View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2859R-Insertion-7 (Length: 527)

Name: NF2859R-Insertion-7
Description: NF2859R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2859R-Insertion-7
NF2859R-Insertion-7
[»] chr1 (9 HSPs)
chr1 (98-527)||(28237694-28238122)
chr1 (98-527)||(42772603-42773032)
chr1 (100-172)||(47914459-47914531)
chr1 (9-103)||(28238145-28238239)
chr1 (9-101)||(42772486-42772578)
chr1 (9-74)||(23260981-23261046)
chr1 (98-168)||(51854373-51854443)
chr1 (9-74)||(47914585-47914650)
chr1 (9-101)||(51854468-51854560)
[»] chr8 (2 HSPs)
chr8 (98-527)||(9374966-9375395)
chr8 (17-103)||(9375418-9375504)
[»] chr5 (3 HSPs)
chr5 (98-527)||(29656422-29656847)
chr5 (9-103)||(29656870-29656964)
chr5 (8-61)||(10647715-10647768)
[»] chr3 (16 HSPs)
chr3 (98-391)||(41828332-41828625)
chr3 (414-527)||(41828625-41828738)
chr3 (98-168)||(14175572-14175642)
chr3 (9-101)||(41828215-41828307)
chr3 (105-168)||(952892-952955)
chr3 (9-100)||(54418935-54419026)
chr3 (98-172)||(54419052-54419126)
chr3 (9-74)||(14175693-14175758)
chr3 (9-101)||(41828038-41828131)
chr3 (9-74)||(953011-953076)
chr3 (116-163)||(50833909-50833956)
chr3 (116-163)||(50841897-50841944)
chr3 (183-318)||(42658484-42658621)
chr3 (8-61)||(9640274-9640327)
chr3 (8-61)||(48760784-48760837)
chr3 (98-130)||(41828156-41828188)
[»] chr2 (6 HSPs)
chr2 (102-527)||(9059391-9059801)
chr2 (98-168)||(43800277-43800347)
chr2 (9-101)||(9059830-9059922)
chr2 (9-72)||(12447157-12447220)
chr2 (9-74)||(43800399-43800464)
chr2 (12-61)||(41750618-41750667)
[»] chr7 (8 HSPs)
chr7 (253-527)||(39445259-39445533)
chr7 (98-226)||(39445130-39445258)
chr7 (9-103)||(39445013-39445107)
chr7 (101-168)||(40722747-40722814)
chr7 (9-74)||(48829733-48829798)
chr7 (9-70)||(40722626-40722687)
chr7 (9-74)||(85271-85336)
chr7 (98-144)||(48829850-48829896)
[»] scaffold0007 (2 HSPs)
scaffold0007 (102-172)||(252369-252439)
scaffold0007 (9-74)||(252248-252313)
[»] chr6 (7 HSPs)
chr6 (98-172)||(29533950-29534023)
chr6 (98-168)||(29535490-29535560)
chr6 (98-168)||(29535720-29535790)
chr6 (98-172)||(29535260-29535330)
chr6 (9-101)||(29535815-29535907)
chr6 (9-52)||(29535398-29535441)
chr6 (9-52)||(29535628-29535671)
[»] chr4 (4 HSPs)
chr4 (98-168)||(6980664-6980734)
chr4 (9-74)||(16032600-16032665)
chr4 (9-74)||(56478894-56478959)
chr4 (9-72)||(6980548-6980611)


Alignment Details
Target: chr1 (Bit Score: 382; Significance: 0; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 98 - 527
Target Start/End: Complemental strand, 28238122 - 28237694
Alignment:
Q  98 ttggaacaaacctcctagcatttaccaatatatgttattaataacaatgatattttccaaagcaaaaatttgacccatatatgctatttgaaattcaatt 197  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  28238122 ttggaacaaacctactagcatttaccaatatatgttattaataacaatgatattttc-aaagcaaaaatttgacccatatatgctatttgaaattcaatt 28238024  T
Q  198 tctccctcattcactccttattttgtgtatttcgaaattagcaattagcctagctattgttgtgtcccttcctattttcatgcagcatttagtgcattct 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28238023 tctccctcattcactccttattttgtgtatttcgaaattagcaattagcctagctattgttgtgtcccttcctattttcatgcagcatttagtgcattct 28237924  T
Q  298 ttactgaataattggacggttccatgatatcagacttttagaatgcattgaaattcatcagcttttaatattacggttccaactaaaaacgaattatcta 397  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||      
T  28237923 ttactgaataattggacggttccatgatatcagacttttagaatgcattgaaattcctcagcttttaatattacggttccagctaaaaacgaattatccc 28237824  T
Q  398 tcttcttcctcatcactcaccactctgtagtctctctctttctactaatcttctttcatttgcttctacattaatttctcagcaacgagcaacacaccat 497  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||| ||||||    
T  28237823 tcttcttcctcatcactcaccactctgtagtctctctcttcctactaatattctttcatttgcttctacaataatttctcagcaacgagcaactcaccat 28237724  T
Q  498 tttctcatcggaaacctgtccctccacctt 527  Q
    |||||||||||||| |||||||||||||||    
T  28237723 tttctcatcggaaatctgtccctccacctt 28237694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 98 - 527
