View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2859_high_7 (Length: 258)

Name: NF2859_high_7
Description: NF2859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2859_high_7
NF2859_high_7
[»] chr7 (18 HSPs)
chr7 (1-122)||(35109702-35109823)
chr7 (2-124)||(38265235-38265357)
chr7 (1-122)||(21577098-21577219)
chr7 (17-122)||(37095210-37095315)
chr7 (17-122)||(34721861-34721966)
chr7 (1-119)||(16059356-16059474)
chr7 (17-119)||(38405157-38405259)
chr7 (1-118)||(41151183-41151301)
chr7 (1-118)||(12472132-12472249)
chr7 (3-122)||(245264-245383)
chr7 (1-117)||(11216780-11216896)
chr7 (1-119)||(18116947-18117065)
chr7 (1-122)||(45278463-45278584)
chr7 (1-119)||(48176410-48176529)
chr7 (28-122)||(28407546-28407636)
chr7 (1-122)||(23028694-23028815)
chr7 (28-118)||(24123021-24123117)
chr7 (80-122)||(39234853-39234895)
[»] chr3 (29 HSPs)
chr3 (1-122)||(8400866-8400987)
chr3 (1-122)||(50823709-50823830)
chr3 (1-122)||(50852030-50852151)
chr3 (1-122)||(7417809-7417930)
chr3 (1-122)||(35198776-35198897)
chr3 (3-122)||(22855900-22856019)
chr3 (19-123)||(22371728-22371832)
chr3 (16-119)||(34824582-34824685)
chr3 (1-119)||(55468010-55468129)
chr3 (37-122)||(37330607-37330692)
chr3 (1-122)||(52545332-52545453)
chr3 (37-129)||(30534895-30534987)
chr3 (4-119)||(43334057-43334172)
chr3 (17-122)||(29635895-29636001)
chr3 (37-122)||(37454744-37454829)
chr3 (19-122)||(19872483-19872586)
chr3 (50-122)||(25910666-25910738)
chr3 (31-118)||(42876256-42876343)
chr3 (1-86)||(48077977-48078062)
chr3 (1-116)||(50726003-50726118)
chr3 (1-116)||(50786730-50786845)
chr3 (22-122)||(25589253-25589346)
chr3 (29-119)||(30203657-30203744)
chr3 (79-122)||(773666-773709)
chr3 (72-117)||(31297529-31297574)
chr3 (47-122)||(39438829-39438903)
chr3 (75-124)||(358940-358989)
chr3 (50-118)||(14848552-14848620)
chr3 (20-68)||(38724459-38724507)
[»] chr4 (28 HSPs)
chr4 (1-119)||(51066504-51066622)
chr4 (1-119)||(46494401-46494519)
chr4 (1-122)||(36192552-36192673)
chr4 (1-122)||(51713965-51714086)
chr4 (17-122)||(7173585-7173690)
chr4 (1-122)||(30970384-30970505)
chr4 (19-122)||(29576444-29576547)
chr4 (18-122)||(55231715-55231819)
chr4 (17-118)||(32139191-32139292)
chr4 (17-122)||(39863778-39863883)
chr4 (2-122)||(50905760-50905880)
chr4 (46-122)||(22304091-22304167)
chr4 (1-92)||(8740459-8740550)
chr4 (28-122)||(676766-676860)
chr4 (5-122)||(2570216-2570333)
chr4 (17-119)||(41523424-41523526)
chr4 (8-122)||(47626993-47627107)
chr4 (28-120)||(51279035-51279127)
chr4 (17-119)||(2294719-2294815)
chr4 (27-122)||(4080552-4080647)
chr4 (1-124)||(50399640-50399763)
chr4 (57-119)||(23084468-23084530)
chr4 (16-93)||(22423402-22423479)
chr4 (54-118)||(37990599-37990663)
chr4 (76-119)||(51066240-51066283)
chr4 (27-118)||(40012550-40012640)
chr4 (69-114)||(28202598-28202643)
chr4 (35-116)||(28202701-28202782)
[»] chr2 (24 HSPs)
chr2 (1-122)||(17136398-17136519)
chr2 (1-122)||(45136970-45137091)
chr2 (5-122)||(44650408-44650525)
chr2 (1-122)||(40156051-40156172)
chr2 (19-122)||(36836329-36836432)
chr2 (20-122)||(2754051-2754153)
chr2 (1-122)||(25987661-25987783)
chr2 (17-122)||(36380132-36380237)
chr2 (17-122)||(10745232-10745337)
chr2 (17-122)||(21637924-21638029)
chr2 (17-113)||(6672802-6672898)
chr2 (17-122)||(558439-558544)
chr2 (1-122)||(5039431-5039552)
chr2 (17-122)||(26690181-26690286)
chr2 (1-122)||(33066601-33066722)
chr2 (2-120)||(30372682-30372800)
chr2 (1-122)||(2357076-2357196)
chr2 (17-122)||(3200908-3201013)
chr2 (27-123)||(13047155-13047248)
chr2 (27-122)||(21487185-21487281)
chr2 (17-122)||(7860146-7860251)
chr2 (73-122)||(2098826-2098875)
chr2 (32-119)||(4553561-4553648)
chr2 (28-68)||(30477240-30477280)
[»] chr6 (9 HSPs)
chr6 (2-122)||(35163750-35163870)
chr6 (17-122)||(20685352-20685457)
chr6 (2-122)||(19686827-19686947)
chr6 (17-122)||(17948707-17948812)
chr6 (16-119)||(15070151-15070254)
chr6 (5-122)||(2711740-2711851)
chr6 (17-122)||(14505525-14505628)
chr6 (17-93)||(24336642-24336718)
chr6 (1-44)||(14496363-14496406)
[»] chr1 (19 HSPs)
chr1 (1-121)||(30370061-30370181)
chr1 (1-119)||(30054445-30054563)
chr1 (2-122)||(12025193-12025313)
chr1 (17-124)||(22024130-22024237)
chr1 (19-122)||(14498079-14498182)
chr1 (17-122)||(45324033-45324138)
chr1 (1-121)||(30850841-30850961)
chr1 (1-119)||(21090126-21090244)
chr1 (17-122)||(20014485-20014590)
chr1 (1-122)||(4573390-4573511)
chr1 (34-113)||(35371754-35371833)
chr1 (17-122)||(33762540-33762645)
chr1 (3-122)||(33763254-33763373)
chr1 (147-229)||(43566634-43566716)
chr1 (2-119)||(44438553-44438670)
chr1 (49-119)||(35618034-35618104)
chr1 (62-124)||(17015192-17015254)
chr1 (48-118)||(17291828-17291897)
chr1 (219-248)||(43566717-43566746)
[»] chr8 (21 HSPs)
chr8 (1-122)||(19723322-19723443)
chr8 (17-119)||(17095577-17095679)
chr8 (17-122)||(11404028-11404133)
chr8 (17-122)||(32296639-32296744)
chr8 (20-122)||(22711539-22711641)
chr8 (1-122)||(4840151-4840272)
chr8 (27-122)||(36261683-36261778)
chr8 (17-122)||(29767215-29767318)
chr8 (2-119)||(28739564-28739681)
chr8 (19-102)||(21355004-21355087)
chr8 (36-119)||(11909426-11909509)
chr8 (27-118)||(43288109-43288200)
chr8 (35-122)||(41553330-41553417)
chr8 (4-122)||(30682853-30682970)
chr8 (5-89)||(24475029-24475113)
chr8 (17-122)||(11610307-11610412)
chr8 (62-122)||(27879560-27879620)
chr8 (62-122)||(28019741-28019801)
chr8 (1-66)||(27881044-27881109)
chr8 (1-66)||(28021225-28021290)
chr8 (75-118)||(44741924-44741967)
[»] chr5 (11 HSPs)
chr5 (1-122)||(17064334-17064455)
chr5 (1-119)||(20983006-20983124)
chr5 (31-122)||(41910865-41910956)
chr5 (38-122)||(37976598-37976682)
chr5 (27-117)||(31673867-31673956)
chr5 (188-245)||(33001304-33001361)
chr5 (186-248)||(33014624-33014685)
chr5 (7-122)||(5009417-5009531)
chr5 (27-118)||(39162859-39162947)
chr5 (79-122)||(35237059-35237102)
chr5 (66-121)||(38255559-38255614)
[»] scaffold0021 (1 HSPs)
scaffold0021 (4-122)||(107692-107809)
[»] scaffold0691 (1 HSPs)
scaffold0691 (17-97)||(6994-7074)


Alignment Details
Target: chr7 (Bit Score: 110; Significance: 2e-55; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 35109702 - 35109823
Alignment:
Q  1 cgggttcgagctccattagtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggca 100  Q
    ||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35109702 cgggttcgagccccactagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggca 35109801  T
Q  101 ccatcccctcaccctaaaattt 122  Q
    ||||||||||||||||||||||    
T  35109802 ccatcccctcaccctaaaattt 35109823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 2 - 124
Target Start/End: Complemental strand, 38265357 - 38265235
Alignment:
Q  2 gggttcgagctccattagtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcac 101  Q
    |||||||||| ||  ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38265357 gggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcac 38265258  T
Q  102 catcccctcaccctaaaatttat 124  Q
    |||||||||||||||||||||||    
T  38265257 catcccctcaccctaaaatttat 38265235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 21577219 - 21577098
Alignment:
Q  1 cgggttcgagctccattagtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggca 100  Q
    ||||||||||| ||| || |||||| |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  21577219 cgggttcgagccccactaatgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagtccgaaggtcttccctgccttggactggggca 21577120  T
Q  101 ccatcccctcaccctaaaattt 122  Q
    ||||||||||||||||||||||    
T  21577119 ccatcccctcaccctaaaattt 21577098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 17 - 122
Target Start/End: Complemental strand, 37095315 - 37095210
Alignment:
Q  17 tagtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcacccta 116  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37095315 tagtgtctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcacccta 37095216  T
Q  117 aaattt 122  Q
    ||||||    
T  37095215 aaattt 37095210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 17 - 122
Target Start/End: Original strand, 34721861 - 34721966
Alignment:
Q  17 tagtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcacccta 116  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||    
T  34721861 tagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggacttccctgccttggactcgggcaccatcccctcacccta 34721960  T
Q  117 aaattt 122  Q
    ||||||    
T  34721961 aaattt 34721966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 16059474 - 16059356
Alignment:
Q  1 cgggttcgagctccattagtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggca 100  Q
    ||||||||||| ||  ||||||||| | ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||    
T  16059474 cgggttcgagccccgctagtgcctttgcagggaggtaaatgtaattacctttgtaagtgctctctgagcccgaaggtcttccctaccttggactggggca 16059375  T
Q  101 ccatcccctcaccctaaaa 119  Q
    |||||||||||||||||||    
T  16059374 ccatcccctcaccctaaaa 16059356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 17 - 119
Target Start/End: Complemental strand, 38405259 - 38405157
Alignment:
Q  17 tagtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcacccta 116  Q
    ||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  38405259 tagtgcctttggagggaggtaaatgtaattatctttgtaagtgctctttgaacccgaaggtcttccctgccttggactggggcaccatcccctcacccta 38405160  T
Q  117 aaa 119  Q
    |||    
T  38405159 aaa 38405157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 41151183 - 41151301
Alignment:
Q  1 cgggttcgagctccattagtgccttcggagggaggtaaatgtaattaccttt-gtaagtgctctttgagcccgaaggtcttccctgccttggactggggc 99  Q
    ||||||||||| ||  ||||| ||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  41151183 cgggttcgagccccgctagtgtctttggagggaggtaaatgtaattaccttttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggc 41151282  T
Q  100 accatcccctcaccctaaa 118  Q
    |||||||||||||||||||    
T  41151283 accatcccctcaccctaaa 41151301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 12472132 - 12472249
