View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2859_low_1 (Length: 558)

Name: NF2859_low_1
Description: NF2859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2859_low_1
NF2859_low_1
[»] chr1 (9 HSPs)
chr1 (113-549)||(28237687-28238122)
chr1 (113-549)||(42772603-42773039)
chr1 (115-187)||(47914459-47914531)
chr1 (24-118)||(28238145-28238239)
chr1 (24-116)||(42772486-42772578)
chr1 (24-89)||(23260981-23261046)
chr1 (113-183)||(51854373-51854443)
chr1 (24-89)||(47914585-47914650)
chr1 (24-116)||(51854468-51854560)
[»] chr8 (2 HSPs)
chr8 (113-549)||(9374959-9375395)
chr8 (32-118)||(9375418-9375504)
[»] chr5 (3 HSPs)
chr5 (113-547)||(29656417-29656847)
chr5 (24-118)||(29656870-29656964)
chr5 (23-76)||(10647715-10647768)
[»] chr3 (16 HSPs)
chr3 (113-406)||(41828332-41828625)
chr3 (429-549)||(41828625-41828745)
chr3 (113-183)||(14175572-14175642)
chr3 (24-116)||(41828215-41828307)
chr3 (120-183)||(952892-952955)
chr3 (24-115)||(54418935-54419026)
chr3 (113-187)||(54419052-54419126)
chr3 (24-89)||(14175693-14175758)
chr3 (24-116)||(41828038-41828131)
chr3 (24-89)||(953011-953076)
chr3 (131-178)||(50833909-50833956)
chr3 (131-178)||(50841897-50841944)
chr3 (198-333)||(42658484-42658621)
chr3 (23-76)||(9640274-9640327)
chr3 (23-76)||(48760784-48760837)
chr3 (113-145)||(41828156-41828188)
[»] chr2 (6 HSPs)
chr2 (117-549)||(9059384-9059801)
chr2 (113-183)||(43800277-43800347)
chr2 (24-116)||(9059830-9059922)
chr2 (24-87)||(12447157-12447220)
chr2 (24-89)||(43800399-43800464)
chr2 (27-76)||(41750618-41750667)
[»] chr7 (8 HSPs)
chr7 (268-547)||(39445259-39445538)
chr7 (113-241)||(39445130-39445258)
chr7 (24-118)||(39445013-39445107)
chr7 (116-183)||(40722747-40722814)
chr7 (24-89)||(48829733-48829798)
chr7 (24-85)||(40722626-40722687)
chr7 (24-89)||(85271-85336)
chr7 (113-159)||(48829850-48829896)
[»] scaffold0007 (2 HSPs)
scaffold0007 (117-187)||(252369-252439)
scaffold0007 (24-89)||(252248-252313)
[»] chr6 (7 HSPs)
chr6 (113-187)||(29533950-29534023)
chr6 (113-183)||(29535490-29535560)
chr6 (113-183)||(29535720-29535790)
chr6 (113-187)||(29535260-29535330)
chr6 (24-116)||(29535815-29535907)
chr6 (24-67)||(29535398-29535441)
chr6 (24-67)||(29535628-29535671)
[»] chr4 (4 HSPs)
chr4 (113-183)||(6980664-6980734)
chr4 (24-89)||(16032600-16032665)
chr4 (24-89)||(56478894-56478959)
chr4 (24-87)||(6980548-6980611)


Alignment Details
Target: chr1 (Bit Score: 393; Significance: 0; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 113 - 549
Target Start/End: Complemental strand, 28238122 - 28237687
Alignment:
Q  113 ttggaacaaacctcctagcatttaccaatatatgttattaataacaatgatattttccaaagcaaaaatttgacccatatatgctatttgaaattcaatt 212  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  28238122 ttggaacaaacctactagcatttaccaatatatgttattaataacaatgatattttc-aaagcaaaaatttgacccatatatgctatttgaaattcaatt 28238024  T
Q  213 tctccctcattcactccttattttgtgtatttcgaaattagcaattagcctagctattgttgtgtcccttcctattttcatgcagcatttagtgcattct 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28238023 tctccctcattcactccttattttgtgtatttcgaaattagcaattagcctagctattgttgtgtcccttcctattttcatgcagcatttagtgcattct 28237924  T
Q  313 ttactgaataattggacggttccatgatatcagacttttagaatgcattgaaattcatcagcttttaatattacggttccaactaaaaacgaattatcta 412  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||      
T  28237923 ttactgaataattggacggttccatgatatcagacttttagaatgcattgaaattcctcagcttttaatattacggttccagctaaaaacgaattatccc 28237824  T
Q  413 tcttcttcctcatcactcaccactctgtagtctctctctttctactaatcttctttcatttgcttctacattaatttctcagcaacgagcaactcaccat 512  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||    
T  28237823 tcttcttcctcatcactcaccactctgtagtctctctcttcctactaatattctttcatttgcttctacaataatttctcagcaacgagcaactcaccat 28237724  T
Q  513 tttctcatcggaaacctgtccctccaccttttcatct 549  Q
    |||||||||||||| ||||||||||||||||||||||    
T  28237723 tttctcatcggaaatctgtccctccaccttttcatct 28237687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 113 - 549
Target Start/End: Original strand, 42772603 - 42773039
Alignment:
