View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2859R-Insertion-5 (Length: 738)
Name: NF2859R-Insertion-5
Description: NF2859R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2859R-Insertion-5 |
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Alignment Details
Target: chr4 (Bit Score: 123; Significance: 8e-63; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 123; E-Value: 8e-63
Query Start/End: Original strand, 223 - 428
Target Start/End: Original strand, 22463765 - 22463958
Alignment:
| Q |
223 |
aaaagaaagcaccgttgcagttcacgttttaacgatgacaatgagaaacctccgatttcagctaagtctaatcactggaaaactgttcgatcaagtccgg |
322 |
Q |
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| T |
22463765 |
aaaagaaagcaccgttgcagttcacgttttaacgatgacaatgagaaacctcagatttcagctaagtctagtcactggaaaactgttcgatcaagtccag |
22463864 |
T |
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| Q |
323 |
aaagtactgtcgccacctctctctggttttgtaaatgagttttgttttgttgccttaca-gaggaaaagtgaatgctttgagagtagcgaagacaaagaa |
421 |
Q |
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| T |
22463865 |
aaggtactgtcaccgcctctctctg-------------gttttgttttgttgccttacaggaggaaaagtgaatgctttgagagcagcgaagacgaagaa |
22463951 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 531 - 588
Target Start/End: Original strand, 22463982 - 22464039
Alignment:
| Q |
531 |
ataggaataggtatggtgggttgattgtaccgaggagaaaaataggaataggtggaat |
588 |
Q |
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| T |
22463982 |
ataggtataggtatggtgggttgattgtaccgaggagaaaaataggaataggtggaat |
22464039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 89; Significance: 2e-42; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 160 - 356
Target Start/End: Original strand, 33926580 - 33926775
Alignment:
| Q |
160 |
agattactccagtgaatacggcggttaacggagttgaggactctgttcaagtttccagtttgcaaaagaaagcaccgttgcagttcacgttttaacgatg |
259 |
Q |
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| T |
33926580 |
agattactccggtgaaaacaacggttgttggagttgaggactccgttcatgtttccaatttgcagaagaaagtaccgttgcagttcgcattt-aacgatg |
33926678 |
T |
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| Q |
260 |
acaatgagaaacctccgatttcagctaagtctaatcactggaaaactgttcgatcaagtccggaaagtactgtcgccacctctctctggttttgtaa |
356 |
Q |
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| T |
33926679 |
agaatgagaaacctccgatttcagctaggtctagtcaccggaaaaccgttagatcaagtccagaaggtactgtcaccgtctctctctggttttgtaa |
33926775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 382 - 462
Target Start/End: Original strand, 33926885 - 33926959
Alignment:
| Q |
382 |
gaggaaaagtgaatgctttgagagtagcgaagacaaagaagaagaagcaagaaacattggagagtacatggaacacgataa |
462 |
Q |
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| T |
33926885 |
gaggaaaggtgaatgcgttgagagtagcgaagac------gaagaagcaggaaacattggagagtacgtggaagacgataa |
33926959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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