Alignment:
Q  1 cgggttcgagctccattagtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggca 100  Q
    ||||||||||| ||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |    
T  12472132 cgggttcgagccccactagtgcctttggagggaggtaaatataattacctttgtaagtgctctttgagcacgaaggtcttccctgtcttggactggggta 12472231  T
Q  101 ccatcccctcaccctaaa 118  Q
    ||||||||||||||||||    
T  12472232 ccatcccctcaccctaaa 12472249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 3 - 122
Target Start/End: Complemental strand, 245383 - 245264
Alignment:
Q  3 ggttcgagctccattagtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcacc 102  Q
    ||||||||| ||  ||||||| | ||||||||||||||||||||| ||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  245383 ggttcgagccccgctagtgcccttggagggaggtaaatgtaattatctttgtaaacgctctttgagcccgaaggtcttccctgccttggactggggcacc 245284  T
Q  103 atcccctcaccctaaaattt 122  Q
    ||||||||||||||||||||    
T  245283 atcccctcaccctaaaattt 245264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 11216780 - 11216896
Alignment:
Q  1 cgggttcgagctccattagtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggca 100  Q
    ||||||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| || | ||||||| |||||    
T  11216780 cgggttcgagccccattagtgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttctctactttggactagggca 11216879  T
Q  101 ccatcccctcaccctaa 117  Q
     ||| ||||||||||||    
T  11216880 tcattccctcaccctaa 11216896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 18117065 - 18116947
Alignment:
Q  1 cgggttcgagctccattagtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggca 100  Q
    |||||||||||  |  |||||||||  |||||||||||||||||||||||||||| ||||||||||||  ||||| ||||||||||||||||||||||||    
T  18117065 cgggttcgagccacgctagtgcctttagagggaggtaaatgtaattacctttgtaggtgctctttgaggtcgaagatcttccctgccttggactggggca 18116966  T
Q  101 ccatcccctcaccctaaaa 119  Q
    |||||||||||||||||||    
T  18116965 ccatcccctcaccctaaaa 18116947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 45278463 - 45278584
Alignment:
Q  1 cgggttcgagctccattagtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggca 100  Q
    ||||||||||| ||  ||||||||| | ||||| ||||||||||||| ||||||||||||||||| | |||||| ||||||||||||||||||||| |||    
T  45278463 cgggttcgagccccgctagtgcctttgaagggaagtaaatgtaattatctttgtaagtgctctttaaacccgaatgtcttccctgccttggactggagca 45278562  T
Q  101 ccatcccctcaccctaaaattt 122  Q
    ||||||||||||||||||||||    
T  45278563 ccatcccctcaccctaaaattt 45278584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 48176410 - 48176529
Alignment:
Q  1 cgggttcgagctccattagtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccct-gccttggactggggc 99  Q
    ||||||||||| ||  ||||||||| ||| |||||||||||||| ||| |||||||||| | |||||||| |||||| ||||||  ||||||||||||||    
T  48176410 cgggttcgagccccgctagtgcctttggaaggaggtaaatgtaaatacttttgtaagtgttttttgagccggaaggttttccctccccttggactggggc 48176509  T
Q  100 accatcccctcaccctaaaa 119  Q
    ||||||||||||||||||||    
T  48176510 accatcccctcaccctaaaa 48176529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 28 - 122
Target Start/End: Original strand, 28407546 - 28407636
Alignment:
Q  28 gagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaattt 122  Q
    ||||||||||||||||| ||| ||||||||||||||||||||||||||||    |  |||||||| |||||||||||||||||||||||||||||    
T  28407546 gagggaggtaaatgtaaatacttttgtaagtgctctttgagcccgaaggt----caagccttggattggggcaccatcccctcaccctaaaattt 28407636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 23028694 - 23028815
Alignment:
Q  1 cgggttcgagctccattagtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggca 100  Q
    ||||||||| ||||  || ||||||  |||||| |||||||||||||||||| |||||| | ||||| |||||||| ||||||| |||| ||||| | ||    
T  23028694 cgggttcgaactcctctaatgcctttagagggatgtaaatgtaattacctttataagtgttttttgaacccgaaggccttccctaccttagactgagaca 23028793  T
Q  101 ccatcccctcaccctaaaattt 122  Q
    |||||| |||| ||||||||||    
T  23028794 ccatcctctcatcctaaaattt 23028815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 118
Target Start/End: Original strand, 24123021 - 24123117
Alignment:
Q  28 gagggaggtaaatgtaattacctttgtaagtgctctttgagcc------cgaaggtcttccctgccttggactggggcaccatcccctcaccctaaa 118  Q
    |||| ||||||||||||||||||||||||||  |||||||  |      ||||||||||| |||||||||| |||| |||||||| |||||||||||    
T  24123021 gaggaaggtaaatgtaattacctttgtaagtattctttgaatctgaattcgaaggtcttctctgccttggattgggtcaccatcctctcaccctaaa 24123117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 80 - 122
Target Start/End: Original strand, 39234853 - 39234895
Alignment:
Q  80 tccctgccttggactggggcaccatcccctcaccctaaaattt 122  Q
    |||||||| |||||||||||||||||||||||||| |||||||    
T  39234853 tccctgccatggactggggcaccatcccctcacccaaaaattt 39234895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 106; Significance: 4e-53; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 8400866 - 8400987
Alignment:
Q  1 cgggttcgagctccattagtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggca 100  Q
    ||||||||||| ||  ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8400866 cgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggca 8400965  T
Q  101 ccatcccctcaccctaaaattt 122  Q
    ||||||||||||||||||||||    
T  8400966 ccatcccctcaccctaaaattt 8400987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 50823709 - 50823830
Alignment:
Q  1 cgggttcgagctccattagtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggca 100  Q
    ||||||||||  || |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50823709 cgggttcgagtcccgttagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggca 50823808  T
Q  101 ccatcccctcaccctaaaattt 122  Q
    ||||||||||||||||||||||    
T  50823809 ccatcccctcaccctaaaattt 50823830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 50852151 - 50852030
Alignment:
Q  1 cgggttcgagctccattagtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggca 100  Q
    ||||||||||  || |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50852151 cgggttcgagtcccgttagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggca 50852052  T
Q  101 ccatcccctcaccctaaaattt 122  Q
    ||||||||||||||||||||||    
T  50852051 ccatcccctcaccctaaaattt 50852030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 7417809 - 7417930
Alignment:
Q  1 cgggttcgagctccattagtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggca 100  Q
    ||||||||||| ||  ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  7417809 cgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttcactgccttggactggggca 7417908  T
Q  101 ccatcccctcaccctaaaattt 122  Q
    ||||||||||||||||||||||    
T  7417909 ccatcccctcaccctaaaattt 7417930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 35198776 - 35198897
Alignment:
Q  1 cgggttcgagctccattagtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggca 100  Q
    ||||||||||| ||| || |||||| | |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  35198776 cgggttcgagccccactaatgcctttgcagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggagca 35198875  T
Q  101 ccatcccctcaccctaaaattt 122  Q
    ||||||||||||||||||||||    
T  35198876 ccatcccctcaccctaaaattt 35198897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 3 - 122
Target Start/End: Original strand, 22855900 - 22856019
Alignment:
Q  3 ggttcgagctccattagtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcacc 102  Q
    ||||||||| ||  ||||| ||| ||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||    
T  22855900 ggttcgagccccgctagtgtctttggagggaggtaaatgtaattacctttgtaagtgctctttaagcccaaaggtcttccctgccttggactggagcacc 22855999  T
Q  103 atcccctcaccctaaaattt 122  Q
    ||||||||||||||||||||    
T  22856000 atcccctcaccctaaaattt 22856019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 19 - 123
Target Start/End: Complemental strand, 22371832 - 22371728
Alignment:
Q  19 gtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaa 118  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| || ||||||||||||||||||||||||||||    
T  22371832 gtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgaacccgaagatcttccctgctttagactggggcaccatcccctcaccctaaa 22371733  T
Q  119 attta 123  Q
    |||||    
T  22371732 attta 22371728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 16 - 119
Target Start/End: Original strand, 34824582 - 34824685
Alignment:
Q  16 ttagtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccct 115  Q
    |||||||||| | ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||    
T  34824582 ttagtgcctttgaagggaggtaaatgtaattatctttgtaagtgctctttgatcccgaaggtcttcccggccttggactggggcaccatcccctcaccct 34824681  T
Q  116 aaaa 119  Q
    ||||    
T  34824682 aaaa 34824685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 55468010 - 55468129
Alignment:
Q  1 cgggttcgagctccattagtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgag-cccgaaggtcttccctgccttggactggggc 99  Q
    ||||||||||| ||| || ||| || |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |||||||||||||||||    
T  55468010 cgggttcgagccccactaatgcgtttggagggaggtaaatgtaaatacctttgtaagtgctctttgagccccgaaggtcttctctgccttggactggggc 55468109  T
Q  100 accatcccctcaccctaaaa 119  Q
    ||||||||||||||||||||    
T  55468110 accatcccctcaccctaaaa 55468129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 37 - 122
Target Start/End: Complemental strand, 37330692 - 37330607
Alignment:
Q  37 aaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaattt 122  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37330692 aaatgtaattacctttgtaagtgctctttgagtccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaattt 37330607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 52545332 - 52545453
Alignment:
Q  1 cgggttcgagctccattagtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggca 100  Q
    ||||||||||| ||  |||||||||   |||||||||||||||| ||| |||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  52545332 cgggttcgagccccgctagtgcctttaaagggaggtaaatgtaaatacttttgtaagtagtctttgagcccgaaggtcttccctgccttggactggggca 52545431  T
