View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2859R-Insertion-13 (Length: 206)

Name: NF2859R-Insertion-13
Description: NF2859R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2859R-Insertion-13
NF2859R-Insertion-13
[»] chr7 (2 HSPs)
chr7 (16-68)||(22348360-22348412)
chr7 (163-206)||(22348504-22348547)
[»] chr1 (2 HSPs)
chr1 (19-68)||(16001288-16001337)
chr1 (163-206)||(16001429-16001472)
[»] chr5 (2 HSPs)
chr5 (16-67)||(6837464-6837515)
chr5 (163-206)||(6837326-6837369)
[»] chr3 (2 HSPs)
chr3 (20-67)||(22598933-22598980)
chr3 (163-206)||(22599075-22599118)


Alignment Details
Target: chr7 (Bit Score: 45; Significance: 8e-17; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 22348360 - 22348412
Alignment:
Q  16 ctgctggtgttgcaccaacaactgggctctaattccatttaatggtaaaaaac 68  Q
    ||||||||||||||||| ||||||| |||||||||||||||||||||||||||    
T  22348360 ctgctggtgttgcaccagcaactggactctaattccatttaatggtaaaaaac 22348412  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 163 - 206
Target Start/End: Original strand, 22348504 - 22348547
Alignment:
Q  163 gggatattttggagtcaaatgtgacttgtactacacaacacatg 206  Q
    ||||||||||||||||||||||| ||||||||||||||||||||    
T  22348504 gggatattttggagtcaaatgtgccttgtactacacaacacatg 22348547  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 16001288 - 16001337
Alignment:
Q  19 ctggtgttgcaccaacaactgggctctaattccatttaatggtaaaaaac 68  Q
    |||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  16001288 ctggtgttgcaccagcaactgggctctaattccattttatggtaaaaaac 16001337  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 163 - 206
Target Start/End: Original strand, 16001429 - 16001472
Alignment:
Q  163 gggatattttggagtcaaatgtgacttgtactacacaacacatg 206  Q
    ||||||||||||||||||||||||||||||||||| | ||||||    
T  16001429 gggatattttggagtcaaatgtgacttgtactacagagcacatg 16001472  T

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Target: chr5 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 16 - 67
Target Start/End: Complemental strand, 6837515 - 6837464
Alignment:
Q  16 ctgctggtgttgcaccaacaactgggctctaattccatttaatggtaaaaaa 67  Q
    |||||||||||| |||| |||||||| |||||||||||||||||||||||||    
T  6837515 ctgctggtgttggaccagcaactggggtctaattccatttaatggtaaaaaa 6837464  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 163 - 206
Target Start/End: Complemental strand, 6837369 - 6837326
Alignment:
Q  163 gggatattttggagtcaaatgtgacttgtactacacaacacatg 206  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||    
T  6837369 gggatattttgaagtcaaatgtgacttgtactacacagcacatg 6837326  T

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Target: chr3 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 20 - 67
Target Start/End: Original strand, 22598933 - 22598980
Alignment:
Q  20 tggtgttgcaccaacaactgggctctaattccatttaatggtaaaaaa 67  Q
    |||||||| |||| ||||||||||||||||||||||||||||||||||    
T  22598933 tggtgttggaccagcaactgggctctaattccatttaatggtaaaaaa 22598980  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 163 - 206
Target Start/End: Original strand, 22599075 - 22599118
Alignment:
Q  163 gggatattttggagtcaaatgtgacttgtactacacaacacatg 206  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||    
T  22599075 gggatattttgaagtcaaatgtgacttgtactacacagcacatg 22599118  T

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