Q  113 ttggaacaaacctcctagcatttaccaatatatgttattaataacaatgatattttccaaagcaaaaatttgacccatatatgctatttgaaattcaatt 212  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||    
T  42772603 ttggaacaaacctactagcatttaccaatatatgttattaataacaatgatattttccaaagcaaaaatttgaccaatatatgctatttcaatttcaatt 42772702  T
Q  213 tctccctcattcactccttattttgtgtatttcgaaattagcaattagcctagctattgttgtgtcccttcctattttcatgcagcatttagtgcattct 312  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  42772703 tctccctcattcacttcttattttgtgtatttcgaaattagcaattagcctagctattgttgtgtcccttcctattttcatgcagcatttggtgcattct 42772802  T
Q  313 ttactgaataattggacggttccatgatatcagacttttagaatgcattgaaattcatcagcttttaatattacggttccaactaaaaacgaattatcta 412  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |||||||||||||||||     
T  42772803 ttactgaataattggacggttccatgatatcagacttttagaatgcattgaaattcctcaccttttaatattacggttccagctaaaaacgaattatctc 42772902  T
Q  413 tcttcttcctcatcactcaccactctgtagtctctctctttctactaatcttctttcatttgcttctacattaatttctcagcaacgagcaactcaccat 512  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  42772903 tcttcttcctcatcactcaccactctgtagtctctctctttctactaatcttctttcatttgcttctacaataatttctcagcaacgagcaactcaccat 42773002  T
Q  513 tttctcatcggaaacctgtccctccaccttttcatct 549  Q
    |||||||||||||||||||||||||||||||||||||    
T  42773003 tttctcatcggaaacctgtccctccaccttttcatct 42773039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 115 - 187
Target Start/End: Complemental strand, 47914531 - 47914459
Alignment:
Q  115 ggaacaaacctcctagcatttaccaatatatgttattaataacaatgatattttccaaagcaaaaatttgacc 187  Q
    |||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47914531 ggaacaaacctattagcatttaccaatatatgttattaataacaatgatattttccaaagcaaaaatttgacc 47914459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 24 - 118
Target Start/End: Complemental strand, 28238239 - 28238145
Alignment:
Q  24 gcaacaacttaaccctaaaaatttagctccaaaattgcagcattaaatgctaagtgagataaccctnnnnnnntttggccctaaagtgtttggaa 118  Q
    |||||||||||||| || |||||| |||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||    
T  28238239 gcaacaacttaaccttagaaatttggctccaaaattgcagcattaaatgctaagtgagataaccctaaaaaaatttggccctaaagtgtttggaa 28238145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 24 - 116
Target Start/End: Original strand, 42772486 - 42772578
Alignment:
Q  24 gcaacaacttaaccctaaaaatttagctccaaaattgcagcattaaatgctaagtgagataaccctnnnnnnntttggccctaaagtgtttgg 116  Q
    ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||    
T  42772486 gcaacaacttaaccctagaaatttggctccaaaattgcagcattaaatgctaagtgagataaccctaaaaaaaattggccctaaagtgtttgg 42772578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 24 - 89
Target Start/End: Original strand, 23260981 - 23261046
Alignment:
Q  24 gcaacaacttaaccctaaaaatttagctccaaaattgcagcattaaatgctaagtgagataaccct 89  Q
    ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||    
T  23260981 gcaacaacttaaccctagaaatttggctccaaaattgcagcattaaatgctaagtgagataaccct 23261046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 113 - 183
Target Start/End: Complemental strand, 51854443 - 51854373
Alignment:
Q  113 ttggaacaaacctcctagcatttaccaatatatgttattaataacaatgatattttccaaagcaaaaattt 183  Q
    ||||||||||||| || ||| |||||||||||||||||||||||||||||||||||||||||||| |||||    
T  51854443 ttggaacaaacctactggcacttaccaatatatgttattaataacaatgatattttccaaagcaagaattt 51854373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 24 - 89
Target Start/End: Complemental strand, 47914650 - 47914585
Alignment:
Q  24 gcaacaacttaaccctaaaaatttagctccaaaattgcagcattaaatgctaagtgagataaccct 89  Q
    |||||||||||||| || |||||| |||||||||||||||||||||||||||||||||||||||||    
T  47914650 gcaacaacttaaccttagaaatttggctccaaaattgcagcattaaatgctaagtgagataaccct 47914585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 24 - 116
Target Start/End: Complemental strand, 51854560 - 51854468
Alignment:
Q  24 gcaacaacttaaccctaaaaatttagctccaaaattgcagcattaaatgctaagtgagataaccctnnnnnnntttggccctaaagtgtttgg 116  Q
    ||||||||||||||||| |||||| ||||||| |||||| ||||||||||||| ||||||||||||       |||||| |||||||||||||    