Q  101 ccatcccctcaccctaaaattt 122  Q
    ||||||||||||||||||||||    
T  52545432 ccatcccctcaccctaaaattt 52545453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 37 - 129
Target Start/End: Complemental strand, 30534987 - 30534895
Alignment:
Q  37 aaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaatttatttcat 129  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| ||||||    
T  30534987 aaatgtaattacctttgtaagtgctctttgagcccgaagatcttccctgccttggactggggtaccatcccctcaccctaaaatttctttcat 30534895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 4 - 119
Target Start/End: Complemental strand, 43334172 - 43334057
Alignment:
Q  4 gttcgagctccattagtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcacca 103  Q
    |||||||| ||  ||||| ||| |||||||||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||||||||| ||||    
T  43334172 gttcgagccccgctagtgtcttgggagggaggtaaatgtaaatacttttgtaagtgctatttgagcccgaaggtcttccctgccttggactggggtacca 43334073  T
Q  104 tcccctcaccctaaaa 119  Q
    ||||||||||||||||    
T  43334072 tcccctcaccctaaaa 43334057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 17 - 122
Target Start/End: Original strand, 29635895 - 29636001
Alignment:
Q  17 tagtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcacc-atcccctcaccct 115  Q
    ||||||||| | ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||| || ||||||| ||    
T  29635895 tagtgcctttgaagggaggtaaatgtaattacctttgtaagtgctctttaagcccgaatgtcttccctgccttggagtggggcaccaattccctcacgct 29635994  T
Q  116 aaaattt 122  Q
    |||||||    
T  29635995 aaaattt 29636001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 37 - 122
Target Start/End: Complemental strand, 37454829 - 37454744
Alignment:
Q  37 aaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaattt 122  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||||    
T  37454829 aaatataattacctttgtaagtgctctttgagcccgaaggtcttccctaccttagattggggcaccatcccctcaccctaaaattt 37454744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 19 - 122
Target Start/End: Complemental strand, 19872586 - 19872483
Alignment:
Q  19 gtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaa 118  Q
    ||||||| ||||| |||||||  ||||||||||||||||| ||||||||  |||||||||||||||| ||||||||||||||||||||||||| ||||||    
T  19872586 gtgcctttggaggaaggtaaaattaattacctttgtaagtactctttgaatccgaaggtcttccctgtcttggactggggcaccatcccctcatcctaaa 19872487  T
Q  119 attt 122  Q
    ||||    
T  19872486 attt 19872483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 50 - 122
Target Start/End: Complemental strand, 25910738 - 25910666
Alignment:
Q  50 tttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaattt 122  Q
    ||||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||||||||||||||||||    
T  25910738 tttgtaagtgctctttgagtccgaagatcttccctgccttggactgaggcaccatcccctcaccctaaaattt 25910666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 31 - 118
Target Start/End: Original strand, 42876256 - 42876343
Alignment:
Q  31 ggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaa 118  Q
    ||||||||||||||||||||||||||||||||||||| |  ||| |||||||||  |||||||| ||||||||||| |||||||||||    
T  42876256 ggaggtaaatgtaattacctttgtaagtgctctttgaacttgaatgtcttccctatcttggactagggcaccatcctctcaccctaaa 42876343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 48078062 - 48077977
Alignment:
Q  1 cgggttcgagctccattagtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgc 86  Q
    |||||||||||  || ||||||||| ||||| |||||||||||| || |||||||||||||||||||||| |||||||||||||||    
T  48078062 cgggttcgagcctcactagtgcctttggaggaaggtaaatgtaaatatctttgtaagtgctctttgagcctgaaggtcttccctgc 48077977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 50726118 - 50726003
Alignment:
Q  1 cgggttcgagctccattagtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggca 100  Q
    ||||||||||| || |||||| ||| ||||| |||||||| ||||||| ||||||||| || ||||||  |||| ||||||||| | ||||| |||||||    
T  50726118 cgggttcgagccccgttagtgtctttggaggaaggtaaatataattacttttgtaagttctttttgagttcgaaagtcttccctactttggattggggca 50726019  T
Q  101 ccatcccctcacccta 116  Q
    ||||||| ||||||||    
T  50726018 ccatcccttcacccta 50726003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 50786730 - 50786845
Alignment:
Q  1 cgggttcgagctccattagtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggca 100  Q
    ||||||||||| || |||||| ||| ||||| |||||||| ||||||| ||||||||| || ||||||  |||| ||||||||| | ||||| |||||||    
T  50786730 cgggttcgagccccgttagtgtctttggaggaaggtaaatataattacttttgtaagttctttttgagttcgaaagtcttccctactttggattggggca 50786829  T
Q  101 ccatcccctcacccta 116  Q
    ||||||| ||||||||    
T  50786830 ccatcccttcacccta 50786845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 22 - 122
Target Start/End: Original strand, 25589253 - 25589346
Alignment:
Q  22 ccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaatt 121  Q
    |||| ||| |||||||||||||| |||||| |||||||||||||||| ||||       ||||||||||||| |||||||| ||||||||||||||||||    
T  25589253 cctttggaaggaggtaaatgtaaataccttagtaagtgctctttgagtccga-------ccctgccttggacgggggcaccctcccctcaccctaaaatt 25589345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 29 - 119
Target Start/End: Complemental strand, 30203744 - 30203657
Alignment:
Q  29 agggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaa 119  Q
    ||||||||||||||||  |||||||||| || ||||||||| ||||||| |||| || |||| ||||||||||||||||||||| ||||||    
T  30203744 agggaggtaaatgtaa--acctttgtaaatgttctttgagctcgaaggttttcc-tgtcttgaactggggcaccatcccctcactctaaaa 30203657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 79 - 122
Target Start/End: Original strand, 773666 - 773709
Alignment:
Q  79 ttccctgccttggactggggcaccatcccctcaccctaaaattt 122  Q
    |||||| ||||||||||||||||||||||||||||||| |||||    
T  773666 ttcccttccttggactggggcaccatcccctcaccctagaattt 773709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 72 - 117
Target Start/End: Complemental strand, 31297574 - 31297529
Alignment:
Q  72 gaaggtcttccctgccttggactggggcaccatcccctcaccctaa 117  Q
    ||||||||||| ||||||||||||||| ||||| ||||||||||||    
T  31297574 gaaggtcttccttgccttggactggggaaccatgccctcaccctaa 31297529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 47 - 122
Target Start/End: Complemental strand, 39438903 - 39438829
Alignment:
Q  47 acctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaattt 122  Q
    ||||||||||||| ||||| |  || || ||||| ||| ||||| ||||||||||||| |||||||||||||||||    
T  39438903 acctttgtaagtgttctttaaatccaaaagtctttcctaccttgaactggggcaccat-ccctcaccctaaaattt 39438829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 75 - 124
Target Start/End: Complemental strand, 358989 - 358940
Alignment:
Q  75 ggtcttccctgccttggactggggcaccatcccctcaccctaaaatttat 124  Q
    ||||||| ||| ||| ||||  ||||||||||||||||||||||||||||    
T  358989 ggtcttctctgtcttagactatggcaccatcccctcaccctaaaatttat 358940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 50 - 118
Target Start/End: Original strand, 14848552 - 14848620
Alignment:
Q  50 tttgtaagtgctctttgagcccgaaggtcttccctgccttggact-ggggcaccatcccctcaccctaaa 118  Q
    ||||| ||||| ||||||||| |||||| || ||||||||||||| ||||||||| ||||| ||||||||    
T  14848552 tttgtgagtgccctttgagcctgaaggtttttcctgccttggactaggggcacca-ccccttaccctaaa 14848620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 38724507 - 38724459
Alignment:
Q  20 tgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgag 68  Q
    ||||| |||||||||||||| |||| | |||||||||||||| ||||||    
T  38724507 tgcctccggagggaggtaaacgtaaatccctttgtaagtgctatttgag 38724459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 103; Significance: 2e-51; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 51066504 - 51066622
Alignment:
Q  1 cgggttcgagctccattagtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggca 100  Q
    ||||||||||||||  ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51066504 cgggttcgagctccgctagtgcctttggagggaggtaaatataattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggca 51066603  T
Q  101 ccatcccctcaccctaaaa 119  Q
    |||||||||||||||||||    
T  51066604 ccatcccctcaccctaaaa 51066622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 46494519 - 46494401
Alignment:
Q  1 cgggttcgagctccattagtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggca 100  Q
    ||||||||||| ||| ||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  46494519 cgggttcgagccccactagtgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctaccttggactggggca 46494420  T
Q  101 ccatcccctcaccctaaaa 119  Q
    |||||||||||||||||||    
T  46494419 ccatcccctcaccctaaaa 46494401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 36192552 - 36192673
Alignment:
Q  1 cgggttcgagctccattagtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggca 100  Q
    ||||||||||| ||| ||||||||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||    
T  36192552 cgggttcgagccccactagtgcctttggagggaggtaaatgtaattacttttgtaaatgctctttgagcccgaaggtcttccctaccttggactggggca 36192651  T
Q  101 ccatcccctcaccctaaaattt 122  Q
    ||||||||||||||||||||||    
T  36192652 ccatcccctcaccctaaaattt 36192673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 51714086 - 51713965
Alignment:
Q  1 cgggttcgagctccattagtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggca 100  Q
    ||||||||||| ||| ||||||||| | |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||    
T  51714086 cgggttcgagccccactagtgcctttgaagggaggtaaatataaatacctttgtaagtgctctttgagcccgaaggtcttccctgctttgaactggggca 51713987  T
Q  101 ccatcccctcaccctaaaattt 122  Q
    ||||||||||||||||||||||    
T  51713986 ccatcccctcaccctaaaattt 51713965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 17 - 122
Target Start/End: Complemental strand, 7173690 - 7173585
Alignment:
Q  17 tagtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcacccta 116  Q
