)||(44648686-44648738)
chr2 (377-430)||(4068217-4068270)
[»] chr5 (1 HSPs)
chr5 (381-436)||(2361310-2361365)


Alignment Details
Target: chr3 (Bit Score: 410; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 9 - 438
Target Start/End: Original strand, 43489781 - 43490210
Alignment:
Q  9 gaagattgtagatgagaagccacagaagaagccctaatcacattatcatcataaatattccttggagcaggaatacccgaaaactgaaaacgatcataaa 108  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||    
T  43489781 gaagattgtagatgagaagccatagaagaagccctaatcacattatcatcataaacattccttgcaggaggaatacccgaaaactgaaaacgatcataaa 43489880  T
Q  109 agtttgtcgaatgctgagaagagttaggaaaaggtctagtatgaacaacaggatcagtagaagttgtaatagaaacaatcgaactcggtgaattcgaaac 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43489881 agtttgtcgaatgctgagaagagttaggaaaaggtctagtatgaacaacaggatcagtagaagttgtaatagaaacaatcgaactcggtgaattcgaaac 43489980  T
Q  209 gttccattgagtagtagtagtagctggtggagggttacgaagtgtaacattttcagggaaattgagtttggctttgttgcctctaaaacgaagagcagct 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43489981 gttccattgagtagtagtagtagctggtggagggttacgaagtgtaacattttcagggaaattgagtttggctttgttgcctctaaaacgaagagcagct 43490080  T
Q  309 tcatcatatgctctagcagcagcttcagctgtttcaaatgttcctaaccatactcttgctgctttgaatggatctcttatctctgctgcccattttcccc 408  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43490081 tcatcatatgctctagcagctgcttcagctgtttcaaatgttcctaaccatactcttgctgctttgaatggatctcttatctctgctgcccattttcccc 43490180  T
Q  409 atggtctctgtcttactcctctgtattttc 438  Q
    ||||||||||||||||||||||||||||||    
T  43490181 atggtctctgtcttactcctctgtattttc 43490210  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 303 - 418
Target Start/End: Original strand, 45013921 - 45014036
Alignment:
Q  303 gcagcttcatcatatgctctagcagcagcttcagctgtttcaaatgttcctaaccatactcttgctgctttgaatggatctcttatctctgctgcccatt 402  Q
    |||||||||||||||||    || ||||| ||||| |||||||||||||||| |||||| ||||| || ||    ||||| |  |||||||| ||||| |    
T  45013921 gcagcttcatcatatgcaacggctgcagcctcagccgtttcaaatgttcctagccatacccttgccgccttcttcggatcacgaatctctgcagcccact 45014020  T
Q  403 ttccccatggtctctg 418  Q
    |||||||||| |||||    
T  45014021 ttccccatggcctctg 45014036  T

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Target: chr8 (Bit Score: 118; Significance: 5e-60; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 253 - 438
Target Start/End: Original strand, 38653101 - 38653286
Alignment:
Q  253 taacattttcagggaaattgagtttggctttgttgcctctaaaacgaagagcagcttcatcatatgctctagcagcagcttcagctgtttcaaatgttcc 352  Q
    |||||||||||||||| |||||||| |||||||| ||||||||||| |  | ||||| |||||| ||| |||| ||| ||||||||||||||||||| ||    
T  38653101 taacattttcagggaagttgagttttgctttgtttcctctaaaacgcaatgaagcttgatcataggctttagctgcatcttcagctgtttcaaatgtacc 38653200  T
Q  353 taaccatactcttgctgctttgaatggatctcttatctctgctgcccattttccccatggtctctgtcttactcctctgtattttc 438  Q
    ||||||||||||||  |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  38653201 taaccatactcttgtagctttgaaaggatctcttatctctgctgcccattttccccatggcctctgtcttactcctctgtattttc 38653286  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 381 - 427
Target Start/End: Complemental strand, 41747995 - 41747949
Alignment:
Q  381 tctcttatctctgctgcccattttccccatggtctctgtcttactcc 427  Q
    ||||||||||| || |||||||||||||| ||||||||||| |||||    
T  41747995 tctcttatctccgccgcccattttccccaaggtctctgtctcactcc 41747949  T