Target Start/End: Original strand, 42772603 - 42773032
Alignment:
Q  98 ttggaacaaacctcctagcatttaccaatatatgttattaataacaatgatattttccaaagcaaaaatttgacccatatatgctatttgaaattcaatt 197  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||    
T  42772603 ttggaacaaacctactagcatttaccaatatatgttattaataacaatgatattttccaaagcaaaaatttgaccaatatatgctatttcaatttcaatt 42772702  T
Q  198 tctccctcattcactccttattttgtgtatttcgaaattagcaattagcctagctattgttgtgtcccttcctattttcatgcagcatttagtgcattct 297  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  42772703 tctccctcattcacttcttattttgtgtatttcgaaattagcaattagcctagctattgttgtgtcccttcctattttcatgcagcatttggtgcattct 42772802  T
Q  298 ttactgaataattggacggttccatgatatcagacttttagaatgcattgaaattcatcagcttttaatattacggttccaactaaaaacgaattatcta 397  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |||||||||||||||||     
T  42772803 ttactgaataattggacggttccatgatatcagacttttagaatgcattgaaattcctcaccttttaatattacggttccagctaaaaacgaattatctc 42772902  T
Q  398 tcttcttcctcatcactcaccactctgtagtctctctctttctactaatcttctttcatttgcttctacattaatttctcagcaacgagcaacacaccat 497  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||    
T  42772903 tcttcttcctcatcactcaccactctgtagtctctctctttctactaatcttctttcatttgcttctacaataatttctcagcaacgagcaactcaccat 42773002  T
Q  498 tttctcatcggaaacctgtccctccacctt 527  Q
    ||||||||||||||||||||||||||||||    
T  42773003 tttctcatcggaaacctgtccctccacctt 42773032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 100 - 172
Target Start/End: Complemental strand, 47914531 - 47914459
Alignment:
Q  100 ggaacaaacctcctagcatttaccaatatatgttattaataacaatgatattttccaaagcaaaaatttgacc 172  Q
    |||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47914531 ggaacaaacctattagcatttaccaatatatgttattaataacaatgatattttccaaagcaaaaatttgacc 47914459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 9 - 103
Target Start/End: Complemental strand, 28238239 - 28238145
Alignment:
Q  9 gcaacaacttaaccctaaaaatttagctccaaaattgcagcattaaatgctaagtgagataaccctnnnnnnntttggccctaaagtgtttggaa 103  Q
    |||||||||||||| || |||||| |||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||    
T  28238239 gcaacaacttaaccttagaaatttggctccaaaattgcagcattaaatgctaagtgagataaccctaaaaaaatttggccctaaagtgtttggaa 28238145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 9 - 101
Target Start/End: Original strand, 42772486 - 42772578
Alignment:
Q  9 gcaacaacttaaccctaaaaatttagctccaaaattgcagcattaaatgctaagtgagataaccctnnnnnnntttggccctaaagtgtttgg 101  Q
    ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||    
T  42772486 gcaacaacttaaccctagaaatttggctccaaaattgcagcattaaatgctaagtgagataaccctaaaaaaaattggccctaaagtgtttgg 42772578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 9 - 74
Target Start/End: Original strand, 23260981 - 23261046
Alignment:
Q  9 gcaacaacttaaccctaaaaatttagctccaaaattgcagcattaaatgctaagtgagataaccct 74  Q
    ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||    
T  23260981 gcaacaacttaaccctagaaatttggctccaaaattgcagcattaaatgctaagtgagataaccct 23261046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 98 - 168
Target Start/End: Complemental strand, 51854443 - 51854373
Alignment:
Q  98 ttggaacaaacctcctagcatttaccaatatatgttattaataacaatgatattttccaaagcaaaaattt 168  Q
    ||||||||||||| || ||| |||||||||||||||||||||||||||||||||||||||||||| |||||    
T  51854443 ttggaacaaacctactggcacttaccaatatatgttattaataacaatgatattttccaaagcaagaattt 51854373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 47914650 - 47914585
Alignment:
Q  9 gcaacaacttaaccctaaaaatttagctccaaaattgcagcattaaatgctaagtgagataaccct 74  Q
    |||||||||||||| || |||||| |||||||||||||||||||||||||||||||||||||||||    
T  47914650 gcaacaacttaaccttagaaatttggctccaaaattgcagcattaaatgctaagtgagataaccct 47914585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 9 - 101
Target Start/End: Complemental strand, 51854560 - 51854468
Alignment:
Q  9 gcaacaacttaaccctaaaaatttagctccaaaattgcagcattaaatgctaagtgagataaccctnnnnnnntttggccctaaagtgtttgg 101  Q