    ||||||||| ||| |||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  7173690 tagtgcctttggaaggaggtaaatgtcaatacctttgtaagtgctctttgagcccgaaggtcttccctgcgttggactggggcaccatcccctcacccta 7173591  T
Q  117 aaattt 122  Q
    ||||||    
T  7173590 aaattt 7173585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 30970505 - 30970384
Alignment:
Q  1 cgggttcgagctccattagtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggca 100  Q
    |||||||||||  || ||||||||| | |||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |||| ||||||||||    
T  30970505 cgggttcgagcctcactagtgcctttgaagggaggtaaatgtaaatacctttgtaagtgctctttgagctcgaaggtcttccctaccttagactggggca 30970406  T
Q  101 ccatcccctcaccctaaaattt 122  Q
    ||||||||||||||||||||||    
T  30970405 ccatcccctcaccctaaaattt 30970384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 19 - 122
Target Start/End: Original strand, 29576444 - 29576547
Alignment:
Q  19 gtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaa 118  Q
    ||||||| |||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  29576444 gtgcctttggagggaggtaaatgtaaataactttgtaagtgctctttgagcccgaaggtcttccctgccttggattggggcaccaccccctcaccctaaa 29576543  T
Q  119 attt 122  Q
    ||||    
T  29576544 attt 29576547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 18 - 122
Target Start/End: Original strand, 55231715 - 55231819
Alignment:
Q  18 agtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaa 117  Q
    |||||||| | |||||||||||||||| ||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||    
T  55231715 agtgcctttgaagggaggtaaatgtaaatacttttgtaagtgctctttgagcctgaatgtcttccctgccttggactggggcaccatcccctcaccctaa 55231814  T
Q  118 aattt 122  Q
    |||||    
T  55231815 aattt 55231819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 17 - 118
Target Start/End: Original strand, 32139191 - 32139292
Alignment:
Q  17 tagtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcacccta 116  Q
    ||||| ||| ||||||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||||||||||||||||| ||||||||    
T  32139191 tagtgtctttggagggaggtaaatgtaattacctttgtaagtgttctttgagcctgaaggtcttctctgccttggactggggcaccatcccttcacccta 32139290  T
Q  117 aa 118  Q
    ||    
T  32139291 aa 32139292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 17 - 122
Target Start/End: Complemental strand, 39863883 - 39863778
Alignment:
Q  17 tagtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcacccta 116  Q
    ||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||||| | ||| ||||||||||||||    
T  39863883 tagtgcctttggagggaagtaaatgtaattacctttgtaagtgctctttgaacccgaaggtcttctctaccttggactgagacactatcccctcacccta 39863784  T
Q  117 aaattt 122  Q
    ||||||    
T  39863783 aaattt 39863778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 2 - 122
Target Start/End: Original strand, 50905760 - 50905880
Alignment:
Q  2 gggttcgagctccattagtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcac 101  Q
    |||||||||| ||  ||||||||| |||| |||||||||||||||| ||||||| |||||||||||| ||||||||||||| ||||||| ||||||||||    
T  50905760 gggttcgagccccgctagtgcctttggagagaggtaaatgtaattatctttgtaggtgctctttgagtccgaaggtcttccatgccttgaactggggcac 50905859  T
Q  102 catcccctcaccctaaaattt 122  Q
    |||||  ||||||||||||||    
T  50905860 catcctttcaccctaaaattt 50905880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 46 - 122
Target Start/End: Complemental strand, 22304167 - 22304091
Alignment:
Q  46 tacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaattt 122  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  22304167 tacctttgtaagtgctctttgagcccgaaggtcttccctaccttggactggggcaccatcctctcaccctaaaattt 22304091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 8740459 - 8740550
Alignment:
Q  1 cgggttcgagctccattagtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttgga 92  Q
    ||||||||||| ||  ||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||    
T  8740459 cgggttcgagccccgctagtgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccatgccttgga 8740550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 28 - 122
Target Start/End: Original strand, 676766 - 676860
Alignment:
Q  28 gagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaattt 122  Q
    ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||| ||| ||||||||    
T  676766 gagggaggtaagtgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactgtaacaccatccccttaccttaaaattt 676860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 5 - 122
Target Start/End: Original strand, 2570216 - 2570333
Alignment:
Q  5 ttcgagctccattagtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccat 104  Q
    ||||||||||  | ||||||| |||||||||||||| ||| || | || ||| || |||||||| |||||| ||||||||||||||||||||||||||||    
T  2570216 ttcgagctccgctggtgcctttggagggaggtaaatataaatatcattataaatgttctttgagtccgaagatcttccctgccttggactggggcaccat 2570315  T
Q  105 cccctcaccctaaaattt 122  Q
    ||||||||||||||||||    
T  2570316 cccctcaccctaaaattt 2570333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 17 - 119
Target Start/End: Original strand, 41523424 - 41523526
Alignment:
Q  17 tagtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcacccta 116  Q
    ||||| ||| |||||||||||||||||| ||||||| |||||||||||||||| ||||||||||||||  |||||| |||| ||||||||| ||| ||||    
T  41523424 tagtgtctttggagggaggtaaatgtaaatacctttataagtgctctttgagctcgaaggtcttccctatcttggattgggacaccatcccttcatccta 41523523  T
Q  117 aaa 119  Q
    |||    
T  41523524 aaa 41523526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 8 - 122
Target Start/End: Complemental strand, 47627107 - 47626993
Alignment:
Q  8 gagctccattagtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatccc 107  Q
    |||| ||| ||||||||| | |||||||||||||||| ||||| | ||| | |||||||| | ||||||||||||||||||||||||||  ||||||| |    
T  47627107 gagccccactagtgcctttgaagggaggtaaatgtaaatacctctataaatactctttgaactcgaaggtcttccctgccttggactggaacaccatctc 47627008  T
Q  108 ctcaccctaaaattt 122  Q
    |||||||||||||||    
T  47627007 ctcaccctaaaattt 47626993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 28 - 120
Target Start/End: Complemental strand, 51279127 - 51279035
Alignment:
Q  28 gagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaat 120  Q
    ||||||||| ||||||| ||| |||||||||||||||||||||| |||||||||||  ||||||| |  ||||||||||||||||||||||||    
T  51279127 gagggaggtcaatgtaaatacttttgtaagtgctctttgagcccaaaggtcttcccaaccttggattaaggcaccatcccctcaccctaaaat 51279035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 17 - 119
Target Start/End: Complemental strand, 2294815 - 2294719
Alignment:
Q  17 tagtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcacccta 116  Q
    ||||||||| ||||| ||||||||||||||||      ||||| || ||||||||||| |||||| ||||||| ||||||||||||||||||||||||||    
T  2294815 tagtgcctttggaggaaggtaaatgtaattac------aagtgttcgttgagcccgaaagtcttcactgccttagactggggcaccatcccctcacccta 2294722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 27 - 122
Target Start/End: Complemental strand, 4080647 - 4080552
Alignment:
Q  27 ggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaattt 122  Q
    |||||||||||||||||||||| ||||||| ||||||||||| | ||| |||||| ||| |||||| ||| ||||||||||||| || ||||||||    
T  4080647 ggagggaggtaaatgtaattacatttgtaaatgctctttgagtctgaatgtcttctctgtcttggattggagcaccatcccctcgccttaaaattt 4080552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 50399763 - 50399640
Alignment:
Q  1 cgggttcgagctccattagtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggca 100  Q
    ||||||||||| ||  ||||||  | ||||| |||||||||||| |||||||||||||| ||||||||||  || |||||| || |||||||   |||||    
T  50399763 cgggttcgagccccgctagtgctcttggaggaaggtaaatgtaaatacctttgtaagtgttctttgagcctaaatgtcttctctaccttggataagggca 50399664  T
Q  101 ccatcccctcaccctaaaatttat 124  Q
     ||||| ||||||||||| |||||    
T  50399663 tcatccgctcaccctaaattttat 50399640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 57 - 119
Target Start/End: Complemental strand, 23084530 - 23084468
Alignment:
Q  57 gtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaa 119  Q
    |||||||||||| ||||||||||||||| ||||| ||||||| |||||| |||||||||||||    
T  23084530 gtgctctttgagtccgaaggtcttccctaccttgaactggggtaccatctcctcaccctaaaa 23084468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 16 - 93
Target Start/End: Original strand, 22423402 - 22423479
Alignment:
Q  16 ttagtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggac 93  Q
    ||||| |||| |||||||||||||||||| ||| |||||||||| |||||| |  |||||||||||||||| ||||||    
T  22423402 ttagtacctttggagggaggtaaatgtaaatacttttgtaagtgttctttgtgttcgaaggtcttccctgctttggac 22423479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 54 - 118
Target Start/End: Complemental strand, 37990663 - 37990599
Alignment:
Q  54 taagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaa 118  Q
    ||||| ||||||||||| |||| |||||||| ||||||||||||||||||| |||||| ||||||    
T  37990663 taagtactctttgagcctgaagatcttccctaccttggactggggcaccattccctcatcctaaa 37990599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 76 - 119
Target Start/End: Original strand, 51066240 - 51066283
Alignment:
Q  76 gtcttccctgccttggactggggcaccatcccctcaccctaaaa 119  Q
    ||||||||||||||| ||||||||||||||||||||||||||||    
T  51066240 gtcttccctgccttgaactggggcaccatcccctcaccctaaaa 51066283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 27 - 118
Target Start/End: Original strand, 40012550 - 40012640
Alignment:
Q  27 ggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaa 118  Q
    |||||||||||||||||| | ||||||| ||||||| ||||| |  |||||||||||| | ||||||| || |||| ||| ||||| |||||    
T  40012550 ggagggaggtaaatgtaaatccctttgtgagtgctc-ttgagtcataaggtcttccctacgttggactaggacaccgtcctctcacactaaa 40012640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 69 - 114
Target Start/End: Complemental strand, 28202643 - 28202598
Alignment:
Q  69 cccgaaggtcttccctgccttggactggggcaccatcccctcaccc 114  Q