T  51854560 gcaacaacttaaccctagaaatttggctccaagattgcaacattaaatgctaaatgagataaccctaaaattttttggctctaaagtgtttgg 51854468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 385; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 113 - 549
Target Start/End: Complemental strand, 9375395 - 9374959
Alignment:
Q  113 ttggaacaaacctcctagcatttaccaatatatgttattaataacaatgatattttccaaagcaaaaatttgacccatatatgctatttgaaattcaatt 212  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||    
T  9375395 ttggaacaaacctactagcatttaccaatatatgttattaataacaatgatattttccaaagcaaaaatttgaccatgatatgctatttgaaattcaatt 9375296  T
Q  213 tctccctcattcactccttattttgtgtatttcgaaattagcaattagcctagctattgttgtgtcccttcctattttcatgcagcatttagtgcattct 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  9375295 tctccctcattcactccttattttgtgtatttcgaaattagcaattagcctagctattgttgtgtcccttcctattttcatgcaatatttagtgcattct 9375196  T
Q  313 ttactgaataattggacggttccatgatatcagacttttagaatgcattgaaattcatcagcttttaatattacggttccaactaaaaacgaattatcta 412  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | ||||||||||||||| |     
T  9375195 ttactgaataattggacggttccatgatatcagacttttagaatgcattgaaattcctcagcttttaatattacggttctagctaaaaacgaattatatc 9375096  T
Q  413 tcttcttcctcatcactcaccactctgtagtctctctctttctactaatcttctttcatttgcttctacattaatttctcagcaacgagcaactcaccat 512  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||    
T  9375095 tcttcttcctcatcactcaccactctgtagtctctctctttctactaatcttctttcatttgcttctacaatattttctcagcaacgagcaactcaccat 9374996  T
Q  513 tttctcatcggaaacctgtccctccaccttttcatct 549  Q
    |||||||||||||||||||||||||||||||||||||    
T  9374995 tttctcatcggaaacctgtccctccaccttttcatct 9374959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 32 - 118
Target Start/End: Complemental strand, 9375504 - 9375418
Alignment:
Q  32 ttaaccctaaaaatttagctccaaaattgcagcattaaatgctaagtgagataaccctnnnnnnntttggccctaaagtgtttggaa 118  Q
    |||| |||| |||||| ||||||||| |||| ||||||||||||||||||||||||||       ||||||||||||||||||||||    
T  9375504 ttaatcctagaaatttggctccaaaactgcaacattaaatgctaagtgagataaccctaaaaaaatttggccctaaagtgtttggaa 9375418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 376; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 113 - 547
Target Start/End: Complemental strand, 29656847 - 29656417
Alignment:
Q  113 ttggaacaaacctcctagcatttaccaatatatgttattaataacaatgatattttccaaagcaaaaatttgacccatatatgctatttgaaattcaatt 212  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29656847 ttggaacaaacctactagcatttaccaatatatgttattaataacaatgatattttccaaagcaaaaatttgacccatatatgctatttgaaattcaatt 29656748  T
Q  213 tctccctcattcactccttattttgtgtatttcgaaattagcaattagcctagctattgttgtgtcccttcctattttcatgcagcatttagtgcattct 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29656747 tctccctcattcactccttattttgtgtatttcgaaattagcaattagcctagctattgttgtgtcccttcctattttcatgcagcatttagtgcattct 29656648  T
Q  313 ttactgaataattggacggttccatgatatcagacttttagaatgcattgaaattcatcagcttttaatattacggttccaactaaaaacgaattatcta 412  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |||||||||||||||||     
T  29656647 ttactgaataattggacggttccatgatatcagacttttagaaagcattgaaattcctcagcttttaatattacggttccagctaaaaacgaattatctc 29656548  T
Q  413 tcttcttcctcatcactcaccactctgtagtctctctctttctactaatcttctttcatttgcttctacattaatttctcagcaacgagc-aactcacca 511  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||     |||| |||||||||    
T  29656547 tcttcttcctcatcactcaccactatgtagtctctctctttctactaatcttctttcatttgcttctacaataatttctca-----gagcaaactcacca 29656453  T
Q  512 ttttctcatcggaaacctgtccctccaccttttcat 547  Q
    |||||||||||||||||||||| |||||||||||||    
T  29656452 ttttctcatcggaaacctgtccttccaccttttcat 29656417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 24 - 118
Target Start/End: Complemental strand, 29656964 - 29656870
Alignment:
Q  24 gcaacaacttaaccctaaaaatttagctccaaaattgcagcattaaatgctaagtgagataaccctnnnnnnntttggccctaaagtgtttggaa 118  Q
    ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||    
T  29656964 gcaacaacttaaccctataaatttggctccaaaattgcagcattaaatgctaagtgagataaccctacaaaaatttggccctaaagtgtttggaa 29656870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 76