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Target: chr1 (Bit Score: 89; Significance: 1e-42; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 254 - 434
Target Start/End: Original strand, 44331736 - 44331916
Alignment:
Q  254 aacattttcagggaaattgagtttggctttgttgcctctaaaacgaagagcagcttcatcatatgctctagcagcagcttcagctgtttcaaatgttcct 353  Q
    ||||||||||||||| |||||||| ||| |||| ||||| || |  |  ||||||||||| || ||||| || |||||||| || ||||||||||||||     
T  44331736 aacattttcagggaagttgagtttcgctctgtttcctctgaatcttaatgcagcttcatcgtaagctcttgctgcagcttctgcagtttcaaatgttcca 44331835  T
Q  354 aaccatactcttgctgctttgaatggatctcttatctctgctgcccattttccccatggtctctgtcttactcctctgtat 434  Q
    | |||||||||||||||||||  ||||||||  || |||||||||||||||||||||||||||||||||||||||||||||    
T  44331836 agccatactcttgctgctttgtgtggatctcgaatttctgctgcccattttccccatggtctctgtcttactcctctgtat 44331916  T

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Target: chr6 (Bit Score: 82; Significance: 1e-38; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 253 - 434
Target Start/End: Complemental strand, 13410055 - 13409874
Alignment:
Q  253 taacattttcagggaaattgagtttggctttgttgcctctaaaacgaagagcagcttcatcatatgctctagcagcagcttcagctgtttcaaatgttcc 352  Q
    |||||||||||||||| |||||||| ||| || | ||||| || |  |  |||||||||||||| || ||||| |||||||| ||||| || ||||||||    
T  13410055 taacattttcagggaagttgagttttgctctgcttcctctgaatctcaatgcagcttcatcataagccctagctgcagcttctgctgtgtcgaatgttcc 13409956  T
Q  353 taaccatactcttgctgctttgaatggatctcttatctctgctgcccattttccccatggtctctgtcttactcctctgtat 434  Q
    || ||||||||||  |||||||  |||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||    
T  13409955 tagccatactctttgtgctttgtgtggatctcttatttctgctgcccattttccccatggtctttgtctcactcctctgtat 13409874  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 303 - 430
Target Start/End: Complemental strand, 10554722 - 10554595
Alignment:
Q  303 gcagcttcatcatatgctctagcagcagcttcagctgtttcaaatgttcctaaccatactcttgctgctttgaatggatctcttatctctgctgcccatt 402  Q
    |||||||||||||| ||  |||| |||||||||||||||||||| || || | ||| ||||||||| ||||    ||||||||||| || ||||||||||    
T  10554722 gcagcttcatcataagcagtagctgcagcttcagctgtttcaaaggtgccaagccacactcttgctccttttttaggatctcttatttcagctgcccatt 10554623  T
Q  403 ttccccatggtctctgtcttactcctct 430  Q
    | ||||| ||||| || ||||| |||||    
T  10554622 tcccccaaggtctttgccttacacctct 10554595  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 302 - 365
Target Start/End: Complemental strand, 4038815 - 4038752
Alignment:
Q  302 agcagcttcatcatatgctctagcagcagcttcagctgtttcaaatgttcctaaccatactctt 365  Q
    |||||| |||||||| |||||||||||  |||||||||| ||||| ||||||||||| ||||||    
T  4038815 agcagcctcatcataagctctagcagcttcttcagctgtatcaaaagttcctaaccaaactctt 4038752  T

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Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 331 - 430
Target Start/End: Complemental strand, 6568990 - 6568891
Alignment:
Q  331 cttcagctgtttcaaatgttcctaaccatactcttgctgctttgaatggatctcttatctctgctgcccattttccccatggtctctgtcttactcctct 430  Q
    |||||||||| ||||||||||||||||| ||||| ||||||||   ||| || | ||| || ||||||||||||||||||||||||||||| ||||||||    
T  6568990 cttcagctgtatcaaatgttcctaaccaaactctagctgctttttttgggtcacgtatttcagctgcccattttccccatggtctctgtctcactcctct 6568891  T