    |||||||||||| |||| ||| |||||| |||||||||||||||||    
T  28202643 cccgaaggtctttcctgtcttagactggagcaccatcccctcaccc 28202598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 116
Target Start/End: Original strand, 28202701 - 28202782
Alignment:
Q  35 gtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcacccta 116  Q
    |||||||||| | | |||||||||| ||| |||||| |||| |||||| ||||||  | ||  |||||||||||||||||||    
T  28202701 gtaaatgtaaatgcatttgtaagtgttctatgagcctgaagatcttccttgcctttaattgatgcaccatcccctcacccta 28202782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 102; Significance: 9e-51; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 17136398 - 17136519
Alignment:
Q  1 cgggttcgagctccattagtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggca 100  Q
    ||||||||||| || |||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  17136398 cgggttcgagccccgttagtgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccccgccttggactggggca 17136497  T
Q  101 ccatcccctcaccctaaaattt 122  Q
    ||||||||||||||||||||||    
T  17136498 ccatcccctcaccctaaaattt 17136519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 45137091 - 45136970
Alignment:
Q  1 cgggttcgagctccattagtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggca 100  Q
    ||||||||||| ||  ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45137091 cgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggca 45136992  T
Q  101 ccatcccctcaccctaaaattt 122  Q
    ||||||| ||||||||||||||    
T  45136991 ccatcccttcaccctaaaattt 45136970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 5 - 122
Target Start/End: Original strand, 44650408 - 44650525
Alignment:
Q  5 ttcgagctccattagtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccat 104  Q
    |||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||    
T  44650408 ttcgagctccgttagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagtccgaagatcttccctgccttggaccggggcaccat 44650507  T
Q  105 cccctcaccctaaaattt 122  Q
    ||||||||||||||||||    
T  44650508 cccctcaccctaaaattt 44650525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 40156051 - 40156172
Alignment:
Q  1 cgggttcgagctccattagtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggca 100  Q
    ||||||||||| ||  ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||    
T  40156051 cgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctaccttgaactggggca 40156150  T
Q  101 ccatcccctcaccctaaaattt 122  Q
    ||||||||||||| ||||||||    
T  40156151 ccatcccctcaccataaaattt 40156172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 19 - 122
Target Start/End: Complemental strand, 36836432 - 36836329
Alignment:
Q  19 gtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaa 118  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||    
T  36836432 gtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaagatcttccctgccttggactggggcaccatcccctcaccttaaa 36836333  T
Q  119 attt 122  Q
    ||||    
T  36836332 attt 36836329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 20 - 122
Target Start/End: Complemental strand, 2754153 - 2754051
Alignment:
Q  20 tgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaa 119  Q
    |||||| |||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  2754153 tgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagctcgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaa 2754054  T
Q  120 ttt 122  Q
    |||    
T  2754053 ttt 2754051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 25987783 - 25987661
Alignment:
Q  1 cgggttcgagctccattagtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtc-ttccctgccttggactggggc 99  Q
    ||||||||||| ||  ||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |||||||    
T  25987783 cgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagtccgaaggtctttccctgccttggtctggggc 25987684  T
Q  100 accatcccctcaccctaaaattt 122  Q
    |||||||||||||||||||||||    
T  25987683 accatcccctcaccctaaaattt 25987661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 17 - 122
Target Start/End: Complemental strand, 36380237 - 36380132
Alignment:
Q  17 tagtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcacccta 116  Q
    ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||    
T  36380237 tagtgcctttggagggaggtaaatgtaattccctttgtaagtgctctttgagcccgaaggtcttccctaccttggactgaggcaccatcccctcacccta 36380138  T
Q  117 aaattt 122  Q
    ||||||    
T  36380137 aaattt 36380132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 17 - 122
Target Start/End: Complemental strand, 10745337 - 10745232
Alignment:
Q  17 tagtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcacccta 116  Q
    |||||||||  |||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  10745337 tagtgcctttagagggaggtaaatgtaattatctttgtaagtgctctttgaacccgaaggtattccctgccttggactggggcaccatcccctcacccta 10745238  T
Q  117 aaattt 122  Q
    ||||||    
T  10745237 aaattt 10745232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 17 - 122
Target Start/End: Original strand, 21637924 - 21638029
Alignment:
Q  17 tagtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcacccta 116  Q
    ||||||||| |||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||||||| |||||||||||||||||||||    
T  21637924 tagtgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccaaaggtcttctctgccttggactagggcaccatcccctcacccta 21638023  T
Q  117 aaattt 122  Q
    ||||||    
T  21638024 aaattt 21638029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 17 - 113
Target Start/End: Complemental strand, 6672898 - 6672802
Alignment:
Q  17 tagtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcacc 113  Q
    ||||||||| ||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6672898 tagtgcctttggagggaggtaaatgtaattacctttgtacgcgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcacc 6672802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 17 - 122
Target Start/End: Complemental strand, 558544 - 558439
Alignment:
Q  17 tagtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcacccta 116  Q
    ||||||||| |||||||||||||||||||||| ||||||||||||||||||||  ||||||||||||| ||||||| |||||||||||||||||||||||    
T  558544 tagtgcctttggagggaggtaaatgtaattacttttgtaagtgctctttgagctagaaggtcttcccttccttggaatggggcaccatcccctcacccta 558445  T
Q  117 aaattt 122  Q
    ||||||    
T  558444 aaattt 558439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 5039431 - 5039552
Alignment:
Q  1 cgggttcgagctccattagtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggca 100  Q
    ||||||||||||||  |||||| ||  |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||    
T  5039431 cgggttcgagctccgctagtgcttttagagggaggtaaacgtaattacctttgtaagtgctctttgagcccgaagatcttccctaccttggactagggca 5039530  T
Q  101 ccatcccctcaccctaaaattt 122  Q
    |||||||||||| |||||||||    
T  5039531 ccatcccctcactctaaaattt 5039552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 17 - 122
Target Start/End: Original strand, 26690181 - 26690286
Alignment:
Q  17 tagtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcacccta 116  Q
    |||||| || ||||||||||||||||||||||||||||||||| |||||| |  ||||||||||||||||||||||||| ||||||||||||||||||||    
T  26690181 tagtgcttttggagggaggtaaatgtaattacctttgtaagtgatctttgtgttcgaaggtcttccctgccttggactgaggcaccatcccctcacccta 26690280  T
Q  117 aaattt 122  Q
    ||||||    
T  26690281 aaattt 26690286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 33066601 - 33066722
Alignment:
Q  1 cgggttcgagctccattagtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggca 100  Q
    |||||||||||| || ||||| ||| |||| ||||||||||||| || |||||||||||||||||||||| |||||||||| || |||||||||||||||    
T  33066601 cgggttcgagcttcactagtgtctttggagagaggtaaatgtaaatatctttgtaagtgctctttgagcctgaaggtcttctctaccttggactggggca 33066700  T
Q  101 ccatcccctcaccctaaaattt 122  Q
    ||||||||||| ||||||||||    
T  33066701 ccatcccctcatcctaaaattt 33066722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 2 - 120
Target Start/End: Complemental strand, 30372800 - 30372682
Alignment:
Q  2 gggttcgagctccattagtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcac 101  Q
    |||||||||||||  ||||||||| ||| |||||||||||||| || |||||| ||||||||||||||||||||||||||| ||||||| ||||||| ||    
T  30372800 gggttcgagctccgctagtgcctttggaaggaggtaaatgtaaatatctttgttagtgctctttgagcccgaaggtcttccatgccttgaactggggtac 30372701  T
Q  102 catcccctcaccctaaaat 120  Q
    ||| |||||||||||||||    
T  30372700 cataccctcaccctaaaat 30372682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 2357196 - 2357076
Alignment:
Q  1 cgggttcgagctccattagtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggca 100  Q
    |||||||||| |||| |||| |||| |||||||||||||||||| |||| |||||| |||| ||||||  |||||||||||| |||||||||||||||||    
T  2357196 cgggttcgagttccactagtacctttggagggaggtaaatgtaaataccattgtaaatgct-tttgagttcgaaggtcttccatgccttggactggggca 2357098  T
Q  101 ccatcccctcaccctaaaattt 122  Q
    ||||||||||||||||||||||    
T  2357097 ccatcccctcaccctaaaattt 2357076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 17 - 122
Target Start/End: Original strand, 3200908 - 3201013
Alignment:
Q  17 tagtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcacccta 116  Q
    ||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |||| ||||| ||||||| ||||||||||||||| |||| |||||    
T  3200908 tagtgcctttggagggaggtaaatgtaattacctttgtaagtgttctttgagcctgaagatcttctctgccttagactggggcaccatctcctcgcccta 3201007  T
Q  117 aaattt 122  Q
    ||||||    
T  3201008 aaattt 3201013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 27 - 123
Target Start/End: Complemental strand, 13047248 - 13047155
Alignment:
Q  27 ggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaattta 123  Q
    |||||||||||||| ||||||||||   ||||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||    
T  13047248 ggagggaggtaaatataattacctt---aagtgctctttgagcccaaagatcttccctgccttggactggagcaccatcccctcaccctaaaattta 13047155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 27 - 122