Target Start/End: Complemental strand, 10647768 - 10647715
Alignment:
Q  23 agcaacaacttaaccctaaaaatttagctccaaaattgcagcattaaatgctaa 76  Q
    ||||||||||||||||||||  ||| |||| |||| ||||||||| ||||||||    
T  10647768 agcaacaacttaaccctaaatttttggctctaaaactgcagcatttaatgctaa 10647715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 113 - 406
Target Start/End: Original strand, 41828332 - 41828625
Alignment:
Q  113 ttggaacaaacctcctagcatttaccaatatatgttattaataacaatgatattttccaaagcaaaaatttgacccatatatgctatttgaaattcaatt 212  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  41828332 ttggaacaaacctactagcatttaccaatatatgttattaataacaatgatattttccaaagcaaaaatttgacccatatatgctatttgaatttcaatt 41828431  T
Q  213 tctccctcattcactccttattttgtgtatttcgaaattagcaattagcctagctattgttgtgtcccttcctattttcatgcagcatttagtgcattct 312  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41828432 tctccctcattcacttcttattttgtgtatttcgaaattagcaattagcctagctattgttgtgtcccttcctattttcatgcagcatttagtgcattct 41828531  T
Q  313 ttactgaataattggacggttccatgatatcagacttttagaatgcattgaaattcatcagcttttaatattacggttccaactaaaaacgaat 406  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| ||||||||||||    
T  41828532 ttgctgaataattggacggttccatgatatcagacttttagaatgcattgaaattcctcaccttttaatattacggttccagctaaaaacgaat 41828625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 429 - 549
Target Start/End: Original strand, 41828625 - 41828745
Alignment:
Q  429 tcaccactctgtagtctctctctttctactaatcttctttcatttgcttctacattaatttctcagcaacgagcaactcaccattttctcatcggaaacc 528  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  41828625 tcaccactctgtagtctctctctttctactaatcttctttcatttgcttctacaataatttctcagcaacgagcaactcaccattttctcatcggaaacc 41828724  T
Q  529 tgtccctccaccttttcatct 549  Q
    | |||||||||||||||||||    
T  41828725 tatccctccaccttttcatct 41828745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 113 - 183
Target Start/End: Complemental strand, 14175642 - 14175572
Alignment:
Q  113 ttggaacaaacctcctagcatttaccaatatatgttattaataacaatgatattttccaaagcaaaaattt 183  Q
    ||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  14175642 ttggaacaaacctactagcatttatcaatatatgttattaataacaatgatattttccaaagcaaaaattt 14175572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 24 - 116
Target Start/End: Original strand, 41828215 - 41828307
Alignment:
Q  24 gcaacaacttaaccctaaaaatttagctccaaaattgcagcattaaatgctaagtgagataaccctnnnnnnntttggccctaaagtgtttgg 116  Q
    ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||    
T  41828215 gcaacaacttaaccctagaaatttggctccaaaattgcagcattaaatgctaagtgagataaccctaaaaaaaattggccctaaagtgtttgg 41828307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 120 - 183
Target Start/End: Complemental strand, 952955 - 952892
Alignment:
Q  120 aaacctcctagcatttaccaatatatgttattaataacaatgatattttccaaagcaaaaattt 183  Q
    |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  952955 aaacctactagcacttaccaatatatgttattaataacaatgatattttccaaagcaaaaattt 952892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 24 - 115
Target Start/End: Original strand, 54418935 - 54419026
Alignment:
Q  24 gcaacaacttaaccctaaaaatttagctccaaaattgcagcattaaatgctaagtgagataaccctnnnnnnntttggccctaaagtgtttg 115  Q
    ||||||||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||       |||||| ||||||||||||    
T  54418935 gcaacaacttaaccctagaaatttggctccaaaattgcagcattaaatgctaaatgagataaccctaaatttttttggctctaaagtgtttg 54419026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 113 - 187
Target Start/End: Original strand, 54419052 - 54419126
Alignment:
Q  113 ttggaacaaacctcctagcatttaccaatatatgttattaataacaatgatattttccaaagcaaaaatttgacc 187  Q
    ||||||||||||| |||||| |||||||||||||||||||||| ||||||||| |||||||||||||| ||||||    
T  54419052 ttggaacaaacctactagcacttaccaatatatgttattaatatcaatgatatattccaaagcaaaaaattgacc 54419126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 24 - 89
Target Start/End: Complemental strand, 14175758 - 14175693
Alignment:
Q  24 gcaacaacttaaccctaaaaatttagctccaaaattgcagcattaaatgctaagtgagataaccct 89  Q
    ||||||||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||    
T  14175758 gcaacaacttaaccctagaaatttggctccaaaattgcagcattaaatgctaaatgagataaccct 14175693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 24 - 116
Target Start/End: Original strand, 41828038 - 41828131
Alignment:
Q  24 gcaacaacttaa-ccctaaaaatttagctccaaaattgcagcattaaatgctaagtgagataaccctnnnnnnntttggccctaaagtgtttgg 116  Q
    |||||||||||| |||||||||||| ||||||||||| || ||||||||||||||||||||||||||       ||||||||||||||||||||    
T  41828038 gcaacaacttaaaccctaaaaatttggctccaaaattacaacattaaatgctaagtgagataaccctaaaaaaatttggccctaaagtgtttgg 41828131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 24 - 89
Target Start/End: Complemental strand, 953076 - 953011
Alignment:
Q  24 gcaacaacttaaccctaaaaatttagctccaaaattgcagcattaaatgctaagtgagataaccct 89  Q
    ||||||||||||||||| ||||||||||| |||||| |||||||||||||||| ||||||||||||    
T  953076 gcaacaacttaaccctagaaatttagctcaaaaattacagcattaaatgctaaatgagataaccct 953011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 131 - 178
Target Start/End: Original strand, 50833909 - 50833956
Alignment:
Q  131 catttaccaatatatgttattaataacaatgatattttccaaagcaaa 178  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  50833909 catttaccaatatatgttattaataacaatgatattttccaaagcaaa 50833956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 131 - 178
Target Start/End: Complemental strand, 50841944 - 50841897
Alignment:
Q  131 catttaccaatatatgttattaataacaatgatattttccaaagcaaa 178  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  50841944 catttaccaatatatgttattaataacaatgatattttccaaagcaaa 50841897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 198 - 333
Target Start/End: Original strand, 42658484 - 42658621
Alignment:
Q  198 atttgaaattcaatttctccctcattcactccttat-tttgtgtatttcgaaattagcaattagcctagctattgttgtgtccctt-cctattttcatgc 295  Q
    ||||||||||||| || ||||||||||||||||||| |||||  ||||| |||||||||   ||||| | ||||||| |||   || |||||||||||||    
T  42658484 atttgaaattcaaattatccctcattcactccttatgtttgtcaatttcaaaattagcagaaagcctcggtattgttatgtaaattccctattttcatgc 42658583  T
Q  296 agcatttagtgcattctttactgaataattggacggtt 333  Q
    | |||||||||| |||||| |||| |||||| ||||||    
T  42658584 aacatttagtgccttctttgctgactaattgaacggtt 42658621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 76
Target Start/End: Original strand, 9640274 - 9640327
Alignment:
Q  23 agcaacaacttaaccctaaaaatttagctccaaaattgcagcattaaatgctaa 76  Q
    ||||||||||||||||||||  ||| |||| |||| ||||||||| ||||||||    
T  9640274 agcaacaacttaaccctaaatttttggctctaaaaatgcagcatttaatgctaa 9640327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 76
Target Start/End: Original strand, 48760784 - 48760837
Alignment:
Q  23 agcaacaacttaaccctaaaaatttagctccaaaattgcagcattaaatgctaa 76  Q
    ||||||||||||||||||||| ||| |||| |||| |||| |||| ||||||||    
T  48760784 agcaacaacttaaccctaaaattttggctctaaaactgcaacatttaatgctaa 48760837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 113 - 145
Target Start/End: Original strand, 41828156 - 41828188
Alignment:
Q  113 ttggaacaaacctcctagcatttaccaatatat 145  Q
    ||||||||||||| |||||||||||||||||||    
T  41828156 ttggaacaaacctactagcatttaccaatatat 41828188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 258; Significance: 1e-143; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 117 - 549
Target Start/End: Complemental strand, 9059801 - 9059384
Alignment:
Q  117 aacaaacctcctagcatttaccaatatatgttattaataacaatgatattttccaaagcaaaaatttgacccatatatgctatttgaaattcaatttctc 216  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||| ||||||||||||||    
T  9059801 aacaaacctactagcatttaccaatatatgttattaataacaatgatattttccaaagcaaaa-tttgacccagatatgctctttaaaattcaatttctc 9059703  T
Q  217 cctcattcactccttattttgtgtatttcgaaattagcaattagcctagctattgttgtgtcccttcctattttcatgcagcatttagtgcattctttac 316  Q
    ||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||    
T  9059702 cctcattcactacttattttatgtatttcgaaattagcaattagtctagctattgtcgtgtctcttcctattttcatgcaacatttagtgcattctttac 9059603  T
