View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2859R-Insertion-11 (Length: 314)
Name: NF2859R-Insertion-11
Description: NF2859R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2859R-Insertion-11 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 9 - 314
Target Start/End: Original strand, 5995545 - 5995850
Alignment:
| Q |
9 |
tttttatctgcttgttaatttacttaagcagggtttagaacattggaaacatagaatgtctaatgatagattttcaaataacaaaaccactatagcttgt |
108 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5995545 |
tttttaactgcttgttaatttacttaagcagggtttagaacattggaaacacagaatgtctaatgatagattttcaaataacaaaaccactatagcttgt |
5995644 |
T |
|
| Q |
109 |
ctatgaagtgattaagtaataatgtgaatttttctctgaattgattaaaaaagtatctacccttgaggaaatctgtctctatcagcttaggcaattgcaa |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
5995645 |
ctatgaagtgattaagtaataatgtgaatttttctctgaattgattaaaaaagtatctacccttgaggaaatttgtctctatcagcttaggcaattgcaa |
5995744 |
T |
|
| Q |
209 |
atttacatcatattatgatttaaaataaaaatacatcatattgtccaactttgtgattaaccatggaaaggagcacacattccaactttattgtcaccat |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5995745 |
atttacatcatattatgatttaaaataaaaatacatcatattgtccaaccttgtgattaaccatggaaaggagcacacattccaactttattgtcaccat |
5995844 |
T |
|
| Q |
309 |
attctc |
314 |
Q |
| |
|
|||||| |
|
|
| T |
5995845 |
attctc |
5995850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University