Target Start/End: Original strand, 21487185 - 21487281
Alignment:
Q  27 ggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccat-cccctcaccctaaaattt 122  Q
    |||||||||||||||||| ||  ||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||| ||||||||||    
T  21487185 ggagggaggtaaatgtaaatatttttgtaagtgctctttgagcccgaaagtcttccctgccttagactggggcaccatccccctcatcctaaaattt 21487281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 17 - 122
Target Start/End: Complemental strand, 7860251 - 7860146
Alignment:
Q  17 tagtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcacccta 116  Q
    ||||||||| |||||||||||||||||  ||| |||||||||| ||||||||||||||| | ||| ||||||||||||| |||| ||||||||| |||||    
T  7860251 tagtgcctttggagggaggtaaatgtacatacatttgtaagtgttctttgagcccgaagattttctctgccttggactgaggcatcatcccctctcccta 7860152  T
Q  117 aaattt 122  Q
    ||||||    
T  7860151 aaattt 7860146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 73 - 122
Target Start/End: Complemental strand, 2098875 - 2098826
Alignment:
Q  73 aaggtcttccctgccttggactggggcaccatcccctcaccctaaaattt 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2098875 aaggtcttccctgccttggactggggcaccatcccctcaccctaaaattt 2098826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 32 - 119
Target Start/End: Complemental strand, 4553648 - 4553561
Alignment:
Q  32 gaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaa 119  Q
    ||||||||| ||| ||| ||||||||| ||||||||| ||| |||||||| ||| ||| |||||||||||||||||||||| ||||||    
T  4553648 gaggtaaatataaatacatttgtaagtactctttgagtccggaggtcttctctgtcttagactggggcaccatcccctcactctaaaa 4553561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 68
Target Start/End: Complemental strand, 30477280 - 30477240
Alignment:
Q  28 gagggaggtaaatgtaattacctttgtaagtgctctttgag 68  Q
    ||||||||||||| ||| ||||||||||||| |||||||||    
T  30477280 gagggaggtaaatctaaatacctttgtaagttctctttgag 30477240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 101; Significance: 4e-50; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 2 - 122
Target Start/End: Complemental strand, 35163870 - 35163750
Alignment:
Q  2 gggttcgagctccattagtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcac 101  Q
    |||||||||| ||| || |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35163870 gggttcgagccccactaatgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcac 35163771  T
Q  102 catcccctcaccctaaaattt 122  Q
    |||||||||||||||||||||    
T  35163770 catcccctcaccctaaaattt 35163750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 17 - 122
Target Start/End: Original strand, 20685352 - 20685457
Alignment:
Q  17 tagtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcacccta 116  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  20685352 tagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccttcacccta 20685451  T
Q  117 aaattt 122  Q
    ||||||    
T  20685452 aaattt 20685457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 2 - 122
Target Start/End: Complemental strand, 19686947 - 19686827
Alignment:
Q  2 gggttcgagctccattagtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcac 101  Q
    |||||||||| ||  ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||| ||||||||||     
T  19686947 gggttcgagcccctctagtgcctttgtagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaagatctttcctcccttagactggggcat 19686848  T
Q  102 catcccctcaccctaaaattt 122  Q
    |||||||||||||||||||||    
T  19686847 catcccctcaccctaaaattt 19686827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 17 - 122
Target Start/End: Original strand, 17948707 - 17948812
Alignment:
Q  17 tagtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcacccta 116  Q
    ||||| ||| |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||    
T  17948707 tagtgtctttggagagaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactgggacaccatcccctcacctta 17948806  T
Q  117 aaattt 122  Q
    ||||||    
T  17948807 aaattt 17948812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 16 - 119
Target Start/End: Original strand, 15070151 - 15070254
Alignment:
Q  16 ttagtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccct 115  Q
    |||||||||| |||||||||||||| ||||||| |||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||     
T  15070151 ttagtgcctttggagggaggtaaatataattacatttgtaagtgttcattgagcccgaaggtcttccctgccttagactggggcaccatcccctcaccca 15070250  T
Q  116 aaaa 119  Q
    ||||    
T  15070251 aaaa 15070254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 5 - 122
Target Start/End: Complemental strand, 2711851 - 2711740
Alignment:
Q  5 ttcgagctccattagtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccat 104  Q
    ||||||| ||| |||||| || |||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||      ||||||    
T  2711851 ttcgagccccactagtgcttttggagggaggtaaatgtaaatacctttgtaagtgctctttgagctcgaaggtcttccctgccttgga------caccat 2711758  T
Q  105 cccctcaccctaaaattt 122  Q
    ||||||||||||||||||    
T  2711757 cccctcaccctaaaattt 2711740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 17 - 122
Target Start/End: Complemental strand, 14505628 - 14505525
Alignment:
Q  17 tagtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcacccta 116  Q
    |||||| || ||||||||||||||||||| |||||||||| |  |||||| || ||||| |||||| |||||||||||||||||||||||||||| ||||    
T  14505628 tagtgcttttggagggaggtaaatgtaat-acctttgtaaatattctttgggcgcgaagatcttccgtgccttggactggggcaccatcccctca-ccta 14505531  T
Q  117 aaattt 122  Q
    ||||||    
T  14505530 aaattt 14505525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 93
Target Start/End: Original strand, 24336642 - 24336718
Alignment:
Q  17 tagtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggac 93  Q
    |||| |||| |||||||||||||||||| ||| |||||||||| | |||||||| |||| |||||||||||||||||    
T  24336642 tagtccctttggagggaggtaaatgtaaatacttttgtaagtgttttttgagcctgaagatcttccctgccttggac 24336718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 14496363 - 14496406
Alignment:
Q  1 cgggttcgagctccattagtgccttcggagggaggtaaatgtaa 44  Q
    ||||||||||| ||| ||||||||| ||||||||||||||||||    
T  14496363 cgggttcgagccccactagtgcctttggagggaggtaaatgtaa 14496406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 101; Significance: 4e-50; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 30370181 - 30370061
Alignment:
Q  1 cgggttcgagctccattagtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggca 100  Q
    ||||||||||| ||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30370181 cgggttcgagccccactagtgtctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggca 30370082  T
Q  101 ccatcccctcaccctaaaatt 121  Q
    ||||||||||||| |||||||    
T  30370081 ccatcccctcaccttaaaatt 30370061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 30054563 - 30054445
Alignment:
Q  1 cgggttcgagctccattagtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggca 100  Q
    ||||||||||| ||  ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  30054563 cgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaaatgctctttgagcccgaaggtcttccctgccttggactggggca 30054464  T
Q  101 ccatcccctcaccctaaaa 119  Q
    |||||||||||||||||||    
T  30054463 ccatcccctcaccctaaaa 30054445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 2 - 122
Target Start/End: Original strand, 12025193 - 12025313
Alignment:
Q  2 gggttcgagctccattagtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcac 101  Q
    |||||||||| ||||||||||||| ||||| |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||    
T  12025193 gggttcgagccccattagtgcctttggaggaaggtaaatgtaattacctttgtaagtactatttgagcccgaaggtcttccctgccttggactggggcac 12025292  T
Q  102 catcccctcaccctaaaattt 122  Q
    || ||||||||||||||||||    
T  12025293 caccccctcaccctaaaattt 12025313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 17 - 124
Target Start/End: Original strand, 22024130 - 22024237
Alignment:
Q  17 tagtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcacccta 116  Q
    ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  22024130 tagtgcctttggatggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttctctgccttggactggggcaccatcccctcacccta 22024229  T
Q  117 aaatttat 124  Q
    ||||||||    
T  22024230 aaatttat 22024237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 19 - 122
Target Start/End: Complemental strand, 14498182 - 14498079
Alignment:
Q  19 gtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaa 118  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| ||||||||||||||||||    
T  14498182 gtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagaccaaaggtcttccctgccttggactggggcgccatcccctcaccctaaa 14498083  T
Q  119 attt 122  Q
    ||||    
T  14498082 attt 14498079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 17 - 122
Target Start/End: Original strand, 45324033 - 45324138
Alignment:
Q  17 tagtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcacccta 116  Q
    |||||| || |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  45324033 tagtgcttttggagggaggtaaatgtaaatacctttgtaagtgctccttgagcccgaaggtcttccctgctttggactggggcaccatcccctcacccta 45324132  T
Q  117 aaattt 122  Q
    ||||||    
T  45324133 aaattt 45324138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 30850961 - 30850841
Alignment:
Q  1 cgggttcgagctccattagtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggca 100  Q
    ||||||||||| || |||||| ||| |||||||||||||| ||||| |||||||||||||||||||| |||||||||||| |||| ||||||||||||||    
T  30850961 cgggttcgagccccgttagtgtctttggagggaggtaaatataattgcctttgtaagtgctctttgaacccgaaggtctttcctgtcttggactggggca 30850862  T
Q  101 ccatcccctcaccctaaaatt 121  Q
    |||||||||||||||||||||    
T  30850861 ccatcccctcaccctaaaatt 30850841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 21090126 - 21090244
Alignment:
Q  1 cgggttcgagctccattagtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggca 100  Q
