View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2859R-Insertion-6 (Length: 590)
Name: NF2859R-Insertion-6
Description: NF2859R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2859R-Insertion-6 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 343 - 590
Target Start/End: Original strand, 47344716 - 47344963
Alignment:
| Q |
343 |
atacaagcaaaatcaaggcatttcattaattaaaatttgggttatacagaacagacggaaacatgataaaaaatagcgtgaggagaatacgatagggatg |
442 |
Q |
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| T |
47344716 |
atacaagcaaaatcaaggcatttcattaattaaaatttgggttatacagaacagacggaaacatgataaaaaatagcgtgaggagaatacgatagggatg |
47344815 |
T |
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| Q |
443 |
cttgcgctaaacatgagcactactatttgttggtggcctggaaaaaacaaccctatagctgttatggcatataccattagactatgtttacttttcagtc |
542 |
Q |
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| T |
47344816 |
cttgcgctaaacatgagcactactatttgttggtcgcctggaaaaaacaaccctataggtgttatggcatataccattagactatgtttacttttcagtc |
47344915 |
T |
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| Q |
543 |
aatattgcatacaacgatggcttaaatttctgaactaaaggttaatgc |
590 |
Q |
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| T |
47344916 |
aatattgcatacaacgatggcttaaatttctgaactaaaggttaatgc |
47344963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 9 - 283
Target Start/End: Original strand, 47344383 - 47344656
Alignment:
| Q |
9 |
ataacygacttagttgatcaatttatgcagattaagnnnnnnnnntgtatgcatagatgaaagagagaatcatacttttaatgtaaagagtatccatcat |
108 |
Q |
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| T |
47344383 |
ataactgacttagttgatcaatttatgcagattaagaaaaaaaa-tgtatgcatagatgaaagagagaatcatacttttaatgtaaagagtttccatcat |
47344481 |
T |
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| Q |
109 |
aatcataaatgtaatgcaaatagtattatttagatgatataactattgaaaatggaagatagttggtcatttttggacaaattatttttacaaacgaatc |
208 |
Q |
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| T |
47344482 |
aatcataaatgtaatgcaaatagtattaattagatgatataactattgaaaatggaagatagttggtcattttcggacaaattatttttacaaaggaatc |
47344581 |
T |
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| Q |
209 |
agttattttggaacggagggagtgggacactaatattttctttattccttgcttcttgtatttgccatgcttcat |
283 |
Q |
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| T |
47344582 |
agttattttggaacggagggagtgggacactaatattttctttattccttgcttcttgtatttgccatgcttcat |
47344656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 2e-31; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 346 - 443
Target Start/End: Original strand, 1495098 - 1495190
Alignment:
| Q |
346 |
caagcaaaatcaaggcatttcattaattaaaatttgggttatacagaacagacggaaacatgataaaaaatagcgtgaggagaatacgatagggatgc |
443 |
Q |
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| T |
1495098 |
caagcaaaatcaaggcatttcattaattaaaatttgggttat-----acagacggaaacataataaaaaatagtgtgaggagaatacgatagggatgc |
1495190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 478 - 571
Target Start/End: Original strand, 1495189 - 1495288
Alignment:
| Q |
478 |
gcctggaaaaaacaaccctata--gctgttatggc----atataccattagactatgtttacttttcagtcaatattgcatacaacgatggcttaaattt |
571 |
Q |
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| T |
1495189 |
gcctggaaaaaacaaccctataagtgtgttatggcatatatataccattagactatgtttacttttcagtcaatattgcatacaacgatggcttaaattt |
1495288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 223 - 283
Target Start/End: Complemental strand, 11827782 - 11827722
Alignment:
| Q |
223 |
ggagggagtgggacactaatattttctttattccttgcttcttgtatttgccatgcttcat |
283 |
Q |
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||||||||| | |||||| |||||||||||||||||||||||| ||||||| |||||||| |
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| T |
11827782 |
ggagggagtagtacactagtattttctttattccttgcttcttatatttgcgttgcttcat |
11827722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 44
Target Start/End: Complemental strand, 23096268 - 23096233
Alignment:
| Q |
9 |
ataacygacttagttgatcaatttatgcagattaag |
44 |
Q |
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| T |
23096268 |
ataactgacttagttgatcaattcatgcagattaag |
23096233 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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