View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2859_low_12 (Length: 242)
Name: NF2859_low_12
Description: NF2859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2859_low_12 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 156; Significance: 5e-83; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 19 - 242
Target Start/End: Original strand, 37807759 - 37807982
Alignment:
| Q |
19 |
ttggaagtaataatactatatggcatgacataattattagtatgatattacacactannnnnnnnnnnnnnnnnnnngatagattggaaaagttaaattg |
118 |
Q |
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| T |
37807759 |
ttggaagtaataatactatatggcatgacataattattagtatgatattacacactattttatttttttcgatttttcatagattggaaaagctaaattg |
37807858 |
T |
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| Q |
119 |
gggattagtagagggaaaggccaaagtaataggaacagtaattggcattggtggggcaatgcttatgatattttacaaaggagtggaaattaatatttgg |
218 |
Q |
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| T |
37807859 |
gggattagtagagggaaaggccaaagtaataggaacagtaattggcattggtggggcaatgcttatgatattttacaaaggagtggaaattaatatttgg |
37807958 |
T |
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| Q |
219 |
tcttccaatatcaaccttatgcac |
242 |
Q |
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| T |
37807959 |
tcttccaatatcaaccttatgcac |
37807982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 97 - 241
Target Start/End: Original strand, 37781214 - 37781358
Alignment:
| Q |
97 |
atagattggaaaagttaaattggggattagtagagggaaaggccaaagtaataggaacagtaattggcattggtggggcaatgcttatgatattttacaa |
196 |
Q |
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| T |
37781214 |
atagattggaaaagctaaattggggattagcagaaggaaaagccaaggtaataggaacaataattagcatcagtggggcaatggtgatgatattttacag |
37781313 |
T |
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| Q |
197 |
aggagtggaaattaatatttggtcttccaatatcaaccttatgca |
241 |
Q |
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| T |
37781314 |
aggagtagaaattgatatttggacttccaatataaaccttatgca |
37781358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 97 - 236
Target Start/End: Original strand, 37789634 - 37789773
Alignment:
| Q |
97 |
atagattggaaaagttaaattggggattagtagagggaaaggccaaagtaataggaacagtaattggcattggtggggcaatgcttatgatattttacaa |
196 |
Q |
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| T |
37789634 |
atagattggaaaaactaaattggagtgtagtagaaggaaaggctaaagtgataggaacattaatggggattagtggggcgatggtgttgacattctacaa |
37789733 |
T |
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| Q |
197 |
aggagtggaaattaatatttggtcttccaatatcaacctt |
236 |
Q |
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| T |
37789734 |
aggagcagaaattaatatttggtcatcaaatatcaacctt |
37789773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 97 - 241
Target Start/End: Original strand, 37800480 - 37800624
Alignment:
| Q |
97 |
atagattggaaaagttaaattggggattagtagagggaaaggccaaagtaataggaacagtaattggcattggtggggcaatgcttatgatattttacaa |
196 |
Q |
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| T |
37800480 |
atagattggaaaaattgaattggagtctagcagaaggaaaggctaaagtgatgggaacagcaattggaattagtggtgcgatgctgatgacattttacaa |
37800579 |
T |
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| Q |
197 |
aggagtggaaattaatatttggtcttccaatatcaaccttatgca |
241 |
Q |
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| T |
37800580 |
tggagcagaaatcaatattcgttcatcaaatattaaccttttgca |
37800624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 214
Target Start/End: Complemental strand, 1214739 - 1214657
Alignment:
| Q |
132 |
ggaaaggccaaagtaataggaacagtaattggcattggtggggcaatgcttatgatattttacaaaggagtggaaattaatat |
214 |
Q |
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| T |
1214739 |
ggaaaggccaaagtgttaggaacattgattggaattggtggggcaatgatgttgatatttctcaaaggtttagaaattaatat |
1214657 |
T |
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