    ||||||||||| ||  ||||||| | |||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  21090126 cgggttcgagccccgctagtgccgttggagggaggtaaatgtaaatacatttgtaaatgctctttgagcccgaaggtcttccctgccttggactggggca 21090225  T
Q  101 ccatcccctcaccctaaaa 119  Q
    |||||||||||| ||||||    
T  21090226 ccatcccctcactctaaaa 21090244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 17 - 122
Target Start/End: Original strand, 20014485 - 20014590
Alignment:
Q  17 tagtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcacccta 116  Q
    |||| |||| |||||||||||||||||||||| ||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||    
T  20014485 tagtacctttggagggaggtaaatgtaattacatttgtaaatgctctttgagcctgaaggtcttccctgccttggactgaggcaccatcccctcacccta 20014584  T
Q  117 aaattt 122  Q
    ||||||    
T  20014585 aaattt 20014590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 4573390 - 4573511
Alignment:
Q  1 cgggttcgagctccattagtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggca 100  Q
    ||||||||||| ||| || || ||| |||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||  |||||||| ||||    
T  4573390 cgggttcgagccccactaatgtctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagctcgaaggtcttccctgttttggactgaggca 4573489  T
Q  101 ccatcccctcaccctaaaattt 122  Q
    | ||||||||||||||||||||    
T  4573490 ctatcccctcaccctaaaattt 4573511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 34 - 113
Target Start/End: Complemental strand, 35371833 - 35371754
Alignment:
Q  34 ggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcacc 113  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  35371833 ggtaaatgtaattacctttgtaagtgctctttgagcccgaagttcttccctgccttggactggggcaccatcccctcacc 35371754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 17 - 122
Target Start/End: Complemental strand, 33762645 - 33762540
Alignment:
Q  17 tagtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcacccta 116  Q
    |||||||||  |||||||| ||||||||||||||||||||||| | |||||||||||| || |||||||||||||||||||||| |||||||||||||||    
T  33762645 tagtgcctttagagggaggcaaatgtaattacctttgtaagtgttttttgagcccgaaagttttccctgccttggactggggcatcatcccctcacccta 33762546  T
Q  117 aaattt 122  Q
    ||||||    
T  33762545 aaattt 33762540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 3 - 122
Target Start/End: Complemental strand, 33763373 - 33763254
Alignment:
Q  3 ggttcgagctccattagtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcacc 102  Q
    ||||||||| ||  |||||||||  |||||||| ||||||||||||||||||||||| | |||||||||||| || |||||||||||| ||||||||| |    
T  33763373 ggttcgagccccgctagtgcctttagagggaggcaaatgtaattacctttgtaagtgttttttgagcccgaaagttttccctgccttgaactggggcatc 33763274  T
Q  103 atcccctcaccctaaaattt 122  Q
    ||||||||||||||||||||    
T  33763273 atcccctcaccctaaaattt 33763254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 147 - 229
Target Start/End: Original strand, 43566634 - 43566716
Alignment:
Q  147 cacgtctaattaatcttcaatctagttataggacattaattatgggaaatactatttaacgcgagaaaataatcccgaccttg 229  Q
    ||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  43566634 cacgtctaattaatcttcactttagttgtaggacattaattatgggaaatactatttaacgcgagaaaataatcccgaacttg 43566716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 2 - 119
Target Start/End: Complemental strand, 44438670 - 44438553
Alignment:
Q  2 gggttcgagctccattagtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcac 101  Q
    |||||||||||||  || |||||| |||||||||||||||||||||| |||||||||| ||||| |   |||||||||||||||||||| ||||||| ||    
T  44438670 gggttcgagctccgctaatgcctttggagggaggtaaatgtaattacttttgtaagtgttctttaaattcgaaggtcttccctgccttgaactggggtac 44438571  T
Q  102 catcccctcaccctaaaa 119  Q
    ||||||||| || |||||    
T  44438570 catcccctcgccttaaaa 44438553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 49 - 119
Target Start/End: Original strand, 35618034 - 35618104
Alignment:
Q  49 ctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaa 119  Q
    |||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||    
T  35618034 ctttgtaagtgctctttgagcccgaaggtcttccttgctttggactggggtaccatcccctcaccctaaaa 35618104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 62 - 124
Target Start/End: Original strand, 17015192 - 17015254
Alignment:
Q  62 ctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaatttat 124  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||    
T  17015192 ctttgagcccgaaggtcttccctgctttggactggggcaccatcccctcatcctaaaatttat 17015254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 118
Target Start/End: Complemental strand, 17291897 - 17291828
Alignment:
Q  48 cctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaa 118  Q
    ||||||||| |||||||||| || ||||||||| ||||||||||||| |||   ||||||| |||||||||    
T  17291897 cctttgtaaatgctctttgaaccagaaggtctt-cctgccttggactagggtgacatccccgcaccctaaa 17291828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 219 - 248
Target Start/End: Original strand, 43566717 - 43566746
Alignment:
Q  219 tcccgaccttgaattctactctgccctttg 248  Q
    ||||||||||||||||||||||||||||||    
T  43566717 tcccgaccttgaattctactctgccctttg 43566746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 98; Significance: 2e-48; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 19723322 - 19723443
Alignment:
Q  1 cgggttcgagctccattagtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggca 100  Q
    ||||||||||| ||  ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  19723322 cgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccaaagatcttccctgccttggactggggca 19723421  T
Q  101 ccatcccctcaccctaaaattt 122  Q
    ||||||||||||||||||||||    
T  19723422 ccatcccctcaccctaaaattt 19723443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 17 - 119
Target Start/End: Original strand, 17095577 - 17095679
Alignment:
Q  17 tagtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcacccta 116  Q
    ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17095577 tagtgcctttggagggaggtaaatgtaattacctttgtaaatgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcacccta 17095676  T
Q  117 aaa 119  Q
    |||    
T  17095677 aaa 17095679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 17 - 122
Target Start/End: Original strand, 11404028 - 11404133
Alignment:
Q  17 tagtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcacccta 116  Q
    ||||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11404028 tagtgtctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcacccta 11404127  T
Q  117 aaattt 122  Q
    ||||||    
T  11404128 aaattt 11404133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 17 - 122
Target Start/End: Complemental strand, 32296744 - 32296639
Alignment:
Q  17 tagtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcacccta 116  Q
    ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  32296744 tagtgcctttgaagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggattggggcaccatcccctcacccta 32296645  T
Q  117 aaattt 122  Q
    ||||||    
T  32296644 aaattt 32296639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 20 - 122
Target Start/End: Original strand, 22711539 - 22711641
Alignment:
Q  20 tgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaa 119  Q
    |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||    
T  22711539 tgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccttgccttggactggggcaccatcccctcatcctaaaa 22711638  T
Q  120 ttt 122  Q
    |||    
T  22711639 ttt 22711641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 4840151 - 4840272
Alignment:
Q  1 cgggttcgagctccattagtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggca 100  Q
    ||||||||||| ||  ||||||||| |||||||||||||||| |||||| |||||||||||||||||| || |||||||||||||||||||||| |||||    
T  4840151 cgggttcgagccccgctagtgcctttggagggaggtaaatgtcattaccattgtaagtgctctttgagtccaaaggtcttccctgccttggactagggca 4840250  T
Q  101 ccatcccctcaccctaaaattt 122  Q
    ||||||||||||||||||||||    
T  4840251 ccatcccctcaccctaaaattt 4840272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 27 - 122
Target Start/End: Original strand, 36261683 - 36261778
Alignment:
Q  27 ggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaattt 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| ||||||||    
T  36261683 ggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaagatcttccctgccttgaactggggcaccatcccctcaccttaaaattt 36261778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 17 - 122
Target Start/End: Original strand, 29767215 - 29767318
Alignment:
Q  17 tagtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcacccta 116  Q
    ||||||||| | ||||||||||||  ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29767215 tagtgcctttgaagggaggtaaat--aattacctttgtaagtgttctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcacccta 29767312  T
Q  117 aaattt 122  Q
    ||||||    
T  29767313 aaattt 29767318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 2 - 119
Target Start/End: Complemental strand, 28739681 - 28739564
Alignment:
Q  2 gggttcgagctccattagtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcac 101  Q
    |||||| ||| ||| ||||||||| ||||| | |||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||  ||||    
T  28739681 gggttcaagccccactagtgcctttggaggaaagtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctaccttggactgcagcac 28739582  T
Q  102 catcccctcaccctaaaa 119  Q
    ||||||||||||||||||    
T  28739581 catcccctcaccctaaaa 28739564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 19 - 102
Target Start/End: Complemental strand, 21355087 - 21355004
Alignment:
Q  19 gtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcacc 102  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  21355087 gtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgaacccgaaggtcttccctgccttggactggggcacc 21355004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 36 - 119
Target Start/End: Complemental strand, 11909509 - 11909426
Alignment:
Q  36 taaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaa 119  Q
