View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2859R-Insertion-3 (Length: 820)

Name: NF2859R-Insertion-3
Description: NF2859R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2859R-Insertion-3
NF2859R-Insertion-3
[»] chr5 (5 HSPs)
chr5 (9-820)||(39514816-39515640)
chr5 (17-56)||(3043125-3043164)
chr5 (17-56)||(11911930-11911969)
chr5 (13-55)||(34250473-34250515)
chr5 (17-55)||(39097189-39097227)
[»] chr3 (6 HSPs)
chr3 (113-156)||(3776626-3776669)
chr3 (17-55)||(1290706-1290744)
chr3 (17-55)||(3845234-3845272)
chr3 (17-55)||(52925733-52925771)
chr3 (117-190)||(5407008-5407081)
chr3 (17-54)||(34867309-34867346)
[»] chr7 (2 HSPs)
chr7 (17-55)||(45004910-45004948)
chr7 (113-156)||(29829307-29829350)
[»] chr2 (8 HSPs)
chr2 (17-55)||(37420319-37420357)
chr2 (17-55)||(15928556-15928594)
chr2 (17-55)||(37561632-37561670)
chr2 (17-55)||(40582674-40582712)
chr2 (17-55)||(43717267-43717305)
chr2 (18-47)||(7629788-7629817)
chr2 (17-46)||(16519371-16519400)
chr2 (17-54)||(42774958-42774995)
[»] chr4 (2 HSPs)
chr4 (17-49)||(50358142-50358174)
chr4 (17-55)||(49138957-49138995)
[»] scaffold0168 (1 HSPs)
scaffold0168 (17-55)||(31751-31789)
[»] chr8 (2 HSPs)
chr8 (17-55)||(8252722-8252760)
chr8 (17-55)||(41614769-41614807)
[»] chr6 (3 HSPs)
chr6 (17-55)||(34620811-34620849)
chr6 (17-55)||(34748248-34748286)
chr6 (17-54)||(29240575-29240612)
[»] chr1 (2 HSPs)
chr1 (17-55)||(2099808-2099846)
chr1 (18-55)||(24587835-24587872)


Alignment Details
Target: chr5 (Bit Score: 721; Significance: 0; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 721; E-Value: 0
Query Start/End: Original strand, 9 - 820
Target Start/End: Original strand, 39514816 - 39515640
Alignment:
Q  9 acctttataattgattctagaggtgtagaattgattttgacttgtttatctctacaattgatttttagcatc-------------aattcacacctacat 95  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||             ||||||| |||||||    
T  39514816 acctttataattgattctagaggtgtagaattgattttgacttgtttatctctacagttgatttttagcatcgaatataatattcaattcactcctacat 39514915  T
Q  96 aaatttatcgaaaattcaatcactttacgtttaactcaattttagccagaatcaattcattaaatgttaattttttgtcaccgcataatcaaacacatag 195  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39514916 aaatttatcgaaaattcaatcactttacatttaactcaattttagccagaatcaattcattaaatgttaattttttgtcaccgcataatcaaacacatag 39515015  T
Q  196 ttagttgctattatactttaggaatatccaatccatgcatatgaacctcaccaaaatatttgcatgaaacttttgaatttggaagcttattatggacaag 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39515016 ttagttgctattatactttaggaatatccaatccatgcatatgaacctcaccaaaatatttgcatgaaacttttgaatttggaagcttattatggacaag 39515115  T
Q  296 aaaattacattcttcatatgttgcagttgcatttgctaggctgttctatcctgctgaggctagggtagccatagagaatgctggggcagattcaacacca 395  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39515116 aaaattacattcttcatatgttgcagttgcatttgctacgctgttctatcctgctgaggctagggtagccatagagaatgctggggcagattcaacacca 39515215  T
Q  396 cgctatgtaagttcaacagctttgaagagcaatataaaagaaatagatctaaatgaaactccttctgttaggacaagaaaactccaattaagattacaat 495  Q
    ||||||| ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  39515216 cgctatgcaagttcaacagctttgaagggcaatataaaagaagtagatctaaatgaaactccttctgttagaacaagaaaactccaattaagattacaat 39515315  T
Q  496 cccttgtaaaaacaggtatgatcaaatgcatttttcattatcttgcttataatagtttatccataatctttatatgatcgtcaagtagctttgaagttac 595  Q
    ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  39515316 cccttttaaaaataggtatgatcaaatgcatttttcattatcttgcttataatagtttatccataatctttatatgatcgtcaaatagctttgaagttac 39515415  T
Q  596 taaaactcctccaattaaactgtgtgcagttgagaatggtaggcgcttttttccgcattgttctgaactgcttgataagtatctagacgatgatatgccg 695  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  39515416 taaaactcctccaattaaactgtgtgcagttgagaatggtaggcgtttttttccgcattgttctgaagtgcttgataagtatctagacgatgatatgccg 39515515  T
Q  696 gatgtttttgtcctagagaagggaacggaagaagagcagagaacaaagaaagcgcggttcatggaacttaaagatgaggtgctgaaggcatttcacaagg 795  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  39515516 gatgtttttgtcctagagaagggaacggaagaagagcagagagcaaagaaagcgcggttcatggaacttaaagatgaggtgcagaaggcatttcacaagg 39515615  T
Q  796 atatggctgaaaataaccaatcagg 820  Q
    |||||||||||||||||||||||||    
T  39515616 atatggctgaaaataaccaatcagg 39515640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 56
Target Start/End: Complemental strand, 3043164 - 3043125
Alignment:
Q  17 aattgattctagaggtgtagaattgattttgacttgttta 56  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  3043164 aattgattctagaggtgtagaattgattttgacatgttta 3043125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 56
Target Start/End: Complemental strand, 11911969 - 11911930
Alignment:
Q  17 aattgattctagaggtgtagaattgattttgacttgttta 56  Q
    |||||||||||||| |||| ||||||||||||||||||||    
T  11911969 aattgattctagagatgtaaaattgattttgacttgttta 11911930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 13 - 55
Target Start/End: Complemental strand, 34250515 - 34250473
Alignment:
Q  13 ttataattgattctagaggtgtagaattgattttgacttgttt 55  Q
    ||||||||||||||||| ||||||||||| ||||||| |||||    
T  34250515 ttataattgattctagatgtgtagaattgtttttgacatgttt 34250473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 17 - 55
Target Start/End: Original strand, 39097189 - 39097227
Alignment:
Q  17 aattgattctagaggtgtagaattgattttgacttgttt 55  Q
    |||||||| |||||||||||||||||||||||| |||||    
T  39097189 aattgattatagaggtgtagaattgattttgacatgttt 39097227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000008; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 113 - 156
Target Start/End: Original strand, 3776626 - 3776669
Alignment:
Q  113 aatcactttacgtttaactcaattttagccagaatcaattcatt 156  Q
    ||||||||||| || |||||||||||||||||||||||||||||    
T  3776626 aatcactttacattcaactcaattttagccagaatcaattcatt 3776669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 55
Target Start/End: Original strand, 1290706 - 1290744
Alignment:
Q  17 aattgattctagaggtgtagaattgattttgacttgttt 55  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  1290706 aattgattctagaggtgtagaattgattttgatttgttt 1290744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 55
Target Start/End: Complemental strand, 3845272 - 3845234
Alignment:
Q  17 aattgattctagaggtgtagaattgattttgacttgttt 55  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  3845272 aattgattctagaggtgtagaattgattttgacatgttt 3845234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 17 - 55
Target Start/End: Complemental strand, 52925771 - 52925733
Alignment:
Q  17 aattgattctagaggtgtagaattgattttgacttgttt 55  Q
    ||||||||||||||||||| ||||||||||||| |||||    
T  52925771 aattgattctagaggtgtataattgattttgacatgttt 52925733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 190
Target Start/End: Original strand, 5407008 - 5407081
Alignment:
Q  117 actttacgtttaactcaattttagccagaatcaattcattaaatgttaattttttgtcaccgcataatcaaaca 190  Q
    ||||||| || |||||||||||||| |||||||||||| | ||  | |||||||| ||||| ||||| ||||||    
T  5407008 actttaccttcaactcaattttagctagaatcaattcactcaaaatcaattttttctcaccacataaccaaaca 5407081  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 34867346 - 34867309
Alignment:
Q  17 aattgattctagaggtgtagaattgattttgacttgtt 54  Q
    ||||||||||| ||||||||||||||||||||| ||||    
T  34867346 aattgattctacaggtgtagaattgattttgacatgtt 34867309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 55
Target Start/End: Original strand, 45004910 - 45004948
Alignment:
Q  17 aattgattctagaggtgtagaattgattttgacttgttt 55  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  45004910 aattgattctagaggtgtagaattgattttgacatgttt 45004948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 156
Target Start/End: Complemental strand, 29829350 - 29829307
Alignment:
Q  113 aatcactttacgtttaactcaattttagccagaatcaattcatt 156  Q
    ||||||||||| || |||||| ||||||||||||||||||||||    
T  29829350 aatcactttacattcaactcatttttagccagaatcaattcatt 29829307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000003; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 55
Target Start/End: Complemental strand, 37420357 - 37420319
Alignment:
Q  17 aattgattctagaggtgtagaattgattttgacttgttt 55  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  37420357 aattgattctagaggtgtagaattgattttgacatgttt 37420319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 17 - 55
Target Start/End: Complemental strand, 15928594 - 15928556
Alignment:
Q  17 aattgattctagaggtgtagaattgattttgacttgttt 55  Q
    |||||||||| |||||||||||||||||||||| |||||    
T  15928594 aattgattctggaggtgtagaattgattttgacatgttt 15928556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 17 - 55
Target Start/End: Original strand, 37561632 - 37561670
Alignment:
Q  17 aattgattctagaggtgtagaattgattttgacttgttt 55  Q