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Target: chr7; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 331 - 430
Target Start/End: Complemental strand, 6583149 - 6583050
Alignment:
Q  331 cttcagctgtttcaaatgttcctaaccatactcttgctgctttgaatggatctcttatctctgctgcccattttccccatggtctctgtcttactcctct 430  Q
    |||||||||| ||||||||||||||||| ||||| ||||||||   ||| || | ||| || ||||||||||||||||||||||| ||||| ||||||||    
T  6583149 cttcagctgtgtcaaatgttcctaaccaaactctagctgctttttttgggtcacgtatttcagctgcccattttccccatggtctttgtctcactcctct 6583050  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 303 - 365
Target Start/End: Complemental strand, 3160346 - 3160284
Alignment:
Q  303 gcagcttcatcatatgctctagcagcagcttcagctgtttcaaatgttcctaaccatactctt 365  Q
    |||||||||||||| ||||| |||||  |||||||||| ||||| ||||||||||| ||||||    
T  3160346 gcagcttcatcataggctcttgcagcttcttcagctgtatcaaaagttcctaaccaaactctt 3160284  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 306 - 366
Target Start/End: Complemental strand, 1726310 - 1726250
Alignment:
Q  306 gcttcatcatatgctctagcagcagcttcagctgtttcaaatgttcctaaccatactcttg 366  Q
    ||||||||||||||||| || ||| |||| ||||||||||||||||||||||||| |||||    
T  1726310 gcttcatcatatgctcttgctgcatcttctgctgtttcaaatgttcctaaccatattcttg 1726250  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 306 - 358
Target Start/End: Original strand, 2428679 - 2428731
Alignment:
Q  306 gcttcatcatatgctctagcagcagcttcagctgtttcaaatgttcctaacca 358  Q
    |||||||||||||||||||| ||  |||||||||| |||||||||||||||||    
T  2428679 gcttcatcatatgctctagctgcttcttcagctgtctcaaatgttcctaacca 2428731  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 387 - 430
Target Start/End: Complemental strand, 33719006 - 33718963
Alignment:
Q  387 atctctgctgcccattttccccatggtctctgtcttactcctct 430  Q
    ||||| || |||||||||||||||||||||||||| ||||||||    
T  33719006 atctcagcagcccattttccccatggtctctgtctcactcctct 33718963  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 387 - 433
Target Start/End: Complemental strand, 33721025 - 33720979
Alignment:
Q  387 atctctgctgcccattttccccatggtctctgtcttactcctctgta 433  Q
    ||||| || ||||||||||||||||||||||| || |||||||||||    
T  33721025 atctcagcagcccattttccccatggtctctgcctcactcctctgta 33720979  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 306 - 358
Target Start/End: Original strand, 44648686 - 44648738
Alignment:
Q  306 gcttcatcatatgctctagcagcagcttcagctgtttcaaatgttcctaacca 358  Q
    ||||||||||||||| |||| ||  ||||||||||||||||||||||||||||    
T  44648686 gcttcatcatatgctttagctgcttcttcagctgtttcaaatgttcctaacca 44648738  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 430
Target Start/End: Original strand, 4068217 - 4068270
Alignment:
Q  377 tggatctcttatctctgctgcccattttccccatggtctctgtcttactcctct 430  Q
    ||||||||||||||| || ||  || ||||||||||||||| ||||||||||||    
T  4068217 tggatctcttatctccgcggcgtatcttccccatggtctctttcttactcctct 4068270  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 381 - 436
Target Start/End: Original strand, 2361310 - 2361365
Alignment:
Q  381 tctcttatctctgctgcccattttccccatggtctctgtcttactcctctgtattt 436  Q
    ||||||||||| || ||||||||||||||||||||||| || ||||| | ||||||    
T  2361310 tctcttatctccgccgcccattttccccatggtctctgcctcactccacggtattt 2361365  T

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