Q  317 tgaataattggacggttccatgatatcagacttttagaatgcattgaaattcatcagcttttaatattacggttccaactaaaaacgaattatctatctt 416  Q
    |||||||||||||||||||||||||||||| | |||||||||||| |||||| |||| ||| |||||||||| |||  ||            |||  | |    
T  9059602 tgaataattggacggttccatgatatcaga-tgttagaatgcattaaaattcctcagatttcaatattacggctcc--ct------------tcttccct 9059518  T
Q  417 cttc-ctcatcactcaccactctgtagtctctctctttctactaatcttctttcatttgcttctacattaatttctcagcaacgagcaactcaccatttt 515  Q
    | || |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  9059517 catcactcaccactcaccactctgtagtctctctctttctactgatcttctttcatttgcttctacaataatttctcagcaacgagcaactcaccatttt 9059418  T
Q  516 ctcatcggaaacctgtccctccaccttttcatct 549  Q
    ||||||| ||||||||||| ||||||||||||||    
T  9059417 ctcatcgaaaacctgtccccccaccttttcatct 9059384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 113 - 183
Target Start/End: Complemental strand, 43800347 - 43800277
Alignment:
Q  113 ttggaacaaacctcctagcatttaccaatatatgttattaataacaatgatattttccaaagcaaaaattt 183  Q
    ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  43800347 ttggaacaaacctactagcacttaccaatatatgttattaataacaatgatattttccacagcaaaaattt 43800277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 24 - 116
Target Start/End: Complemental strand, 9059922 - 9059830
Alignment:
Q  24 gcaacaacttaaccctaaaaatttagctccaaaattgcagcattaaatgctaagtgagataaccctnnnnnnntttggccctaaagtgtttgg 116  Q
    ||||||||||||||||||||||||  ||| ||||||||||||||||||||||||||||||||||||       |||||| |||||||||||||    
T  9059922 gcaacaacttaaccctaaaaatttgactctaaaattgcagcattaaatgctaagtgagataaccctacaaaaatttggctctaaagtgtttgg 9059830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 24 - 87
Target Start/End: Complemental strand, 12447220 - 12447157
Alignment:
Q  24 gcaacaacttaaccctaaaaatttagctccaaaattgcagcattaaatgctaagtgagataacc 87  Q
    ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||    
T  12447220 gcaacaacttaaccctagaaatttggctccaaaattgcagcattaaatgctaagtgagataacc 12447157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 24 - 89
Target Start/End: Complemental strand, 43800464 - 43800399
Alignment:
Q  24 gcaacaacttaaccctaaaaatttagctccaaaattgcagcattaaatgctaagtgagataaccct 89  Q
    ||||||||||||||||| ||||||  |||| ||||||||| |||||||| ||| ||||||||||||    
T  43800464 gcaacaacttaaccctagaaatttgactccgaaattgcagtattaaatgttaaatgagataaccct 43800399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 76
Target Start/End: Original strand, 41750618 - 41750667
Alignment:
Q  27 acaacttaaccctaaaaatttagctccaaaattgcagcattaaatgctaa 76  Q
    ||||||||||||||||  ||| |||| |||||||||||||| ||||||||    
T  41750618 acaacttaaccctaaatttttggctctaaaattgcagcatttaatgctaa 41750667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 248; Significance: 1e-137; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 268 - 547
Target Start/End: Original strand, 39445259 - 39445538
Alignment:
Q  268 attgttgtgtcccttcctattttcatgcagcatttagtgcattctttactgaataattggacggttccatgatatcagacttttagaatgcattgaaatt 367  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39445259 attgttgtgtcccttcctattttcatgcaacatttagtgcattctttactgaataattggacggttccatgatatcagacttttagaatgcattgaaatt 39445358  T
Q  368 catcagcttttaatattacggttccaactaaaaacgaattatctatcttcttcctcatcactcaccactctgtagtctctctctttctactaatcttctt 467  Q
    | |||||||||||||||| ||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |||||||||    
T  39445359 cctcagcttttaatattagggttccagctaaaaacgaattatctctcttcttcctcatcgctcaccactctgtagtctctctctttctaccaatcttctt 39445458  T
Q  468 tcatttgcttctacattaatttctcagcaacgagcaactcaccattttctcatcggaaacctgtccctccaccttttcat 547  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39445459 tcatttgcttctacaataatttctcagcaacgagcaactcaccattttctcatcggaaacctgtccctccaccttttcat 39445538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 113 - 241
Target Start/End: Original strand, 39445130 - 39445258
Alignment:
Q  113 ttggaacaaacctcctagcatttaccaatatatgttattaataacaatgatattttccaaagcaaaaatttgacccatatatgctatttgaaattcaatt 212  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39445130 ttggaacaaacctactagcatttaccaatatatgttattaataacaatgatattttccaaagcaaaaatttgacccatatatgctatttgaaattcaatt 39445229  T