    ||||||||||||||||| |||||| ||||||| |||||| ||||||||||||| ||||||||||||       |||||| |||||||||||||    
T  51854560 gcaacaacttaaccctagaaatttggctccaagattgcaacattaaatgctaaatgagataaccctaaaattttttggctctaaagtgtttgg 51854468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 374; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 98 - 527
Target Start/End: Complemental strand, 9375395 - 9374966
Alignment:
Q  98 ttggaacaaacctcctagcatttaccaatatatgttattaataacaatgatattttccaaagcaaaaatttgacccatatatgctatttgaaattcaatt 197  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||    
T  9375395 ttggaacaaacctactagcatttaccaatatatgttattaataacaatgatattttccaaagcaaaaatttgaccatgatatgctatttgaaattcaatt 9375296  T
Q  198 tctccctcattcactccttattttgtgtatttcgaaattagcaattagcctagctattgttgtgtcccttcctattttcatgcagcatttagtgcattct 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  9375295 tctccctcattcactccttattttgtgtatttcgaaattagcaattagcctagctattgttgtgtcccttcctattttcatgcaatatttagtgcattct 9375196  T
Q  298 ttactgaataattggacggttccatgatatcagacttttagaatgcattgaaattcatcagcttttaatattacggttccaactaaaaacgaattatcta 397  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | ||||||||||||||| |     
T  9375195 ttactgaataattggacggttccatgatatcagacttttagaatgcattgaaattcctcagcttttaatattacggttctagctaaaaacgaattatatc 9375096  T
Q  398 tcttcttcctcatcactcaccactctgtagtctctctctttctactaatcttctttcatttgcttctacattaatttctcagcaacgagcaacacaccat 497  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| ||||||    
T  9375095 tcttcttcctcatcactcaccactctgtagtctctctctttctactaatcttctttcatttgcttctacaatattttctcagcaacgagcaactcaccat 9374996  T
Q  498 tttctcatcggaaacctgtccctccacctt 527  Q
    ||||||||||||||||||||||||||||||    
T  9374995 tttctcatcggaaacctgtccctccacctt 9374966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 17 - 103
Target Start/End: Complemental strand, 9375504 - 9375418
Alignment:
Q  17 ttaaccctaaaaatttagctccaaaattgcagcattaaatgctaagtgagataaccctnnnnnnntttggccctaaagtgtttggaa 103  Q
    |||| |||| |||||| ||||||||| |||| ||||||||||||||||||||||||||       ||||||||||||||||||||||    
T  9375504 ttaatcctagaaatttggctccaaaactgcaacattaaatgctaagtgagataaccctaaaaaaatttggccctaaagtgtttggaa 9375418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 367; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 98 - 527
Target Start/End: Complemental strand, 29656847 - 29656422
Alignment:
Q  98 ttggaacaaacctcctagcatttaccaatatatgttattaataacaatgatattttccaaagcaaaaatttgacccatatatgctatttgaaattcaatt 197  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29656847 ttggaacaaacctactagcatttaccaatatatgttattaataacaatgatattttccaaagcaaaaatttgacccatatatgctatttgaaattcaatt 29656748  T
Q  198 tctccctcattcactccttattttgtgtatttcgaaattagcaattagcctagctattgttgtgtcccttcctattttcatgcagcatttagtgcattct 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29656747 tctccctcattcactccttattttgtgtatttcgaaattagcaattagcctagctattgttgtgtcccttcctattttcatgcagcatttagtgcattct 29656648  T
Q  298 ttactgaataattggacggttccatgatatcagacttttagaatgcattgaaattcatcagcttttaatattacggttccaactaaaaacgaattatcta 397  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |||||||||||||||||     
T  29656647 ttactgaataattggacggttccatgatatcagacttttagaaagcattgaaattcctcagcttttaatattacggttccagctaaaaacgaattatctc 29656548  T
Q  398 tcttcttcctcatcactcaccactctgtagtctctctctttctactaatcttctttcatttgcttctacattaatttctcagcaacgagc-aacacacca 496  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||     |||| ||| |||||    
T  29656547 tcttcttcctcatcactcaccactatgtagtctctctctttctactaatcttctttcatttgcttctacaataatttctca-----gagcaaactcacca 29656453  T
Q  497 ttttctcatcggaaacctgtccctccacctt 527  Q
    |||||||||||||||||||||| ||||||||    
T  29656452 ttttctcatcggaaacctgtccttccacctt 29656422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 9 - 103
Target Start/End: Complemental strand, 29656964 - 29656870
Alignment:
Q  9 gcaacaacttaaccctaaaaatttagctccaaaattgcagcattaaatgctaagtgagataaccctnnnnnnntttggccctaaagtgtttggaa 103  Q
    ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||    
T  29656964 gcaacaacttaaccctataaatttggctccaaaattgcagcattaaatgctaagtgagataaccctacaaaaatttggccctaaagtgtttggaa 29656870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 10647768 - 10647715
Alignment:
Q  8 agcaacaacttaaccctaaaaatttagctccaaaattgcagcattaaatgctaa 61  Q
    ||||||||||||||||||||  ||| |||| |||| ||||||||| ||||||||    
T  10647768 agcaacaacttaaccctaaatttttggctctaaaactgcagcatttaatgctaa 10647715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 98 - 391
Target Start/End: Original strand, 41828332 - 41828625
Alignment:
Q  98 ttggaacaaacctcctagcatttaccaatatatgttattaataacaatgatattttccaaagcaaaaatttgacccatatatgctatttgaaattcaatt 197  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  41828332 ttggaacaaacctactagcatttaccaatatatgttattaataacaatgatattttccaaagcaaaaatttgacccatatatgctatttgaatttcaatt 41828431  T
Q  198 tctccctcattcactccttattttgtgtatttcgaaattagcaattagcctagctattgttgtgtcccttcctattttcatgcagcatttagtgcattct 297  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41828432 tctccctcattcacttcttattttgtgtatttcgaaattagcaattagcctagctattgttgtgtcccttcctattttcatgcagcatttagtgcattct 41828531  T
Q  298 ttactgaataattggacggttccatgatatcagacttttagaatgcattgaaattcatcagcttttaatattacggttccaactaaaaacgaat 391  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| ||||||||||||    
T  41828532 ttgctgaataattggacggttccatgatatcagacttttagaatgcattgaaattcctcaccttttaatattacggttccagctaaaaacgaat 41828625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 414 - 527
Target Start/End: Original strand, 41828625 - 41828738
Alignment:
Q  414 tcaccactctgtagtctctctctttctactaatcttctttcatttgcttctacattaatttctcagcaacgagcaacacaccattttctcatcggaaacc 513  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||    
T  41828625 tcaccactctgtagtctctctctttctactaatcttctttcatttgcttctacaataatttctcagcaacgagcaactcaccattttctcatcggaaacc 41828724  T
Q  514 tgtccctccacctt 527  Q
    | ||||||||||||    
T  41828725 tatccctccacctt 41828738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 98 - 168
Target Start/End: Complemental strand, 14175642 - 14175572
Alignment:
Q  98 ttggaacaaacctcctagcatttaccaatatatgttattaataacaatgatattttccaaagcaaaaattt 168  Q
    ||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  14175642 ttggaacaaacctactagcatttatcaatatatgttattaataacaatgatattttccaaagcaaaaattt 14175572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 9 - 101
Target Start/End: Original strand, 41828215 - 41828307
Alignment:
Q  9 gcaacaacttaaccctaaaaatttagctccaaaattgcagcattaaatgctaagtgagataaccctnnnnnnntttggccctaaagtgtttgg 101  Q
    ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||    
T  41828215 gcaacaacttaaccctagaaatttggctccaaaattgcagcattaaatgctaagtgagataaccctaaaaaaaattggccctaaagtgtttgg 41828307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 105 - 168
Target Start/End: Complemental strand, 952955 - 952892
Alignment:
Q  105 aaacctcctagcatttaccaatatatgttattaataacaatgatattttccaaagcaaaaattt 168  Q
    |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  952955 aaacctactagcacttaccaatatatgttattaataacaatgatattttccaaagcaaaaattt 952892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 9 - 100
Target Start/End: Original strand, 54418935 - 54419026
Alignment:
Q  9 gcaacaacttaaccctaaaaatttagctccaaaattgcagcattaaatgctaagtgagataaccctnnnnnnntttggccctaaagtgtttg 100  Q
    ||||||||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||       |||||| ||||||||||||    
T  54418935 gcaacaacttaaccctagaaatttggctccaaaattgcagcattaaatgctaaatgagataaccctaaatttttttggctctaaagtgtttg 54419026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 98 - 172
Target Start/End: Original strand, 54419052 - 54419126
Alignment:
Q  98 ttggaacaaacctcctagcatttaccaatatatgttattaataacaatgatattttccaaagcaaaaatttgacc 172  Q
    ||||||||||||| |||||| |||||||||||||||||||||| ||||||||| |||||||||||||| ||||||    