    ||||||||| ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  11909509 taaatgtaaatacctttctaagtgctctttgagctcgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaa 11909426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 27 - 118
Target Start/End: Original strand, 43288109 - 43288200
Alignment:
Q  27 ggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaa 118  Q
    |||||||||||||||||||||||||||||| || | |||||| ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  43288109 ggagggaggtaaatgtaattacctttgtaattgatttttgagtccgaaggtcttccctgccttggactggagcaccatcccctcaccctaaa 43288200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 35 - 122
Target Start/End: Original strand, 41553330 - 41553417
Alignment:
Q  35 gtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaattt 122  Q
    |||||||||| |||||||||||||| ||||||||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||    
T  41553330 gtaaatgtaaatacctttgtaagtgttctttgagctcgaaggtcttccctgccttagactggagcaccatcccctcaccctaaaattt 41553417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 4 - 122
Target Start/End: Original strand, 30682853 - 30682970
Alignment:
Q  4 gttcgagctccattagtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcacca 103  Q
    |||||||| ||| | ||||||| |||| ||| ||||||||| ||| |||||||||| ||||||||||||||| |||||||||||||||||| ||||||||    
T  30682853 gttcgagccccactggtgcctttggagagagataaatgtaaatacttttgtaagtgttctttgagcccgaagatcttccctgccttggact-gggcacca 30682951  T
Q  104 tcccctcaccctaaaattt 122  Q
    |||||||||| ||||||||    
T  30682952 tcccctcaccttaaaattt 30682970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 5 - 89
Target Start/End: Complemental strand, 24475113 - 24475029
Alignment:
Q  5 ttcgagctccattagtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 89  Q
    ||||||||||  ||||||||| |||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||    
T  24475113 ttcgagctccgctagtgcctttggagggaggtaaatgtaaatacctttgtaagtgttctttgagcccgaaggtctttcctgcctt 24475029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 17 - 122
Target Start/End: Original strand, 11610307 - 11610412
Alignment:
Q  17 tagtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcacccta 116  Q
    ||||||||| ||||  |||||||| ||| || ||||||||||||| ||| |||||||||||||| | |  ||||||||||||||||||||||||||||||    
T  11610307 tagtgcctttggagaaaggtaaatataaatatctttgtaagtgctgtttaagcccgaaggtcttacttatcttggactggggcaccatcccctcacccta 11610406  T
Q  117 aaattt 122  Q
    ||||||    
T  11610407 aaattt 11610412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 62 - 122
Target Start/End: Complemental strand, 27879620 - 27879560
Alignment:
Q  62 ctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaattt 122  Q
    ||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||||||    
T  27879620 ctttgagcctgaagatcttccctaccttggactggggcaccatcccctcaccctaaaattt 27879560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 62 - 122
Target Start/End: Complemental strand, 28019801 - 28019741
Alignment:
Q  62 ctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaattt 122  Q
    ||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||||||    
T  28019801 ctttgagcctgaagatcttccctaccttggactggggcaccatcccctcaccctaaaattt 28019741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 27881109 - 27881044
Alignment:
Q  1 cgggttcgagctccattagtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttg 66  Q
    ||||||||||| ||  ||||||||| | |||||||||||||||| |||||||||||||||||||||    
T  27881109 cgggttcgagccccgctagtgcctttgaagggaggtaaatgtaaatacctttgtaagtgctctttg 27881044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 28021290 - 28021225
Alignment:
Q  1 cgggttcgagctccattagtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttg 66  Q
    ||||||||||| ||  ||||||||| | |||||||||||||||| |||||||||||||||||||||    
T  28021290 cgggttcgagccccgctagtgcctttgaagggaggtaaatgtaaatacctttgtaagtgctctttg 28021225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 75 - 118
Target Start/End: Complemental strand, 44741967 - 44741924
Alignment:
Q  75 ggtcttccctgccttggactggggcaccatcccctcaccctaaa 118  Q
    |||||| |||||||||||||||||  ||||||||||||||||||    
T  44741967 ggtcttacctgccttggactggggtgccatcccctcaccctaaa 44741924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 94; Significance: 6e-46; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 17064334 - 17064455
Alignment:
Q  1 cgggttcgagctccattagtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggca 100  Q
    |||||||||||  |  ||||||||| |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  17064334 cgggttcgagcctcgctagtgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttaagcccgaaggtcttccctgccttggactggggca 17064433  T
Q  101 ccatcccctcaccctaaaattt 122  Q
    ||||||||||||||||||||||    
T  17064434 ccatcccctcaccctaaaattt 17064455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 20983124 - 20983006
Alignment:
Q  1 cgggttcgagctccattagtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggca 100  Q
    ||||||||||| ||  |||||||||||||| |||||||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  20983124 cgggttcgagccccgctagtgccttcggagagaggtaaatgcaattacatttgtaagtgctctttgagcccgaaagtcttccctgccttggactggggca 20983025  T
Q  101 ccatcccctcaccctaaaa 119  Q
    |||||||||||||||||||    
T  20983024 ccatcccctcaccctaaaa 20983006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 31 - 122
Target Start/End: Original strand, 41910865 - 41910956
Alignment:
Q  31 ggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaattt 122  Q
    ||||||||||||||||| ||||||||||| |||||||||||||| |||||| |||||||| |||||||||||||||||||||| ||||||||    
T  41910865 ggaggtaaatgtaattaactttgtaagtgttctttgagcccgaatgtcttctctgccttgaactggggcaccatcccctcaccttaaaattt 41910956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 38 - 122
Target Start/End: Original strand, 37976598 - 37976682
Alignment:
Q  38 aatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaattt 122  Q
    ||||||| |||||||||||||||| ||||||||||||||| || ||||||||| |||||||||||||||||||||||||||||||    
T  37976598 aatgtaaatacctttgtaagtgctatttgagcccgaaggtttttcctgccttgaactggggcaccatcccctcaccctaaaattt 37976682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 27 - 117
Target Start/End: Original strand, 31673867 - 31673956
Alignment:
Q  27 ggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaa 117  Q
    |||| |||| |||||||| | |||||| |||||| |||||||||| |||||| |||||||||||||||||||||||| |||||||||||||    
T  31673867 ggagagaggaaaatgtaaatccctttg-aagtgccctttgagccctaaggtcctccctgccttggactggggcaccaacccctcaccctaa 31673956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 188 - 245
Target Start/End: Original strand, 33001304 - 33001361
Alignment:
Q  188 atgggaaatactatttaacgcgagaaaataatcccgaccttgaattctactctgccct 245  Q
    ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||    
T  33001304 atgggaaatactatttaacgcgagaaaataatcccgaacttgtattctactctgccct 33001361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 186 - 248
Target Start/End: Original strand, 33014624 - 33014685
Alignment:
Q  186 ttatgggaaatactatttaacgcgagaaaataatcccgaccttgaattctactctgccctttg 248  Q
    |||||||||||||||||||| |||||||| ||||||||| |||| ||||||||||||||||||    
T  33014624 ttatgggaaatactatttaatgcgagaaa-taatcccgaacttgtattctactctgccctttg 33014685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 7 - 122
Target Start/End: Complemental strand, 5009531 - 5009417
Alignment:
Q  7 cgagctccattagtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcc 106  Q
    ||||| || |||||| ||| |||| ||| ||||||||| ||  ||||||| || |||||||  ||||||||||||| ||||||| ||||| ||| |||||    
T  5009531 cgagccccgttagtgtctttggagagagataaatgtaaatatttttgtaaatgttctttgaatccgaaggtcttccatgccttgaactggtgcatcatcc 5009432  T
Q  107 cctcaccctaaaattt 122  Q
    || |||||||||||||    
T  5009431 cc-caccctaaaattt 5009417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 27 - 118
Target Start/End: Complemental strand, 39162947 - 39162859
Alignment:
Q  27 ggagggaggtaaatgtaattacctt-tgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaa 118  Q
    ||||| |||||||||||| |||||| ||||| |||||||||||||    |||||||  ||||||||||||||||||| |||| ||||||||||    
T  39162947 ggaggaaggtaaatgtaaataccttgtgtaaatgctctttgagcc----ggtcttctgtgccttggactggggcaccgtcccatcaccctaaa 39162859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 79 - 122
Target Start/End: Complemental strand, 35237102 - 35237059
Alignment:
Q  79 ttccctgccttggactggggcaccatcccctcaccctaaaattt 122  Q
    ||||||||||||||||| |||||||||||||||| |||||||||    
T  35237102 ttccctgccttggactgaggcaccatcccctcactctaaaattt 35237059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 66 - 121
Target Start/End: Complemental strand, 38255614 - 38255559
Alignment:
Q  66 gagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaatt 121  Q
    |||||| ||||||||||||   |||||||||||||||||| ||||||| |||||||    
T  38255614 gagcccaaaggtcttccctattttggactggggcaccatctcctcaccttaaaatt 38255559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 4 - 122
Target Start/End: Complemental strand, 107809 - 107692
Alignment:
Q  4 gttcgagctccattagtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcacca 103  Q
    |||||||| ||  ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  107809 gttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctaccctgccttggactggggcacca 107710  T
Q  104 tcccctcaccctaaaattt 122  Q
    |||||||| ||||||||||    
T  107709 tcccctca-cctaaaattt 107692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0691 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 97
Target Start/End: Complemental strand, 7074 - 6994
Alignment:
Q  17 tagtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggg 97  Q
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T  7074 tagtgcgtttggagggaagtaaatgtaattacctttgcaagtgttctttgagtccgaaggtcttccctaccttggactggg 6994  T

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