Q  213 tctccctcattcactccttattttgtgta 241  Q
    |||||||||||||||||||||||||||||    
T  39445230 tctccctcattcactccttattttgtgta 39445258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 24 - 118
Target Start/End: Original strand, 39445013 - 39445107
Alignment:
Q  24 gcaacaacttaaccctaaaaatttagctccaaaattgcagcattaaatgctaagtgagataaccctnnnnnnntttggccctaaagtgtttggaa 118  Q
    ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||    
T  39445013 gcaacaacttaaccctagaaatttggctccaaaattgcagcattaaatgctaagtgagataaccctaaaaaaatttggccctaaagtgtttggaa 39445107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 116 - 183
Target Start/End: Original strand, 40722747 - 40722814
Alignment:
Q  116 gaacaaacctcctagcatttaccaatatatgttattaataacaatgatattttccaaagcaaaaattt 183  Q
    |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  40722747 gaacaaacctactagcatttaccaatatatattattaataacaatgatattttccaaagcaaaaattt 40722814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 24 - 89
Target Start/End: Original strand, 48829733 - 48829798
Alignment:
Q  24 gcaacaacttaaccctaaaaatttagctccaaaattgcagcattaaatgctaagtgagataaccct 89  Q
    ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||    
T  48829733 gcaacaacttaaccctagaaatttggctccaaaattgcagcattaaatgctaagtgagataaccct 48829798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 24 - 85
Target Start/End: Original strand, 40722626 - 40722687
Alignment:
Q  24 gcaacaacttaaccctaaaaatttagctccaaaattgcagcattaaatgctaagtgagataa 85  Q
    ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||    
T  40722626 gcaacaacttaaccctagaaatttggctccaaaattgcagcattaaatgctaagtgagataa 40722687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 24 - 89
Target Start/End: Complemental strand, 85336 - 85271
Alignment:
Q  24 gcaacaacttaaccctaaaaatttagctccaaaattgcagcattaaatgctaagtgagataaccct 89  Q
    ||||||||||||||||| || ||| ||||||||||||||  |||||||||||||||||||||||||    
T  85336 gcaacaacttaaccctagaattttggctccaaaattgcaatattaaatgctaagtgagataaccct 85271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 113 - 159
Target Start/End: Original strand, 48829850 - 48829896
Alignment:
Q  113 ttggaacaaacctcctagcatttaccaatatatgttattaataacaa 159  Q
    ||||||||||||| ||||||||| |||||||||||||||||||||||    
T  48829850 ttggaacaaacctactagcatttcccaatatatgttattaataacaa 48829896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 67; Significance: 2e-29; HSPs: 2)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 117 - 187
Target Start/End: Original strand, 252369 - 252439
Alignment:
Q  117 aacaaacctcctagcatttaccaatatatgttattaataacaatgatattttccaaagcaaaaatttgacc 187  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  252369 aacaaacctactagcatttaccaatatatgttattaataacaatgatattttccaaagcaaaaatttgacc 252439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 24 - 89
Target Start/End: Original strand, 252248 - 252313
Alignment:
Q  24 gcaacaacttaaccctaaaaatttagctccaaaattgcagcattaaatgctaagtgagataaccct 89  Q
    |||||||||||| | || |||||| | | |||||||||||||||||||||||||||| ||||||||    
T  252248 gcaacaacttaatcatagaaatttggtttcaaaattgcagcattaaatgctaagtgatataaccct 252313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 1e-24; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 113 - 187
Target Start/End: Original strand, 29533950 - 29534023
Alignment:
Q  113 ttggaacaaacctcctagcatttaccaatatatgttattaataacaatgatattttccaaagcaaaaatttgacc 187  Q
    ||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  29533950 ttggaacaaacctactagcacttaccaatat-tgttattaataacaatgatattttccaaagcaaaaatttgacc 29534023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 113 - 183
Target Start/End: Complemental strand, 29535560 - 29535490
Alignment:
Q  113 ttggaacaaacctcctagcatttaccaatatatgttattaataacaatgatattttccaaagcaaaaattt 183  Q
    |||||||| |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29535560 ttggaacatacctactagcacttaccaatatatgttattaataacaatgatattttccaaagcaaaaattt 29535490  T