T  54419052 ttggaacaaacctactagcacttaccaatatatgttattaatatcaatgatatattccaaagcaaaaaattgacc 54419126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 14175758 - 14175693
Alignment:
Q  9 gcaacaacttaaccctaaaaatttagctccaaaattgcagcattaaatgctaagtgagataaccct 74  Q
    ||||||||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||    
T  14175758 gcaacaacttaaccctagaaatttggctccaaaattgcagcattaaatgctaaatgagataaccct 14175693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 9 - 101
Target Start/End: Original strand, 41828038 - 41828131
Alignment:
Q  9 gcaacaacttaa-ccctaaaaatttagctccaaaattgcagcattaaatgctaagtgagataaccctnnnnnnntttggccctaaagtgtttgg 101  Q
    |||||||||||| |||||||||||| ||||||||||| || ||||||||||||||||||||||||||       ||||||||||||||||||||    
T  41828038 gcaacaacttaaaccctaaaaatttggctccaaaattacaacattaaatgctaagtgagataaccctaaaaaaatttggccctaaagtgtttgg 41828131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 953076 - 953011
Alignment:
Q  9 gcaacaacttaaccctaaaaatttagctccaaaattgcagcattaaatgctaagtgagataaccct 74  Q
    ||||||||||||||||| ||||||||||| |||||| |||||||||||||||| ||||||||||||    
T  953076 gcaacaacttaaccctagaaatttagctcaaaaattacagcattaaatgctaaatgagataaccct 953011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 116 - 163
Target Start/End: Original strand, 50833909 - 50833956
Alignment:
Q  116 catttaccaatatatgttattaataacaatgatattttccaaagcaaa 163  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  50833909 catttaccaatatatgttattaataacaatgatattttccaaagcaaa 50833956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 116 - 163
Target Start/End: Complemental strand, 50841944 - 50841897
Alignment:
Q  116 catttaccaatatatgttattaataacaatgatattttccaaagcaaa 163  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  50841944 catttaccaatatatgttattaataacaatgatattttccaaagcaaa 50841897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 183 - 318
Target Start/End: Original strand, 42658484 - 42658621
Alignment:
Q  183 atttgaaattcaatttctccctcattcactccttat-tttgtgtatttcgaaattagcaattagcctagctattgttgtgtccctt-cctattttcatgc 280  Q
    ||||||||||||| || ||||||||||||||||||| |||||  ||||| |||||||||   ||||| | ||||||| |||   || |||||||||||||    
T  42658484 atttgaaattcaaattatccctcattcactccttatgtttgtcaatttcaaaattagcagaaagcctcggtattgttatgtaaattccctattttcatgc 42658583  T
Q  281 agcatttagtgcattctttactgaataattggacggtt 318  Q
    | |||||||||| |||||| |||| |||||| ||||||    
T  42658584 aacatttagtgccttctttgctgactaattgaacggtt 42658621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 9640274 - 9640327
Alignment:
Q  8 agcaacaacttaaccctaaaaatttagctccaaaattgcagcattaaatgctaa 61  Q
    ||||||||||||||||||||  ||| |||| |||| ||||||||| ||||||||    
T  9640274 agcaacaacttaaccctaaatttttggctctaaaaatgcagcatttaatgctaa 9640327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 48760784 - 48760837
Alignment:
Q  8 agcaacaacttaaccctaaaaatttagctccaaaattgcagcattaaatgctaa 61  Q
    ||||||||||||||||||||| ||| |||| |||| |||| |||| ||||||||    
T  48760784 agcaacaacttaaccctaaaattttggctctaaaactgcaacatttaatgctaa 48760837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 98 - 130
Target Start/End: Original strand, 41828156 - 41828188
Alignment:
Q  98 ttggaacaaacctcctagcatttaccaatatat 130  Q
    ||||||||||||| |||||||||||||||||||    
T  41828156 ttggaacaaacctactagcatttaccaatatat 41828188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 247; Significance: 1e-137; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 102 - 527
Target Start/End: Complemental strand, 9059801 - 9059391
Alignment:
Q  102 aacaaacctcctagcatttaccaatatatgttattaataacaatgatattttccaaagcaaaaatttgacccatatatgctatttgaaattcaatttctc 201  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||| ||||||||||||||    
T  9059801 aacaaacctactagcatttaccaatatatgttattaataacaatgatattttccaaagcaaaa-tttgacccagatatgctctttaaaattcaatttctc 9059703  T
Q  202 cctcattcactccttattttgtgtatttcgaaattagcaattagcctagctattgttgtgtcccttcctattttcatgcagcatttagtgcattctttac 301  Q
    ||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||    