    ||||||||||||||||||| ||||||||||||| |||||    
T  37561632 aattgattctagaggtgtaaaattgattttgacatgttt 37561670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 17 - 55
Target Start/End: Original strand, 40582674 - 40582712
Alignment:
Q  17 aattgattctagaggtgtagaattgattttgacttgttt 55  Q
    |||||||||||||||||||||||||||||| || |||||    
T  40582674 aattgattctagaggtgtagaattgattttaacatgttt 40582712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 17 - 55
Target Start/End: Original strand, 43717267 - 43717305
Alignment:
Q  17 aattgattctagaggtgtagaattgattttgacttgttt 55  Q
    ||||||||||||| ||||||||||||||||||| |||||    
T  43717267 aattgattctagatgtgtagaattgattttgacatgttt 43717305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 47
Target Start/End: Original strand, 7629788 - 7629817
Alignment:
Q  18 attgattctagaggtgtagaattgattttg 47  Q
    ||||||||||||||||||||||||||||||    
T  7629788 attgattctagaggtgtagaattgattttg 7629817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 46
Target Start/End: Original strand, 16519371 - 16519400
Alignment:
Q  17 aattgattctagaggtgtagaattgatttt 46  Q
    ||||||||||||||||||||||||||||||    
T  16519371 aattgattctagaggtgtagaattgatttt 16519400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 42774995 - 42774958
Alignment:
Q  17 aattgattctagaggtgtagaattgattttgacttgtt 54  Q
    |||||||||||||||| |||||||||||||||| ||||    
T  42774995 aattgattctagaggtatagaattgattttgacatgtt 42774958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 50358174 - 50358142
Alignment:
Q  17 aattgattctagaggtgtagaattgattttgac 49  Q
    |||||||||||||||||||||||||||||||||    
T  50358174 aattgattctagaggtgtagaattgattttgac 50358142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 17 - 55
Target Start/End: Complemental strand, 49138995 - 49138957
Alignment:
Q  17 aattgattctagaggtgtagaattgattttgacttgttt 55  Q
    |||||||||||||||||||||||||||| |||| |||||    
T  49138995 aattgattctagaggtgtagaattgattctgacatgttt 49138957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 17 - 55
Target Start/End: Original strand, 31751 - 31789
Alignment:
Q  17 aattgattctagaggtgtagaattgattttgacttgttt 55  Q
    |||||||||||||||||||||||||||| |||| |||||    
T  31751 aattgattctagaggtgtagaattgattctgacatgttt 31789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 17 - 55
Target Start/End: Original strand, 8252722 - 8252760
Alignment:
Q  17 aattgattctagaggtgtagaattgattttgacttgttt 55  Q
    |||||||||||||||||||||| |||||||||| |||||    
T  8252722 aattgattctagaggtgtagaactgattttgacatgttt 8252760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 17 - 55
Target Start/End: Original strand, 41614769 - 41614807
Alignment:
Q  17 aattgattctagaggtgtagaattgattttgacttgttt 55  Q
    |||||||||||||||| || |||||||||||||||||||    
T  41614769 aattgattctagaggtataaaattgattttgacttgttt 41614807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000007; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 17 - 55
Target Start/End: Original strand, 34620811 - 34620849
Alignment:
Q  17 aattgattctagaggtgtagaattgattttgacttgttt 55  Q
    ||||||||||| ||||||||||||||||||||| |||||    
T  34620811 aattgattctaaaggtgtagaattgattttgacatgttt 34620849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 17 - 55
Target Start/End: Original strand, 34748248 - 34748286
Alignment:
Q  17 aattgattctagaggtgtagaattgattttgacttgttt 55  Q
    ||||||||||| ||||||||||||||||||||| |||||    
T  34748248 aattgattctaaaggtgtagaattgattttgacatgttt 34748286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 29240612 - 29240575
Alignment:
Q  17 aattgattctagaggtgtagaattgattttgacttgtt 54  Q
    ||||||||||||||||||| ||||||||||||| ||||    
T  29240612 aattgattctagaggtgtaaaattgattttgacatgtt 29240575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 17 - 55
Target Start/End: Complemental strand, 2099846 - 2099808
Alignment:
Q  17 aattgattctagaggtgtagaattgattttgacttgttt 55  Q
    |||||||||| ||||||||||||||||| ||||||||||    
T  2099846 aattgattctggaggtgtagaattgattatgacttgttt 2099808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 24587835 - 24587872
Alignment:
Q  18 attgattctagaggtgtagaattgattttgacttgttt 55  Q
    ||||||||||||||||||||||||||| |||| |||||    
T  24587835 attgattctagaggtgtagaattgattgtgacatgttt 24587872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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