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Target: chr6; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 113 - 183
Target Start/End: Complemental strand, 29535790 - 29535720
Alignment:
Q  113 ttggaacaaacctcctagcatttaccaatatatgttattaataacaatgatattttccaaagcaaaaattt 183  Q
    |||||||| |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29535790 ttggaacatacctactagcacttaccaatatatgttattaataacaatgatattttccaaagcaaaaattt 29535720  T

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Target: chr6; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 113 - 187
Target Start/End: Complemental strand, 29535330 - 29535260
Alignment:
Q  113 ttggaacaaacctcctagcatttaccaatatatgttattaataacaatgatattttccaaagcaaaaatttgacc 187  Q
    ||||||||||||| |||||| ||||||     |||||||||||||||||||||||||||||||||||||||||||    
T  29535330 ttggaacaaacctactagcacttacca----ttgttattaataacaatgatattttccaaagcaaaaatttgacc 29535260  T

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Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 24 - 116
Target Start/End: Complemental strand, 29535907 - 29535815
Alignment:
Q  24 gcaacaacttaaccctaaaaatttagctccaaaattgcagcattaaatgctaagtgagataaccctnnnnnnntttggccctaaagtgtttgg 116  Q
    ||||||| ||||||||| |||||| |||||||||||| |||||| |||||||| || |||||||||       |||||| |||||||||||||    
T  29535907 gcaacaatttaaccctagaaatttggctccaaaattgtagcatttaatgctaaatgtgataaccctaaaattttttggctctaaagtgtttgg 29535815  T

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Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 24 - 67
Target Start/End: Complemental strand, 29535441 - 29535398
Alignment:
Q  24 gcaacaacttaaccctaaaaatttagctccaaaattgcagcatt 67  Q
    ||||||||||||||||| |||||| |||||||||||||||||||    
T  29535441 gcaacaacttaaccctataaatttggctccaaaattgcagcatt 29535398  T

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Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 67
Target Start/End: Complemental strand, 29535671 - 29535628
Alignment:
Q  24 gcaacaacttaaccctaaaaatttagctccaaaattgcagcatt 67  Q
    ||||||||||||||||| |||||| ||| |||||||||||||||    
T  29535671 gcaacaacttaaccctataaatttggcttcaaaattgcagcatt 29535628  T

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Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 113 - 183
Target Start/End: Original strand, 6980664 - 6980734
Alignment:
Q  113 ttggaacaaacctcctagcatttaccaatatatgttattaataacaatgatattttccaaagcaaaaattt 183  Q
    ||||| ||||||| |||||| |||||||||||||||||||||| |||||||||||||||||||||||||||    
T  6980664 ttggatcaaacctactagcacttaccaatatatgttattaatatcaatgatattttccaaagcaaaaattt 6980734  T

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Target: chr4; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 24 - 89
Target Start/End: Complemental strand, 16032665 - 16032600
Alignment:
Q  24 gcaacaacttaaccctaaaaatttagctccaaaattgcagcattaaatgctaagtgagataaccct 89  Q
    ||||||||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||    
T  16032665 gcaacaacttaaccctagaaatttggctccaaaattgcagcattaaatgctaaatgagataaccct 16032600  T

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Target: chr4; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 24 - 89
Target Start/End: Complemental strand, 56478959 - 56478894
Alignment:
Q  24 gcaacaacttaaccctaaaaatttagctccaaaattgcagcattaaatgctaagtgagataaccct 89  Q
    ||||||||||||||||| |||||| ||||||||||||||||| |||||||||||||||||||||||    
T  56478959 gcaacaacttaaccctagaaatttggctccaaaattgcagcactaaatgctaagtgagataaccct 56478894  T

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Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 24 - 87
Target Start/End: Original strand, 6980548 - 6980611
Alignment:
Q  24 gcaacaacttaaccctaaaaatttagctccaaaattgcagcattaaatgctaagtgagataacc 87  Q
    ||||||| |||||| ||||||||| |||||||| ||||||||||||||| ||| ||||||||||    
T  6980548 gcaacaatttaaccttaaaaatttggctccaaagttgcagcattaaatgttaaatgagataacc 6980611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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