T  9059702 cctcattcactacttattttatgtatttcgaaattagcaattagtctagctattgtcgtgtctcttcctattttcatgcaacatttagtgcattctttac 9059603  T
Q  302 tgaataattggacggttccatgatatcagacttttagaatgcattgaaattcatcagcttttaatattacggttccaactaaaaacgaattatctatctt 401  Q
    |||||||||||||||||||||||||||||| | |||||||||||| |||||| |||| ||| |||||||||| |||  ||            |||  | |    
T  9059602 tgaataattggacggttccatgatatcaga-tgttagaatgcattaaaattcctcagatttcaatattacggctcc--ct------------tcttccct 9059518  T
Q  402 cttc-ctcatcactcaccactctgtagtctctctctttctactaatcttctttcatttgcttctacattaatttctcagcaacgagcaacacaccatttt 500  Q
    | || |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||    
T  9059517 catcactcaccactcaccactctgtagtctctctctttctactgatcttctttcatttgcttctacaataatttctcagcaacgagcaactcaccatttt 9059418  T
Q  501 ctcatcggaaacctgtccctccacctt 527  Q
    ||||||| ||||||||||| |||||||    
T  9059417 ctcatcgaaaacctgtccccccacctt 9059391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 98 - 168
Target Start/End: Complemental strand, 43800347 - 43800277
Alignment:
Q  98 ttggaacaaacctcctagcatttaccaatatatgttattaataacaatgatattttccaaagcaaaaattt 168  Q
    ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  43800347 ttggaacaaacctactagcacttaccaatatatgttattaataacaatgatattttccacagcaaaaattt 43800277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 9 - 101
Target Start/End: Complemental strand, 9059922 - 9059830
Alignment:
Q  9 gcaacaacttaaccctaaaaatttagctccaaaattgcagcattaaatgctaagtgagataaccctnnnnnnntttggccctaaagtgtttgg 101  Q
    ||||||||||||||||||||||||  ||| ||||||||||||||||||||||||||||||||||||       |||||| |||||||||||||    
T  9059922 gcaacaacttaaccctaaaaatttgactctaaaattgcagcattaaatgctaagtgagataaccctacaaaaatttggctctaaagtgtttgg 9059830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 9 - 72
Target Start/End: Complemental strand, 12447220 - 12447157
Alignment:
Q  9 gcaacaacttaaccctaaaaatttagctccaaaattgcagcattaaatgctaagtgagataacc 72  Q
    ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||    
T  12447220 gcaacaacttaaccctagaaatttggctccaaaattgcagcattaaatgctaagtgagataacc 12447157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 43800464 - 43800399
Alignment:
Q  9 gcaacaacttaaccctaaaaatttagctccaaaattgcagcattaaatgctaagtgagataaccct 74  Q
    ||||||||||||||||| ||||||  |||| ||||||||| |||||||| ||| ||||||||||||    
T  43800464 gcaacaacttaaccctagaaatttgactccgaaattgcagtattaaatgttaaatgagataaccct 43800399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 61
Target Start/End: Original strand, 41750618 - 41750667
Alignment:
Q  12 acaacttaaccctaaaaatttagctccaaaattgcagcattaaatgctaa 61  Q
    ||||||||||||||||  ||| |||| |||||||||||||| ||||||||    
T  41750618 acaacttaaccctaaatttttggctctaaaattgcagcatttaatgctaa 41750667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 253 - 527
Target Start/End: Original strand, 39445259 - 39445533
Alignment:
Q  253 attgttgtgtcccttcctattttcatgcagcatttagtgcattctttactgaataattggacggttccatgatatcagacttttagaatgcattgaaatt 352  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39445259 attgttgtgtcccttcctattttcatgcaacatttagtgcattctttactgaataattggacggttccatgatatcagacttttagaatgcattgaaatt 39445358  T
Q  353 catcagcttttaatattacggttccaactaaaaacgaattatctatcttcttcctcatcactcaccactctgtagtctctctctttctactaatcttctt 452  Q
    | |||||||||||||||| ||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |||||||||    
T  39445359 cctcagcttttaatattagggttccagctaaaaacgaattatctctcttcttcctcatcgctcaccactctgtagtctctctctttctaccaatcttctt 39445458  T
Q  453 tcatttgcttctacattaatttctcagcaacgagcaacacaccattttctcatcggaaacctgtccctccacctt 527  Q
    ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  39445459 tcatttgcttctacaataatttctcagcaacgagcaactcaccattttctcatcggaaacctgtccctccacctt 39445533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 98 - 226
Target Start/End: Original strand, 39445130 - 39445258
Alignment:
Q  98 ttggaacaaacctcctagcatttaccaatatatgttattaataacaatgatattttccaaagcaaaaatttgacccatatatgctatttgaaattcaatt 197  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39445130 ttggaacaaacctactagcatttaccaatatatgttattaataacaatgatattttccaaagcaaaaatttgacccatatatgctatttgaaattcaatt 39445229  T
Q  198 tctccctcattcactccttattttgtgta 226  Q
    |||||||||||||||||||||||||||||    
T  39445230 tctccctcattcactccttattttgtgta 39445258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 9 - 103
Target Start/End: Original strand, 39445013 - 39445107
Alignment:
Q  9 gcaacaacttaaccctaaaaatttagctccaaaattgcagcattaaatgctaagtgagataaccctnnnnnnntttggccctaaagtgtttggaa 103  Q
    ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||    
T  39445013 gcaacaacttaaccctagaaatttggctccaaaattgcagcattaaatgctaagtgagataaccctaaaaaaatttggccctaaagtgtttggaa 39445107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 101 - 168
Target Start/End: Original strand, 40722747 - 40722814
Alignment:
Q  101 gaacaaacctcctagcatttaccaatatatgttattaataacaatgatattttccaaagcaaaaattt 168  Q
    |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  40722747 gaacaaacctactagcatttaccaatatatattattaataacaatgatattttccaaagcaaaaattt 40722814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 9 - 74
Target Start/End: Original strand, 48829733 - 48829798
Alignment:
Q  9 gcaacaacttaaccctaaaaatttagctccaaaattgcagcattaaatgctaagtgagataaccct 74  Q
    ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||    
T  48829733 gcaacaacttaaccctagaaatttggctccaaaattgcagcattaaatgctaagtgagataaccct 48829798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 9 - 70
Target Start/End: Original strand, 40722626 - 40722687
Alignment:
Q  9 gcaacaacttaaccctaaaaatttagctccaaaattgcagcattaaatgctaagtgagataa 70  Q
    ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||    
T  40722626 gcaacaacttaaccctagaaatttggctccaaaattgcagcattaaatgctaagtgagataa 40722687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 85336 - 85271
Alignment:
Q  9 gcaacaacttaaccctaaaaatttagctccaaaattgcagcattaaatgctaagtgagataaccct 74  Q
    ||||||||||||||||| || ||| ||||||||||||||  |||||||||||||||||||||||||    
T  85336 gcaacaacttaaccctagaattttggctccaaaattgcaatattaaatgctaagtgagataaccct 85271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 98 - 144
Target Start/End: Original strand, 48829850 - 48829896
Alignment:
Q  98 ttggaacaaacctcctagcatttaccaatatatgttattaataacaa 144  Q
    ||||||||||||| ||||||||| |||||||||||||||||||||||    
T  48829850 ttggaacaaacctactagcatttcccaatatatgttattaataacaa 48829896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 67; Significance: 2e-29; HSPs: 2)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 102 - 172
Target Start/End: Original strand, 252369 - 252439
Alignment:
Q  102 aacaaacctcctagcatttaccaatatatgttattaataacaatgatattttccaaagcaaaaatttgacc 172  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  252369 aacaaacctactagcatttaccaatatatgttattaataacaatgatattttccaaagcaaaaatttgacc 252439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 9 - 74
Target Start/End: Original strand, 252248 - 252313
Alignment:
Q  9 gcaacaacttaaccctaaaaatttagctccaaaattgcagcattaaatgctaagtgagataaccct 74  Q
    |||||||||||| | || |||||| | | |||||||||||||||||||||||||||| ||||||||    
T  252248 gcaacaacttaatcatagaaatttggtttcaaaattgcagcattaaatgctaagtgatataaccct 252313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 9e-25; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 98 - 172
Target Start/End: Original strand, 29533950 - 29534023
Alignment:
Q  98 ttggaacaaacctcctagcatttaccaatatatgttattaataacaatgatattttccaaagcaaaaatttgacc 172  Q
    ||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  29533950 ttggaacaaacctactagcacttaccaatat-tgttattaataacaatgatattttccaaagcaaaaatttgacc 29534023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 98 - 168
Target Start/End: Complemental strand, 29535560 - 29535490
Alignment:
Q  98 ttggaacaaacctcctagcatttaccaatatatgttattaataacaatgatattttccaaagcaaaaattt 168  Q
