View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2859_high_8 (Length: 248)
Name: NF2859_high_8
Description: NF2859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2859_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 47344730 - 47344967
Alignment:
| Q |
1 |
aaggcatttcattaattaaaatttgggttatacagaacagacggaaacatgataaaaaatagcgtgaggagaatacgatagggatgcttgcgctaaacat |
100 |
Q |
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| T |
47344730 |
aaggcatttcattaattaaaatttgggttatacagaacagacggaaacatgataaaaaatagcgtgaggagaatacgatagggatgcttgcgctaaacat |
47344829 |
T |
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| Q |
101 |
gagcactactatttgttggtggcctggaaaaaacaaccctatagctgttatggcatataccattagactatgtttacttttcagtcaatattgcatacaa |
200 |
Q |
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| T |
47344830 |
gagcactactatttgttggtcgcctggaaaaaacaaccctataggtgttatggcatataccattagactatgtttacttttcagtcaatattgcatacaa |
47344929 |
T |
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| Q |
201 |
cgatggcttaaatttctgaactaaaggttaatgcccta |
238 |
Q |
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| T |
47344930 |
cgatggcttaaatttctgaactaaaggttaatgcccta |
47344967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 122 - 215
Target Start/End: Original strand, 1495189 - 1495288
Alignment:
| Q |
122 |
gcctggaaaaaacaaccctata--gctgttatggc----atataccattagactatgtttacttttcagtcaatattgcatacaacgatggcttaaattt |
215 |
Q |
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| T |
1495189 |
gcctggaaaaaacaaccctataagtgtgttatggcatatatataccattagactatgtttacttttcagtcaatattgcatacaacgatggcttaaattt |
1495288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 1495109 - 1495190
Alignment:
| Q |
1 |
aaggcatttcattaattaaaatttgggttatacagaacagacggaaacatgataaaaaatagcgtgaggagaatacgatagggatgc |
87 |
Q |
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| T |
1495109 |
aaggcatttcattaattaaaatttgggttatacag-----acggaaacataataaaaaatagtgtgaggagaatacgatagggatgc |
1495190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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