    |||||||| |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29535560 ttggaacatacctactagcacttaccaatatatgttattaataacaatgatattttccaaagcaaaaattt 29535490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 98 - 168
Target Start/End: Complemental strand, 29535790 - 29535720
Alignment:
Q  98 ttggaacaaacctcctagcatttaccaatatatgttattaataacaatgatattttccaaagcaaaaattt 168  Q
    |||||||| |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29535790 ttggaacatacctactagcacttaccaatatatgttattaataacaatgatattttccaaagcaaaaattt 29535720  T

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Target: chr6; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 98 - 172
Target Start/End: Complemental strand, 29535330 - 29535260
Alignment:
Q  98 ttggaacaaacctcctagcatttaccaatatatgttattaataacaatgatattttccaaagcaaaaatttgacc 172  Q
    ||||||||||||| |||||| ||||||     |||||||||||||||||||||||||||||||||||||||||||    
T  29535330 ttggaacaaacctactagcacttacca----ttgttattaataacaatgatattttccaaagcaaaaatttgacc 29535260  T

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Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 9 - 101
Target Start/End: Complemental strand, 29535907 - 29535815
Alignment:
Q  9 gcaacaacttaaccctaaaaatttagctccaaaattgcagcattaaatgctaagtgagataaccctnnnnnnntttggccctaaagtgtttgg 101  Q
    ||||||| ||||||||| |||||| |||||||||||| |||||| |||||||| || |||||||||       |||||| |||||||||||||    
T  29535907 gcaacaatttaaccctagaaatttggctccaaaattgtagcatttaatgctaaatgtgataaccctaaaattttttggctctaaagtgtttgg 29535815  T

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Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 9 - 52
Target Start/End: Complemental strand, 29535441 - 29535398
Alignment:
Q  9 gcaacaacttaaccctaaaaatttagctccaaaattgcagcatt 52  Q
    ||||||||||||||||| |||||| |||||||||||||||||||    
T  29535441 gcaacaacttaaccctataaatttggctccaaaattgcagcatt 29535398  T

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Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 52
Target Start/End: Complemental strand, 29535671 - 29535628
Alignment:
Q  9 gcaacaacttaaccctaaaaatttagctccaaaattgcagcatt 52  Q
    ||||||||||||||||| |||||| ||| |||||||||||||||    
T  29535671 gcaacaacttaaccctataaatttggcttcaaaattgcagcatt 29535628  T

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Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 98 - 168
Target Start/End: Original strand, 6980664 - 6980734
Alignment:
Q  98 ttggaacaaacctcctagcatttaccaatatatgttattaataacaatgatattttccaaagcaaaaattt 168  Q
    ||||| ||||||| |||||| |||||||||||||||||||||| |||||||||||||||||||||||||||    
T  6980664 ttggatcaaacctactagcacttaccaatatatgttattaatatcaatgatattttccaaagcaaaaattt 6980734  T

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Target: chr4; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 16032665 - 16032600
Alignment:
Q  9 gcaacaacttaaccctaaaaatttagctccaaaattgcagcattaaatgctaagtgagataaccct 74  Q
    ||||||||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||    
T  16032665 gcaacaacttaaccctagaaatttggctccaaaattgcagcattaaatgctaaatgagataaccct 16032600  T

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Target: chr4; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 56478959 - 56478894
Alignment:
Q  9 gcaacaacttaaccctaaaaatttagctccaaaattgcagcattaaatgctaagtgagataaccct 74  Q
    ||||||||||||||||| |||||| ||||||||||||||||| |||||||||||||||||||||||    
T  56478959 gcaacaacttaaccctagaaatttggctccaaaattgcagcactaaatgctaagtgagataaccct 56478894  T

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Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 9 - 72
Target Start/End: Original strand, 6980548 - 6980611
Alignment:
Q  9 gcaacaacttaaccctaaaaatttagctccaaaattgcagcattaaatgctaagtgagataacc 72  Q
    ||||||| |||||| ||||||||| |||||||| ||||||||||||||| ||| ||||||||||    
T  6980548 gcaacaatttaaccttaaaaatttggctccaaagttgcagcattaaatgttaaatgagataacc 6980611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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